Wall clock time and date at job start Tue Mar 31 2020 15:13:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.34806 * 126.43044 * 2 1 4 4 C 1.34002 * 107.75343 * 179.97438 * 3 2 1 5 5 Br 1.89100 * 125.63003 * 179.97438 * 4 3 2 6 6 N 1.30359 * 108.73408 * 0.22540 * 4 3 2 7 7 C 1.34283 * 126.43054 * 179.97438 * 2 1 3 8 8 C 1.50703 * 126.16139 * 0.03915 * 7 2 1 9 9 N 1.46898 * 109.47256 * 89.99253 * 8 7 2 10 10 C 1.46853 * 110.99575 * 45.79484 * 9 8 7 11 11 C 1.53043 * 109.52065 * 185.84004 * 10 9 8 12 12 C 1.53122 * 109.27833 * 300.81536 * 11 10 9 13 13 C 1.50695 * 109.57515 * 177.59185 * 12 11 10 14 14 H 1.08006 * 120.00054 * 240.29074 * 13 12 11 15 15 C 1.37873 * 119.99914 * 60.28784 * 13 12 11 16 16 N 1.31516 * 120.00068 * 359.97438 * 15 13 12 17 17 Si 1.86807 * 120.00146 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.47155 * 90.00081 * 17 15 13 19 19 H 1.48494 * 109.46991 * 210.00280 * 17 15 13 20 20 H 1.48502 * 109.46839 * 330.00264 * 17 15 13 21 21 C 1.53123 * 109.15500 * 57.65765 * 12 11 10 22 22 C 1.46844 * 111.00317 * 170.00050 * 9 8 7 23 23 H 1.09000 * 109.47067 * 359.97438 * 1 2 3 24 24 H 1.08996 * 109.47214 * 119.97747 * 1 2 3 25 25 H 1.09003 * 109.47186 * 239.98184 * 1 2 3 26 26 H 1.08998 * 109.47263 * 209.99784 * 8 7 2 27 27 H 1.09006 * 109.46736 * 330.00078 * 8 7 2 28 28 H 1.09001 * 109.46353 * 305.85254 * 10 9 8 29 29 H 1.08995 * 109.46643 * 65.82376 * 10 9 8 30 30 H 1.09004 * 109.49806 * 180.88271 * 11 10 9 31 31 H 1.09001 * 109.50731 * 60.76120 * 11 10 9 32 32 H 1.08999 * 109.52502 * 297.75681 * 12 11 10 33 33 H 0.96999 * 119.99708 * 179.97438 * 16 15 13 34 34 H 1.09009 * 109.50126 * 182.40341 * 21 12 11 35 35 H 1.09001 * 109.53885 * 62.30863 * 21 12 11 36 36 H 1.09001 * 109.46208 * 294.18155 * 22 9 8 37 37 H 1.09003 * 109.46095 * 54.15856 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3076 1.0846 0.0000 4 6 3.5770 0.6555 0.0006 5 35 5.1128 1.7588 0.0001 6 7 3.5783 -0.6481 -0.0039 7 6 2.3045 -1.0804 0.0005 8 6 1.8536 -2.5184 0.0003 9 7 1.7077 -2.9857 -1.3847 10 6 2.8630 -2.5871 -2.1990 11 6 2.6114 -2.9614 -3.6614 12 6 2.3873 -4.4726 -3.7651 13 6 2.0804 -4.8406 -5.1939 14 1 1.1395 -5.3101 -5.4405 15 6 3.0008 -4.5781 -6.1863 16 7 4.1463 -4.0059 -5.8861 17 14 2.6208 -5.0349 -7.9573 18 1 1.9436 -3.8961 -8.6279 19 1 3.8853 -5.3481 -8.6700 20 1 1.7312 -6.2238 -7.9818 21 6 1.2094 -4.8684 -2.8704 22 6 1.5015 -4.4388 -1.4310 23 1 -0.3633 1.0277 0.0005 24 1 -0.3633 -0.5135 -0.8901 25 1 -0.3634 -0.5141 0.8898 26 1 2.5938 -3.1314 0.5145 27 1 0.8953 -2.5988 0.5136 28 1 3.0088 -1.5098 -2.1198 29 1 3.7546 -3.1015 -1.8407 30 1 3.4757 -2.6796 -4.2630 31 1 1.7278 -2.4367 -4.0246 32 1 3.2852 -4.9973 -3.4386 33 1 4.7939 -3.8215 -6.5843 34 1 1.0718 -5.9492 -2.9069 35 1 0.3032 -4.3743 -3.2209 36 1 2.3996 -4.9445 -1.0762 37 1 0.6584 -4.7065 -0.7940 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001249390028.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:13:11 Heat of formation + Delta-G solvation = 7.424122 kcal Electronic energy + Delta-G solvation = -20485.735968 eV Core-core repulsion = 17310.103979 eV Total energy + Delta-G solvation = -3175.631989 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 328.053 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -44.58839 -39.87235 -36.70075 -35.45782 -34.27773 -33.02165 -32.40917 -31.47413 -29.18288 -27.34860 -25.91241 -23.83887 -23.51263 -23.10536 -21.66955 -20.31694 -18.49263 -18.18827 -18.11475 -16.83661 -16.29212 -16.17113 -15.85092 -15.37630 -14.86258 -14.65456 -14.42757 -14.24910 -13.96581 -13.53544 -13.26427 -13.23333 -13.13451 -12.85374 -12.73189 -12.57336 -12.29510 -12.05581 -12.03237 -11.94588 -11.86814 -11.74003 -11.36181 -10.79841 -10.65697 -10.38118 -9.76549 -9.21655 -8.07080 -6.21383 -0.68751 0.10669 1.28128 1.41480 1.41660 1.52276 1.87084 2.44185 3.09755 3.20112 3.43707 3.61588 3.98597 4.20538 4.27895 4.31254 4.38141 4.43274 4.61669 4.69892 4.72852 4.78864 4.84184 4.90904 4.96299 4.99915 5.10694 5.20342 5.24151 5.33955 5.56328 5.62308 5.97507 5.99392 6.19022 6.29354 6.34679 6.40076 6.91658 7.47007 8.97570 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.015649 B = 0.003628 C = 0.003149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1788.814126 B = 7715.902998 C = 8890.980123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.005 3.995 3 O -0.190 6.190 4 C 0.145 3.855 5 Br 0.138 6.862 6 N -0.456 5.456 7 C -0.033 4.033 8 C 0.138 3.862 9 N -0.528 5.528 10 C 0.085 3.915 11 C -0.092 4.092 12 C 0.043 3.957 13 C -0.531 4.531 14 H 0.056 0.944 15 C 0.009 3.991 16 N -0.921 5.921 17 Si 0.954 3.046 18 H -0.276 1.276 19 H -0.286 1.286 20 H -0.265 1.265 21 C -0.098 4.098 22 C 0.065 3.935 23 H 0.094 0.906 24 H 0.102 0.898 25 H 0.121 0.879 26 H 0.043 0.957 27 H 0.130 0.870 28 H 0.049 0.951 29 H 0.002 0.998 30 H 0.053 0.947 31 H 0.031 0.969 32 H -0.017 1.017 33 H 0.259 0.741 34 H 0.058 0.942 35 H 0.058 0.942 36 H 0.018 0.982 37 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.018 12.471 17.080 21.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.050 4.050 3 O -0.077 6.077 4 C -0.139 4.139 5 Br 0.218 6.782 6 N -0.189 5.189 7 C -0.154 4.154 8 C 0.010 3.990 9 N -0.253 5.253 10 C -0.043 4.043 11 C -0.131 4.131 12 C 0.024 3.976 13 C -0.569 4.569 14 H 0.074 0.926 15 C -0.189 4.189 16 N -0.561 5.561 17 Si 0.780 3.220 18 H -0.202 1.202 19 H -0.212 1.212 20 H -0.189 1.189 21 C -0.135 4.135 22 C -0.062 4.062 23 H 0.113 0.887 24 H 0.120 0.880 25 H 0.139 0.861 26 H 0.061 0.939 27 H 0.148 0.852 28 H 0.068 0.932 29 H 0.020 0.980 30 H 0.071 0.929 31 H 0.050 0.950 32 H 0.001 0.999 33 H 0.068 0.932 34 H 0.076 0.924 35 H 0.077 0.923 36 H 0.037 0.963 37 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -4.192 12.820 16.803 21.547 hybrid contribution 0.646 -0.268 -0.963 1.190 sum -3.545 12.552 15.840 20.519 Atomic orbital electron populations 1.20651 0.79755 1.05840 1.06120 1.24247 0.96648 0.82681 1.01450 1.84496 1.16357 1.36929 1.69947 1.27655 0.85577 0.90957 1.09664 1.96930 1.22018 1.61545 1.97710 1.70491 1.24795 1.08456 1.15109 1.21621 0.87133 0.98372 1.08319 1.20544 1.01913 0.86336 0.90176 1.62192 1.39836 1.14228 1.09079 1.21835 0.90159 0.97963 0.94390 1.21411 0.99961 0.98656 0.93024 1.18674 0.92950 0.92125 0.93830 1.21607 1.02459 1.39105 0.93690 0.92612 1.25799 0.94879 0.95143 1.03069 1.70055 1.08422 1.43754 1.33908 0.85612 0.77507 0.78806 0.80079 1.20173 1.21155 1.18938 1.21530 0.98789 0.99473 0.93751 1.22124 1.00363 0.85871 0.97830 0.88720 0.87978 0.86066 0.93892 0.85219 0.93228 0.97956 0.92869 0.95026 0.99852 0.93239 0.92362 0.92327 0.96323 0.87682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.99 9.95 71.24 0.71 -0.28 16 2 C 0.01 0.13 7.38 24.78 0.18 0.32 16 3 O -0.19 -5.24 10.78 -4.60 -0.05 -5.29 16 4 C 0.14 4.27 8.90 130.46 1.16 5.43 16 5 Br 0.14 3.15 34.13 -20.37 -0.70 2.45 16 6 N -0.46 -15.31 10.39 -298.90 -3.11 -18.42 16 7 C -0.03 -0.98 4.86 41.24 0.20 -0.78 16 8 C 0.14 3.74 5.61 85.56 0.48 4.22 16 9 N -0.53 -18.04 4.80 -900.91 -4.32 -22.36 16 10 C 0.08 3.65 4.95 86.33 0.43 4.08 16 11 C -0.09 -4.68 5.12 30.65 0.16 -4.52 16 12 C 0.04 2.22 2.16 -11.46 -0.02 2.20 16 13 C -0.53 -29.96 8.56 25.60 0.22 -29.75 16 14 H 0.06 3.05 7.75 -2.91 -0.02 3.03 16 15 C 0.01 0.52 5.31 84.65 0.45 0.97 16 16 N -0.92 -55.51 11.37 21.45 0.24 -55.27 16 17 Si 0.95 44.61 29.54 68.60 2.03 46.63 16 18 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 19 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16 20 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 21 C -0.10 -3.98 5.32 30.65 0.16 -3.81 16 22 C 0.07 2.17 5.42 86.33 0.47 2.64 16 23 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 24 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 25 H 0.12 1.10 8.14 -2.39 -0.02 1.08 16 26 H 0.04 1.23 8.08 -2.39 -0.02 1.21 16 27 H 0.13 2.43 7.89 -2.38 -0.02 2.42 16 28 H 0.05 2.16 5.96 -2.39 -0.01 2.15 16 29 H 0.00 0.10 8.14 -2.39 -0.02 0.08 16 30 H 0.05 3.09 6.17 -2.38 -0.01 3.08 16 31 H 0.03 1.61 8.14 -2.39 -0.02 1.59 16 32 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16 33 H 0.26 14.85 8.31 -92.71 -0.77 14.08 16 34 H 0.06 2.26 8.14 -2.38 -0.02 2.24 16 35 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 36 H 0.02 0.65 8.14 -2.39 -0.02 0.63 16 37 H 0.11 2.62 8.12 -2.39 -0.02 2.60 16 Total: -1.00 -68.63 321.44 -0.25 -68.88 By element: Atomic # 1 Polarization: 1.62 SS G_CDS: 1.07 Total: 2.68 kcal Atomic # 6 Polarization: -23.90 SS G_CDS: 4.59 Total: -19.31 kcal Atomic # 7 Polarization: -88.86 SS G_CDS: -7.19 Total: -96.05 kcal Atomic # 8 Polarization: -5.24 SS G_CDS: -0.05 Total: -5.29 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.63 kcal Atomic # 35 Polarization: 3.15 SS G_CDS: -0.70 Total: 2.45 kcal Total: -68.63 -0.25 -68.88 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001249390028.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.299 kcal (2) G-P(sol) polarization free energy of solvation -68.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.875 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds