Wall clock time and date at job start Tue Mar 31 2020 14:42:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31565 * 1 3 3 Si 1.86794 * 120.00190 * 2 1 4 4 H 1.48501 * 109.47206 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.47188 * 299.99753 * 3 2 1 6 6 H 1.48498 * 109.47489 * 59.99553 * 3 2 1 7 7 C 1.38638 * 119.99896 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00083 * 179.97438 * 7 2 1 9 9 O 1.34820 * 119.99777 * 0.02562 * 7 2 1 10 10 C 1.35666 * 116.99466 * 185.06222 * 9 7 2 11 11 C 1.38697 * 120.12652 * 354.39365 * 10 9 7 12 12 C 1.38344 * 120.03007 * 179.97438 * 11 10 9 13 13 F 1.35101 * 119.86364 * 180.02562 * 12 11 10 14 14 C 1.38674 * 120.27144 * 359.97438 * 12 11 10 15 15 C 1.37973 * 120.24798 * 0.26176 * 14 12 11 16 16 C 1.39310 * 119.96584 * 359.48936 * 15 14 12 17 17 C 1.48254 * 120.13584 * 180.23518 * 16 15 14 18 18 C 1.39414 * 120.08978 * 65.27084 * 17 16 15 19 19 C 1.38382 * 119.90984 * 180.02562 * 18 17 16 20 20 O 1.36000 * 119.96262 * 180.02562 * 19 18 17 21 21 C 1.38980 * 120.06867 * 0.02562 * 19 18 17 22 22 F 1.35100 * 119.91437 * 179.97438 * 21 19 18 23 23 C 1.38549 * 120.16930 * 0.02562 * 21 19 18 24 24 F 1.35101 * 119.95488 * 179.97438 * 23 21 19 25 25 C 1.38441 * 120.09923 * 359.67254 * 23 21 19 26 26 F 1.35096 * 120.04309 * 180.30281 * 25 23 21 27 27 H 0.97006 * 120.00131 * 359.97438 * 1 2 3 28 28 H 1.07996 * 119.98760 * 0.02562 * 11 10 9 29 29 H 1.08001 * 119.87326 * 179.97438 * 14 12 11 30 30 H 1.07997 * 120.01899 * 179.71986 * 15 14 12 31 31 H 1.08009 * 120.04358 * 359.97438 * 18 17 16 32 32 H 0.96695 * 113.99872 * 89.99994 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 3.7097 1.3463 0.0006 5 1 1.8910 2.3964 -1.2126 6 1 1.8909 2.3965 1.2124 7 6 2.0088 -1.2007 0.0005 8 1 3.0887 -1.2007 0.0001 9 8 1.3347 -2.3682 0.0005 10 6 2.0695 -3.5036 0.1077 11 6 3.4549 -3.4400 0.0941 12 6 4.2023 -4.5990 0.2041 13 9 5.5516 -4.5332 0.1909 14 6 3.5721 -5.8280 0.3288 15 6 2.1945 -5.9048 0.3388 16 6 1.4320 -4.7436 0.2340 17 6 -0.0484 -4.8214 0.2496 18 6 -0.7134 -5.2572 1.3947 19 6 -2.0953 -5.3288 1.4050 20 8 -2.7452 -5.7533 2.5217 21 6 -2.8198 -4.9674 0.2754 22 9 -4.1688 -5.0390 0.2886 23 6 -2.1620 -4.5348 -0.8647 24 9 -2.8704 -4.1850 -1.9606 25 6 -0.7800 -4.4545 -0.8806 26 9 -0.1400 -4.0268 -1.9908 27 1 -0.4851 0.8401 0.0004 28 1 3.9505 -2.4853 -0.0016 29 1 4.1618 -6.7288 0.4139 30 1 1.7076 -6.8643 0.4317 31 1 -0.1507 -5.5394 2.2724 32 1 -2.9741 -5.0436 3.1373 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245636563.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:42:44 Heat of formation + Delta-G solvation = -211.952443 kcal Electronic energy + Delta-G solvation = -27609.020628 eV Core-core repulsion = 22807.293402 eV Total energy + Delta-G solvation = -4801.727226 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.051 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -50.86401 -50.21315 -49.88837 -49.54151 -41.18248 -40.26448 -38.29073 -37.43093 -34.37357 -33.17189 -31.05281 -30.77219 -29.41343 -27.44158 -24.91659 -24.31296 -23.53674 -22.61496 -20.16331 -19.99504 -19.38298 -19.33503 -18.94149 -18.20025 -17.76346 -17.23844 -17.12562 -16.95907 -16.67674 -16.60776 -16.32550 -16.04947 -15.98257 -15.69720 -15.54800 -15.39399 -15.32284 -15.11697 -14.76161 -14.13426 -13.83019 -13.66091 -13.42885 -12.97312 -12.78234 -12.65972 -12.40390 -12.26442 -12.13323 -12.01423 -11.54710 -10.87075 -10.15938 -9.85721 -9.61239 -9.09071 -8.53981 -6.21760 -0.55099 -0.40689 0.20874 0.51672 1.33844 1.40048 1.50352 1.84122 2.11207 2.22512 2.55618 2.83750 2.97874 3.06121 3.19401 3.23711 3.29878 3.45274 3.54208 3.96493 4.02546 4.20312 4.37498 4.46821 4.58101 4.71658 4.84181 4.86897 5.01445 5.12523 5.24037 5.29354 5.43474 5.47626 5.90617 5.99115 6.57838 6.90235 7.61423 8.66389 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.009639 B = 0.005695 C = 0.004153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2904.268372 B = 4915.257339 C = 6740.383397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C -0.009 4.009 3 Si 1.010 2.990 4 H -0.254 1.254 5 H -0.272 1.272 6 H -0.265 1.265 7 C -0.417 4.417 8 H 0.101 0.899 9 O -0.196 6.196 10 C 0.167 3.833 11 C -0.287 4.287 12 C 0.147 3.853 13 F -0.144 7.144 14 C -0.220 4.220 15 C -0.006 4.006 16 C -0.161 4.161 17 C -0.013 4.013 18 C -0.071 4.071 19 C 0.116 3.884 20 O -0.477 6.477 21 C 0.057 3.943 22 F -0.120 7.120 23 C 0.031 3.969 24 F -0.129 7.129 25 C 0.089 3.911 26 F -0.130 7.130 27 H 0.274 0.726 28 H 0.128 0.872 29 H 0.167 0.833 30 H 0.177 0.823 31 H 0.190 0.810 32 H 0.420 0.580 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.158 -11.391 5.174 12.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.209 4.209 3 Si 0.830 3.170 4 H -0.177 1.177 5 H -0.197 1.197 6 H -0.190 1.190 7 C -0.493 4.493 8 H 0.118 0.882 9 O -0.099 6.099 10 C 0.114 3.886 11 C -0.307 4.307 12 C 0.128 3.872 13 F -0.123 7.123 14 C -0.239 4.239 15 C -0.024 4.024 16 C -0.162 4.162 17 C -0.015 4.015 18 C -0.089 4.089 19 C 0.069 3.931 20 O -0.291 6.291 21 C 0.036 3.964 22 F -0.098 7.098 23 C 0.010 3.990 24 F -0.108 7.108 25 C 0.068 3.932 26 F -0.109 7.109 27 H 0.083 0.917 28 H 0.146 0.854 29 H 0.184 0.816 30 H 0.194 0.806 31 H 0.207 0.793 32 H 0.281 0.719 Dipole moment (debyes) X Y Z Total from point charges -0.543 -11.696 4.827 12.664 hybrid contribution 0.121 2.036 -0.752 2.174 sum -0.422 -9.660 4.074 10.493 Atomic orbital electron populations 1.70164 1.07738 1.28878 1.47183 1.26421 0.96724 1.02327 0.95444 0.84637 0.78365 0.75362 0.78621 1.17698 1.19678 1.19030 1.21819 0.92494 0.81264 1.53686 0.88165 1.83963 1.35047 1.12114 1.78822 1.19443 0.89824 0.87813 0.91565 1.21016 0.93862 0.99234 1.16567 1.17699 0.76095 0.94547 0.98864 1.91447 1.29771 1.97380 1.93707 1.20994 0.95212 0.96166 1.11534 1.21047 0.92145 0.96830 0.92377 1.17817 0.90384 0.91480 1.16524 1.18410 0.93041 0.98647 0.91375 1.21587 0.92102 0.97155 0.98075 1.17781 0.89807 0.98679 0.86825 1.84816 1.76829 1.37744 1.29666 1.17817 0.77897 1.06177 0.94538 1.91509 1.27415 1.94147 1.96756 1.17436 0.88273 1.07951 0.85312 1.91496 1.77894 1.90155 1.51228 1.17772 0.87998 1.01904 0.85507 1.91507 1.81632 1.87360 1.50368 0.91700 0.85407 0.81552 0.80600 0.79284 0.71877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -52.34 13.67 21.61 0.30 -52.04 16 2 C -0.01 -0.49 5.49 84.83 0.47 -0.03 16 3 Si 1.01 41.23 29.55 68.60 2.03 43.26 16 4 H -0.25 -9.69 7.11 99.48 0.71 -8.98 16 5 H -0.27 -10.84 7.11 99.48 0.71 -10.14 16 6 H -0.27 -10.33 7.11 99.48 0.71 -9.62 16 7 C -0.42 -22.74 9.49 67.92 0.64 -22.09 16 8 H 0.10 5.11 5.21 -2.91 -0.02 5.09 16 9 O -0.20 -10.61 8.92 -21.71 -0.19 -10.80 16 10 C 0.17 7.45 6.43 22.81 0.15 7.59 16 11 C -0.29 -11.83 9.14 22.40 0.20 -11.63 16 12 C 0.15 5.01 7.30 22.40 0.16 5.17 16 13 F -0.14 -4.74 17.26 44.97 0.78 -3.97 16 14 C -0.22 -5.89 10.01 22.31 0.22 -5.66 16 15 C -0.01 -0.17 9.73 22.46 0.22 0.05 16 16 C -0.16 -5.74 5.02 -19.93 -0.10 -5.84 16 17 C -0.01 -0.46 4.95 -20.02 -0.10 -0.56 16 18 C -0.07 -1.85 9.67 22.59 0.22 -1.63 16 19 C 0.12 2.98 6.70 22.48 0.15 3.13 16 20 O -0.48 -9.34 13.36 -93.56 -1.25 -10.59 16 21 C 0.06 1.78 7.31 22.52 0.16 1.95 16 22 F -0.12 -3.73 17.01 44.97 0.76 -2.96 16 23 C 0.03 1.17 7.30 22.39 0.16 1.33 16 24 F -0.13 -5.08 17.08 44.97 0.77 -4.32 16 25 C 0.09 3.51 6.95 22.63 0.16 3.67 16 26 F -0.13 -5.96 16.53 44.97 0.74 -5.21 16 27 H 0.27 14.64 8.31 -92.70 -0.77 13.87 16 28 H 0.13 5.55 5.64 -2.91 -0.02 5.53 16 29 H 0.17 3.19 8.06 -2.91 -0.02 3.17 16 30 H 0.18 3.08 8.06 -2.91 -0.02 3.05 16 31 H 0.19 3.60 8.06 -2.91 -0.02 3.58 16 32 H 0.42 4.42 9.06 -74.06 -0.67 3.75 16 Total: -1.00 -69.11 312.57 7.23 -61.88 By element: Atomic # 1 Polarization: 8.72 SS G_CDS: 0.58 Total: 9.30 kcal Atomic # 6 Polarization: -27.26 SS G_CDS: 2.72 Total: -24.54 kcal Atomic # 7 Polarization: -52.34 SS G_CDS: 0.30 Total: -52.04 kcal Atomic # 8 Polarization: -19.95 SS G_CDS: -1.44 Total: -21.39 kcal Atomic # 9 Polarization: -19.51 SS G_CDS: 3.05 Total: -16.46 kcal Atomic # 14 Polarization: 41.23 SS G_CDS: 2.03 Total: 43.26 kcal Total: -69.11 7.23 -61.88 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245636563.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -150.077 kcal (2) G-P(sol) polarization free energy of solvation -69.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -219.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -211.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds