Wall clock time and date at job start Tue Mar 31 2020 15:13:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.34806 * 126.43044 * 2 1 4 4 C 1.34002 * 107.75343 * 179.97438 * 3 2 1 5 5 Br 1.89100 * 125.63003 * 179.97438 * 4 3 2 6 6 N 1.30359 * 108.73408 * 0.22540 * 4 3 2 7 7 C 1.34283 * 126.43054 * 179.97438 * 2 1 3 8 8 C 1.50703 * 126.16139 * 0.03915 * 7 2 1 9 9 N 1.46898 * 109.47256 * 89.99253 * 8 7 2 10 10 C 1.46853 * 110.99575 * 45.79484 * 9 8 7 11 11 C 1.53043 * 109.52065 * 185.84004 * 10 9 8 12 12 C 1.53122 * 109.27833 * 300.81536 * 11 10 9 13 13 C 1.50695 * 109.57515 * 177.59185 * 12 11 10 14 14 H 1.08006 * 120.00054 * 240.29074 * 13 12 11 15 15 C 1.37873 * 119.99914 * 60.28784 * 13 12 11 16 16 N 1.31516 * 120.00068 * 359.97438 * 15 13 12 17 17 Si 1.86807 * 120.00146 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.47155 * 90.00081 * 17 15 13 19 19 H 1.48494 * 109.46991 * 210.00280 * 17 15 13 20 20 H 1.48502 * 109.46839 * 330.00264 * 17 15 13 21 21 C 1.53123 * 109.15500 * 57.65765 * 12 11 10 22 22 C 1.46844 * 111.00317 * 170.00050 * 9 8 7 23 23 H 1.09000 * 109.47067 * 359.97438 * 1 2 3 24 24 H 1.08996 * 109.47214 * 119.97747 * 1 2 3 25 25 H 1.09003 * 109.47186 * 239.98184 * 1 2 3 26 26 H 1.08998 * 109.47263 * 209.99784 * 8 7 2 27 27 H 1.09006 * 109.46736 * 330.00078 * 8 7 2 28 28 H 1.09001 * 109.46353 * 305.85254 * 10 9 8 29 29 H 1.08995 * 109.46643 * 65.82376 * 10 9 8 30 30 H 1.09004 * 109.49806 * 180.88271 * 11 10 9 31 31 H 1.09001 * 109.50731 * 60.76120 * 11 10 9 32 32 H 1.08999 * 109.52502 * 297.75681 * 12 11 10 33 33 H 0.96999 * 119.99708 * 179.97438 * 16 15 13 34 34 H 1.09009 * 109.50126 * 182.40341 * 21 12 11 35 35 H 1.09001 * 109.53885 * 62.30863 * 21 12 11 36 36 H 1.09001 * 109.46208 * 294.18155 * 22 9 8 37 37 H 1.09003 * 109.46095 * 54.15856 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3076 1.0846 0.0000 4 6 3.5770 0.6555 0.0006 5 35 5.1128 1.7588 0.0001 6 7 3.5783 -0.6481 -0.0039 7 6 2.3045 -1.0804 0.0005 8 6 1.8536 -2.5184 0.0003 9 7 1.7077 -2.9857 -1.3847 10 6 2.8630 -2.5871 -2.1990 11 6 2.6114 -2.9614 -3.6614 12 6 2.3873 -4.4726 -3.7651 13 6 2.0804 -4.8406 -5.1939 14 1 1.1395 -5.3101 -5.4405 15 6 3.0008 -4.5781 -6.1863 16 7 4.1463 -4.0059 -5.8861 17 14 2.6208 -5.0349 -7.9573 18 1 1.9436 -3.8961 -8.6279 19 1 3.8853 -5.3481 -8.6700 20 1 1.7312 -6.2238 -7.9818 21 6 1.2094 -4.8684 -2.8704 22 6 1.5015 -4.4388 -1.4310 23 1 -0.3633 1.0277 0.0005 24 1 -0.3633 -0.5135 -0.8901 25 1 -0.3634 -0.5141 0.8898 26 1 2.5938 -3.1314 0.5145 27 1 0.8953 -2.5988 0.5136 28 1 3.0088 -1.5098 -2.1198 29 1 3.7546 -3.1015 -1.8407 30 1 3.4757 -2.6796 -4.2630 31 1 1.7278 -2.4367 -4.0246 32 1 3.2852 -4.9973 -3.4386 33 1 4.7939 -3.8215 -6.5843 34 1 1.0718 -5.9492 -2.9069 35 1 0.3032 -4.3743 -3.2209 36 1 2.3996 -4.9445 -1.0762 37 1 0.6584 -4.7065 -0.7940 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001249390028.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:13:11 Heat of formation + Delta-G solvation = 28.745843 kcal Electronic energy + Delta-G solvation = -20484.811389 eV Core-core repulsion = 17310.103979 eV Total energy + Delta-G solvation = -3174.707410 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 328.053 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -43.50113 -38.29780 -35.34539 -33.92880 -32.98214 -31.62844 -31.09935 -29.74097 -27.81356 -25.91246 -24.38287 -22.21652 -22.16213 -21.64683 -20.40258 -18.51481 -17.13224 -17.02622 -16.30450 -15.18917 -15.06730 -14.55556 -14.39439 -14.15389 -13.44735 -13.27459 -12.92482 -12.87183 -12.51123 -12.41250 -11.90827 -11.84640 -11.76160 -11.47084 -11.08031 -10.92697 -10.78368 -10.73801 -10.63798 -10.40801 -10.16511 -9.94311 -9.39683 -8.93440 -8.70188 -8.64487 -8.25016 -7.75228 -5.92431 -3.98204 0.34116 1.17103 2.42438 2.87834 3.34042 3.40712 3.43659 4.40094 4.48630 4.65509 4.66746 4.90763 5.16416 5.33326 5.37466 5.51820 5.66744 5.74707 5.79100 5.86784 5.94427 6.06305 6.15196 6.32271 6.38378 6.66287 6.69377 6.89455 7.10116 7.17390 7.43057 7.47028 7.63038 7.69003 7.86212 8.09207 8.21244 8.52615 9.05670 9.66061 11.13629 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.015649 B = 0.003628 C = 0.003149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1788.814126 B = 7715.902998 C = 8890.980123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C -0.008 4.008 3 O -0.187 6.187 4 C 0.159 3.841 5 Br 0.115 6.885 6 N -0.422 5.422 7 C 0.000 4.000 8 C 0.133 3.867 9 N -0.530 5.530 10 C 0.063 3.937 11 C -0.103 4.103 12 C 0.047 3.953 13 C -0.511 4.511 14 H 0.054 0.946 15 C 0.061 3.939 16 N -0.891 5.891 17 Si 0.889 3.111 18 H -0.282 1.282 19 H -0.288 1.288 20 H -0.275 1.275 21 C -0.105 4.105 22 C 0.061 3.939 23 H 0.077 0.923 24 H 0.103 0.897 25 H 0.091 0.909 26 H 0.048 0.952 27 H 0.088 0.912 28 H 0.052 0.948 29 H 0.025 0.975 30 H 0.091 0.909 31 H 0.040 0.960 32 H 0.021 0.979 33 H 0.259 0.741 34 H 0.051 0.949 35 H 0.057 0.943 36 H 0.027 0.973 37 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.767 12.275 16.106 20.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.063 4.063 3 O -0.074 6.074 4 C -0.124 4.124 5 Br 0.195 6.805 6 N -0.154 5.154 7 C -0.122 4.122 8 C 0.005 3.995 9 N -0.256 5.256 10 C -0.065 4.065 11 C -0.141 4.141 12 C 0.029 3.971 13 C -0.549 4.549 14 H 0.072 0.928 15 C -0.140 4.140 16 N -0.530 5.530 17 Si 0.717 3.283 18 H -0.208 1.208 19 H -0.213 1.213 20 H -0.200 1.200 21 C -0.143 4.143 22 C -0.067 4.067 23 H 0.096 0.904 24 H 0.121 0.879 25 H 0.109 0.891 26 H 0.066 0.934 27 H 0.106 0.894 28 H 0.071 0.929 29 H 0.044 0.956 30 H 0.109 0.891 31 H 0.059 0.941 32 H 0.039 0.961 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.075 0.925 36 H 0.045 0.955 37 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -1.923 12.631 15.814 20.330 hybrid contribution -0.077 -0.245 -0.686 0.732 sum -1.999 12.386 15.128 19.654 Atomic orbital electron populations 1.20383 0.83002 1.04171 1.04862 1.23447 0.95089 0.83526 1.04266 1.84472 1.16382 1.36507 1.70055 1.27244 0.84643 0.90868 1.09679 1.96929 1.23232 1.62518 1.97782 1.70553 1.23446 1.07311 1.14124 1.21426 0.87123 0.97557 1.06108 1.20411 0.99861 0.86809 0.92405 1.62247 1.42150 1.14031 1.07184 1.22256 0.89617 0.98538 0.96048 1.21665 1.02253 0.99113 0.91073 1.18689 0.92520 0.92216 0.93692 1.21200 1.02382 1.39117 0.92180 0.92765 1.24974 0.95056 0.95215 0.98767 1.69888 1.07519 1.42869 1.32735 0.86649 0.77610 0.78778 0.85269 1.20774 1.21344 1.19984 1.21668 1.01118 0.98956 0.92530 1.22138 0.98932 0.86202 0.99419 0.90441 0.87893 0.89092 0.93363 0.89410 0.92933 0.95622 0.89067 0.94117 0.96126 0.93117 0.93066 0.92470 0.95520 0.92245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.62 9.95 36.01 0.36 -0.26 16 2 C -0.01 -0.11 7.38 -35.70 -0.26 -0.37 16 3 O -0.19 -2.69 10.78 5.12 0.06 -2.64 16 4 C 0.16 2.38 8.90 52.14 0.46 2.85 16 5 Br 0.12 1.33 34.13 -68.01 -2.32 -0.99 16 6 N -0.42 -7.12 10.39 -9.57 -0.10 -7.22 16 7 C 0.00 -0.01 4.86 -82.81 -0.40 -0.41 16 8 C 0.13 1.98 5.61 -4.98 -0.03 1.95 16 9 N -0.53 -9.49 4.80 -236.11 -1.13 -10.62 16 10 C 0.06 1.32 4.95 -3.83 -0.02 1.31 16 11 C -0.10 -2.52 5.12 -26.65 -0.14 -2.66 16 12 C 0.05 1.20 2.16 -91.65 -0.20 1.00 16 13 C -0.51 -14.19 8.56 -34.44 -0.29 -14.48 16 14 H 0.05 1.48 7.75 -52.48 -0.41 1.08 16 15 C 0.06 1.71 5.31 -17.82 -0.09 1.61 16 16 N -0.89 -25.96 11.37 55.43 0.63 -25.33 16 17 Si 0.89 21.55 29.54 -169.99 -5.02 16.53 16 18 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 19 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 20 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 21 C -0.10 -2.19 5.32 -26.65 -0.14 -2.33 16 22 C 0.06 1.07 5.42 -3.84 -0.02 1.05 16 23 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 24 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 25 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 26 H 0.05 0.73 8.08 -51.93 -0.42 0.32 16 27 H 0.09 1.03 7.89 -51.93 -0.41 0.62 16 28 H 0.05 1.12 5.96 -51.93 -0.31 0.81 16 29 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.09 2.52 6.17 -51.93 -0.32 2.20 16 31 H 0.04 1.02 8.14 -51.93 -0.42 0.59 16 32 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 34 H 0.05 1.03 8.14 -51.92 -0.42 0.60 16 35 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 36 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 37 H 0.06 0.88 8.12 -51.93 -0.42 0.46 16 LS Contribution 321.44 15.07 4.84 4.84 Total: -1.00 -30.54 321.44 -9.05 -39.59 By element: Atomic # 1 Polarization: 1.82 SS G_CDS: -5.23 Total: -3.41 kcal Atomic # 6 Polarization: -9.98 SS G_CDS: -0.78 Total: -10.76 kcal Atomic # 7 Polarization: -42.57 SS G_CDS: -0.60 Total: -43.17 kcal Atomic # 8 Polarization: -2.69 SS G_CDS: 0.06 Total: -2.64 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Atomic # 35 Polarization: 1.33 SS G_CDS: -2.32 Total: -0.99 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -30.54 -9.05 -39.59 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001249390028.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.333 kcal (2) G-P(sol) polarization free energy of solvation -30.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.587 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds