Wall clock time and date at job start Tue Mar 31 2020 15:13:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.34812 * 126.42997 * 2 1 4 4 C 1.33996 * 107.75403 * 180.02562 * 3 2 1 5 5 Br 1.89102 * 125.63104 * 180.02562 * 4 3 2 6 6 N 1.30360 * 108.73870 * 359.75266 * 4 3 2 7 7 C 1.34284 * 126.43518 * 180.02562 * 2 1 3 8 8 C 1.50703 * 126.15676 * 359.95193 * 7 2 1 9 9 N 1.46899 * 109.47107 * 89.99974 * 8 7 2 10 10 C 1.46847 * 111.00044 * 66.04660 * 9 8 7 11 11 C 1.53038 * 109.52866 * 185.83761 * 10 9 8 12 12 C 1.53117 * 109.27421 * 300.82510 * 11 10 9 13 13 C 1.53115 * 109.16360 * 57.65205 * 12 11 10 14 14 H 1.09000 * 109.50430 * 62.28388 * 13 12 11 15 15 C 1.50705 * 109.50467 * 182.36224 * 13 12 11 16 16 H 1.07994 * 119.99969 * 119.99439 * 15 13 12 17 17 C 1.37881 * 120.00122 * 300.00170 * 15 13 12 18 18 N 1.31509 * 119.99577 * 359.97438 * 17 15 13 19 19 Si 1.86793 * 120.00084 * 179.97438 * 17 15 13 20 20 H 1.48494 * 109.47382 * 90.00072 * 19 17 15 21 21 H 1.48505 * 109.46796 * 209.99984 * 19 17 15 22 22 H 1.48507 * 109.47259 * 329.99465 * 19 17 15 23 23 C 1.46844 * 110.99944 * 190.25611 * 9 8 7 24 24 H 1.09008 * 109.46746 * 269.96545 * 1 2 3 25 25 H 1.09003 * 109.47656 * 29.96293 * 1 2 3 26 26 H 1.08999 * 109.47150 * 149.97022 * 1 2 3 27 27 H 1.09002 * 109.47152 * 330.00061 * 8 7 2 28 28 H 1.09001 * 109.46980 * 210.00162 * 8 7 2 29 29 H 1.09001 * 109.46436 * 305.85995 * 10 9 8 30 30 H 1.09007 * 109.46424 * 65.82219 * 10 9 8 31 31 H 1.09005 * 109.49841 * 60.75956 * 11 10 9 32 32 H 1.08994 * 109.50372 * 180.87942 * 11 10 9 33 33 H 1.09003 * 109.52002 * 177.55557 * 12 11 10 34 34 H 1.08995 * 109.52510 * 297.67406 * 12 11 10 35 35 H 0.97005 * 120.00095 * 180.02562 * 18 17 15 36 36 H 1.09004 * 109.46477 * 294.17796 * 23 9 8 37 37 H 1.08993 * 109.46460 * 54.14969 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3075 1.0847 0.0000 4 6 3.5769 0.6556 -0.0006 5 35 5.1127 1.7589 -0.0001 6 7 3.5784 -0.6480 0.0044 7 6 2.3045 -1.0804 -0.0005 8 6 1.8536 -2.5184 -0.0001 9 7 1.7062 -2.9857 -1.3850 10 6 3.0057 -3.0272 -2.0675 11 6 2.7977 -3.3766 -3.5429 12 6 2.1017 -4.7364 -3.6470 13 6 0.7735 -4.6808 -2.8873 14 1 0.1218 -3.9382 -3.3477 15 6 0.1091 -6.0326 -2.9358 16 1 -0.1048 -6.5623 -2.0193 17 6 -0.2256 -6.5931 -4.1502 18 7 0.0345 -5.9479 -5.2662 19 14 -1.0485 -8.2689 -4.2103 20 1 -2.5229 -8.0984 -4.1637 21 1 -0.6698 -8.9615 -5.4682 22 1 -0.6069 -9.0793 -3.0468 23 6 1.0403 -4.2936 -1.4309 24 1 -0.3633 -0.0006 1.0278 25 1 -0.3634 0.8903 -0.5133 26 1 -0.3633 -0.8897 -0.5143 27 1 0.8960 -2.5988 0.5144 28 1 2.5945 -3.1313 0.5133 29 1 3.4883 -2.0529 -1.9895 30 1 3.6372 -3.7833 -1.6008 31 1 2.1777 -2.6135 -4.0136 32 1 3.7637 -3.4226 -4.0457 33 1 1.9125 -4.9695 -4.6949 34 1 2.7393 -5.5062 -3.2122 35 1 -0.2012 -6.3420 -6.1206 36 1 1.6808 -5.0438 -0.9672 37 1 0.0952 -4.2392 -0.8907 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001249389632.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:13:29 Heat of formation + Delta-G solvation = 25.777024 kcal Electronic energy + Delta-G solvation = -20363.487501 eV Core-core repulsion = 17188.651353 eV Total energy + Delta-G solvation = -3174.836147 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 328.053 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -43.48681 -38.25424 -35.33441 -33.86028 -32.96979 -31.77314 -31.29779 -29.84598 -27.59029 -25.36267 -24.90823 -22.48279 -21.95342 -21.57453 -20.41411 -18.57524 -17.11357 -17.07004 -16.31067 -15.18127 -14.96001 -14.63909 -14.28907 -14.10638 -13.39188 -13.29750 -13.14002 -12.77034 -12.50455 -12.37606 -11.96384 -11.84979 -11.78295 -11.38361 -11.12625 -11.01440 -10.94465 -10.70544 -10.64452 -10.62577 -10.04502 -9.81414 -9.45906 -9.10108 -8.69459 -8.65259 -8.29587 -7.70632 -5.96631 -4.03034 0.28885 1.15749 2.41832 2.87024 3.31205 3.38205 3.40954 4.37485 4.49422 4.68818 4.74467 4.95107 5.20943 5.33504 5.34171 5.57597 5.69184 5.81157 5.83832 5.88298 5.95852 6.09458 6.15511 6.33063 6.40461 6.53960 6.76919 6.78318 6.96032 7.23727 7.38605 7.42741 7.66273 7.74473 7.79684 8.08565 8.18803 8.48455 9.01027 9.61279 11.09218 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.030167 B = 0.002873 C = 0.002733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.932086 B = 9744.926744 C =10243.399299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.005 4.005 3 O -0.188 6.188 4 C 0.155 3.845 5 Br 0.112 6.888 6 N -0.425 5.425 7 C 0.004 3.996 8 C 0.133 3.867 9 N -0.534 5.534 10 C 0.065 3.935 11 C -0.116 4.116 12 C -0.110 4.110 13 C 0.056 3.944 14 H 0.034 0.966 15 C -0.515 4.515 16 H 0.054 0.946 17 C 0.063 3.937 18 N -0.888 5.888 19 Si 0.890 3.110 20 H -0.281 1.281 21 H -0.287 1.287 22 H -0.275 1.275 23 C 0.068 3.932 24 H 0.085 0.915 25 H 0.080 0.920 26 H 0.108 0.892 27 H 0.090 0.910 28 H 0.048 0.952 29 H 0.061 0.939 30 H 0.024 0.976 31 H 0.058 0.942 32 H 0.045 0.955 33 H 0.090 0.910 34 H 0.030 0.970 35 H 0.259 0.741 36 H 0.021 0.979 37 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.060 16.899 11.829 21.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.060 4.060 3 O -0.075 6.075 4 C -0.128 4.128 5 Br 0.193 6.807 6 N -0.158 5.158 7 C -0.118 4.118 8 C 0.004 3.996 9 N -0.259 5.259 10 C -0.063 4.063 11 C -0.154 4.154 12 C -0.149 4.149 13 C 0.038 3.962 14 H 0.052 0.948 15 C -0.554 4.554 16 H 0.072 0.928 17 C -0.138 4.138 18 N -0.526 5.526 19 Si 0.718 3.282 20 H -0.207 1.207 21 H -0.213 1.213 22 H -0.200 1.200 23 C -0.059 4.059 24 H 0.104 0.896 25 H 0.099 0.901 26 H 0.126 0.874 27 H 0.109 0.891 28 H 0.066 0.934 29 H 0.079 0.921 30 H 0.043 0.957 31 H 0.076 0.924 32 H 0.064 0.936 33 H 0.109 0.891 34 H 0.049 0.951 35 H 0.069 0.931 36 H 0.040 0.960 37 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 7.832 17.290 11.392 22.137 hybrid contribution -0.595 -1.188 0.300 1.362 sum 7.237 16.102 11.692 21.174 Atomic orbital electron populations 1.20434 0.82935 1.05570 1.03807 1.23485 0.95092 0.83448 1.04006 1.84463 1.16346 1.36623 1.70033 1.27198 0.84648 0.90862 1.10071 1.96915 1.23323 1.62681 1.97822 1.70500 1.23638 1.07260 1.14363 1.21541 0.86886 0.97666 1.05685 1.20343 1.00246 0.86798 0.92183 1.62043 1.22086 1.29932 1.11863 1.22032 0.89182 0.99467 0.95600 1.21673 0.99418 1.00456 0.93879 1.21653 0.96589 0.92154 1.04459 1.18653 0.93422 0.96066 0.88107 0.94777 1.21139 1.38823 1.03051 0.92361 0.92813 1.24932 0.95729 0.97413 0.95755 1.69894 1.47381 1.37979 0.97385 0.86630 0.79734 0.84420 0.77392 1.20731 1.21308 1.20013 1.22342 0.96295 0.85631 1.01600 0.89645 0.90114 0.87367 0.89149 0.93380 0.92051 0.95735 0.92361 0.93598 0.89139 0.95135 0.93069 0.96026 0.92095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.69 10.04 36.00 0.36 -0.33 16 2 C -0.01 -0.07 7.38 -35.70 -0.26 -0.33 16 3 O -0.19 -2.62 10.78 5.12 0.06 -2.56 16 4 C 0.16 2.18 8.89 52.14 0.46 2.65 16 5 Br 0.11 1.17 34.13 -68.01 -2.32 -1.15 16 6 N -0.43 -6.75 10.45 -9.57 -0.10 -6.85 16 7 C 0.00 0.07 5.71 -82.80 -0.47 -0.41 16 8 C 0.13 2.04 5.13 -4.98 -0.03 2.01 16 9 N -0.53 -9.83 4.65 -236.11 -1.10 -10.93 16 10 C 0.07 1.24 5.31 -3.83 -0.02 1.22 16 11 C -0.12 -2.38 6.09 -26.65 -0.16 -2.54 16 12 C -0.11 -2.64 5.02 -26.61 -0.13 -2.77 16 13 C 0.06 1.39 2.26 -91.69 -0.21 1.18 16 14 H 0.03 0.93 8.14 -51.93 -0.42 0.51 16 15 C -0.51 -13.88 8.57 -34.44 -0.29 -14.18 16 16 H 0.05 1.42 7.74 -52.49 -0.41 1.02 16 17 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 18 N -0.89 -25.16 11.35 55.43 0.63 -24.53 16 19 Si 0.89 21.04 29.54 -169.99 -5.02 16.02 16 20 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 21 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 22 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 23 C 0.07 1.39 4.68 -3.83 -0.02 1.38 16 24 H 0.09 0.64 8.14 -51.92 -0.42 0.22 16 25 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.11 1.14 7.79 -51.93 -0.40 0.73 16 27 H 0.09 1.18 7.63 -51.93 -0.40 0.79 16 28 H 0.05 0.75 8.12 -51.93 -0.42 0.33 16 29 H 0.06 1.15 6.46 -51.93 -0.34 0.82 16 30 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 32 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.09 2.41 6.15 -51.93 -0.32 2.09 16 34 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 36 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.06 1.18 8.01 -51.93 -0.42 0.77 16 LS Contribution 321.97 15.07 4.85 4.85 Total: -1.00 -29.29 321.97 -9.09 -38.37 By element: Atomic # 1 Polarization: 2.50 SS G_CDS: -5.22 Total: -2.72 kcal Atomic # 6 Polarization: -9.63 SS G_CDS: -0.87 Total: -10.50 kcal Atomic # 7 Polarization: -41.74 SS G_CDS: -0.57 Total: -42.31 kcal Atomic # 8 Polarization: -2.62 SS G_CDS: 0.06 Total: -2.56 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Atomic # 35 Polarization: 1.17 SS G_CDS: -2.32 Total: -1.15 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -29.29 -9.09 -38.37 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001249389632.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.151 kcal (2) G-P(sol) polarization free energy of solvation -29.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.374 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds