Wall clock time and date at job start Tue Mar 31 2020 15:30:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46894 * 109.47368 * 2 1 4 4 C 1.46902 * 111.00460 * 298.39391 * 3 2 1 5 5 C 1.50695 * 109.47063 * 288.67994 * 4 3 2 6 6 H 1.08000 * 119.99950 * 0.34274 * 5 4 3 7 7 C 1.37878 * 120.00284 * 180.34607 * 5 4 3 8 8 N 1.31511 * 120.00362 * 179.97438 * 7 5 4 9 9 Si 1.86806 * 119.99717 * 359.97438 * 7 5 4 10 10 H 1.48503 * 109.46802 * 90.00001 * 9 7 5 11 11 H 1.48495 * 109.47204 * 209.99904 * 9 7 5 12 12 H 1.48502 * 109.47175 * 330.00373 * 9 7 5 13 13 C 1.46902 * 110.99844 * 62.34564 * 3 2 1 14 14 C 1.50704 * 109.47066 * 66.04800 * 13 3 2 15 15 C 1.38221 * 120.37776 * 89.99776 * 14 13 3 16 16 N 1.31874 * 120.89136 * 179.97438 * 15 14 13 17 17 C 1.31903 * 121.76882 * 0.02562 * 16 15 14 18 18 Br 1.89103 * 119.66767 * 179.97438 * 17 16 15 19 19 C 1.38818 * 120.66271 * 0.02562 * 17 16 15 20 20 O 1.35928 * 120.47661 * 179.97438 * 19 17 16 21 21 C 1.42899 * 117.00165 * 180.02562 * 20 19 17 22 22 C 1.38584 * 120.37956 * 270.32523 * 14 13 3 23 23 H 1.09002 * 109.47552 * 182.28313 * 1 2 3 24 24 H 1.09005 * 109.46803 * 302.28488 * 1 2 3 25 25 H 1.08997 * 109.47274 * 62.27914 * 1 2 3 26 26 H 1.09006 * 109.46910 * 240.00606 * 2 1 3 27 27 H 1.08997 * 109.47341 * 120.00450 * 2 1 3 28 28 H 1.09005 * 109.46835 * 48.67601 * 4 3 2 29 29 H 1.08997 * 109.47556 * 168.67095 * 4 3 2 30 30 H 0.97001 * 120.00288 * 179.97438 * 8 7 5 31 31 H 1.08995 * 109.47154 * 306.04840 * 13 3 2 32 32 H 1.09001 * 109.47245 * 186.04371 * 13 3 2 33 33 H 1.07998 * 119.55528 * 0.02562 * 15 14 13 34 34 H 1.09006 * 109.47243 * 60.00150 * 21 20 19 35 35 H 1.08999 * 109.47029 * 300.00530 * 21 20 19 36 36 H 1.09002 * 109.47406 * 179.97438 * 21 20 19 37 37 H 1.07993 * 120.80621 * 359.97438 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.5804 2.0988 -1.2064 5 6 2.3317 1.5735 -2.4024 6 1 3.0584 0.7841 -2.2796 7 6 2.0914 2.1006 -3.6536 8 7 2.7474 1.6426 -4.6973 9 14 0.8339 3.4656 -3.8662 10 1 1.5023 4.7827 -3.7123 11 1 0.2271 3.3734 -5.2184 12 1 -0.2273 3.3258 -2.8368 13 6 1.5950 2.0934 1.2148 14 6 2.2642 1.4765 2.4160 15 6 3.4889 1.9462 2.8518 16 7 4.0833 1.4142 3.9020 17 6 3.5410 0.4191 4.5769 18 35 4.4460 -0.2995 6.0738 19 6 2.3132 -0.1067 4.1987 20 8 1.7581 -1.1326 4.8966 21 6 0.4927 -1.6167 4.4422 22 6 1.6619 0.4274 3.0921 23 1 -0.3634 -1.0268 0.0409 24 1 -0.3633 0.5489 0.8688 25 1 -0.3634 0.4780 -0.9097 26 1 1.8933 -0.5138 -0.8901 27 1 1.8933 -0.5139 0.8899 28 1 0.5113 1.9429 -1.3517 29 1 1.7798 3.1641 -1.0912 30 1 2.5781 2.0132 -5.5776 31 1 0.5131 2.0153 1.3216 32 1 1.8779 3.1435 1.1407 33 1 3.9651 2.7603 2.3258 34 1 0.5881 -1.9771 3.4179 35 1 -0.2388 -0.8093 4.4766 36 1 0.1639 -2.4332 5.0851 37 1 0.7075 0.0375 2.7704 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001249838800.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:30:28 Heat of formation + Delta-G solvation = 12.736638 kcal Electronic energy + Delta-G solvation = -20269.706670 eV Core-core repulsion = 17094.305049 eV Total energy + Delta-G solvation = -3175.401621 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 328.053 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.89415 -38.56566 -37.47466 -33.34672 -32.38755 -31.60263 -30.41617 -29.65509 -28.08006 -27.27930 -25.11617 -23.27546 -23.10809 -21.80994 -19.51630 -17.82212 -17.45646 -16.79581 -16.59619 -16.19183 -15.32785 -15.05201 -14.38417 -14.33762 -14.00113 -13.77835 -13.54724 -13.14441 -12.67441 -12.47602 -12.16359 -11.88682 -11.69411 -11.64704 -11.46271 -11.26924 -10.85955 -10.72116 -10.60642 -10.41419 -10.16658 -10.04249 -9.68535 -9.54643 -9.36816 -8.62230 -8.42550 -7.49515 -6.10127 -4.07766 0.82094 1.10358 1.38047 2.88084 3.22792 3.30089 3.31163 3.52164 4.35751 4.38554 4.42740 4.76829 4.79837 4.87993 4.89880 4.92734 5.01507 5.21679 5.23016 5.48090 5.53906 5.61858 5.70261 5.83456 5.86519 6.05612 6.19868 6.27991 6.34858 6.62489 6.79895 6.88325 6.91742 7.50218 7.67317 7.75216 7.88449 8.58156 8.99470 9.50759 11.03039 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.025325 B = 0.003184 C = 0.003000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.381099 B = 8792.094543 C = 9330.514206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.055 3.945 3 N -0.516 5.516 4 C 0.158 3.842 5 C -0.508 4.508 6 H 0.080 0.920 7 C 0.069 3.931 8 N -0.899 5.899 9 Si 0.873 3.127 10 H -0.275 1.275 11 H -0.286 1.286 12 H -0.269 1.269 13 C 0.081 3.919 14 C -0.054 4.054 15 C 0.091 3.909 16 N -0.425 5.425 17 C 0.083 3.917 18 Br -0.007 7.007 19 C 0.108 3.892 20 O -0.299 6.299 21 C 0.023 3.977 22 C -0.155 4.155 23 H 0.052 0.948 24 H 0.044 0.956 25 H 0.068 0.932 26 H 0.088 0.912 27 H 0.055 0.945 28 H -0.001 1.001 29 H 0.024 0.976 30 H 0.264 0.736 31 H 0.045 0.955 32 H 0.087 0.913 33 H 0.170 0.830 34 H 0.060 0.940 35 H 0.057 0.943 36 H 0.105 0.895 37 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.281 -4.401 21.790 22.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.251 4.251 2 C -0.074 4.074 3 N -0.239 5.239 4 C 0.033 3.967 5 C -0.546 4.546 6 H 0.098 0.902 7 C -0.132 4.132 8 N -0.538 5.538 9 Si 0.700 3.300 10 H -0.201 1.201 11 H -0.212 1.212 12 H -0.194 1.194 13 C -0.047 4.047 14 C -0.057 4.057 15 C -0.069 4.069 16 N -0.134 5.134 17 C -0.134 4.134 18 Br 0.076 6.924 19 C 0.057 3.943 20 O -0.211 6.211 21 C -0.072 4.072 22 C -0.183 4.183 23 H 0.071 0.929 24 H 0.063 0.937 25 H 0.087 0.913 26 H 0.107 0.893 27 H 0.074 0.926 28 H 0.016 0.984 29 H 0.042 0.958 30 H 0.074 0.926 31 H 0.063 0.937 32 H 0.105 0.895 33 H 0.187 0.813 34 H 0.079 0.921 35 H 0.076 0.924 36 H 0.123 0.877 37 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -2.529 -4.444 22.579 23.150 hybrid contribution -2.742 0.606 -1.141 3.031 sum -5.271 -3.838 21.438 22.407 Atomic orbital electron populations 1.22441 0.99424 1.01268 1.01948 1.22083 0.91922 0.91104 1.02244 1.62252 1.59001 1.01871 1.00793 1.20287 0.94677 0.93832 0.87940 1.20976 1.22902 1.21359 0.89352 0.90157 1.24884 0.95878 0.96593 0.95879 1.69885 1.41787 1.42775 0.99313 0.86907 0.82317 0.83150 0.77616 1.20096 1.21211 1.19356 1.21148 0.96748 0.98511 0.88344 1.20932 0.95077 0.94046 0.95666 1.22663 0.92092 0.99928 0.92260 1.67491 1.32787 1.06869 1.06267 1.21911 0.92710 0.99303 0.99476 1.96710 1.77715 1.82725 1.35232 1.19529 0.92950 0.89729 0.92068 1.86181 1.35854 1.46468 1.52556 1.23171 0.82907 0.99745 1.01403 1.21657 1.02147 0.98836 0.95643 0.92911 0.93692 0.91328 0.89315 0.92642 0.98353 0.95843 0.92614 0.93740 0.89461 0.81261 0.92128 0.92445 0.87696 0.83641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.85 9.16 37.16 0.34 -2.51 16 2 C 0.05 0.94 5.57 -3.83 -0.02 0.92 16 3 N -0.52 -9.74 4.65 -237.52 -1.11 -10.84 16 4 C 0.16 3.52 3.65 -4.98 -0.02 3.51 16 5 C -0.51 -13.74 9.12 -34.44 -0.31 -14.05 16 6 H 0.08 2.41 7.70 -52.49 -0.40 2.00 16 7 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 8 N -0.90 -26.85 13.96 55.43 0.77 -26.08 16 9 Si 0.87 20.58 27.46 -169.99 -4.67 15.92 16 10 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 11 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 12 H -0.27 -6.02 6.55 56.52 0.37 -5.65 16 13 C 0.08 1.21 4.93 -4.97 -0.02 1.18 16 14 C -0.05 -0.75 4.90 -104.50 -0.51 -1.26 16 15 C 0.09 1.30 10.85 -17.54 -0.19 1.11 16 16 N -0.42 -6.48 10.32 -11.53 -0.12 -6.60 16 17 C 0.08 1.20 7.18 -17.31 -0.12 1.08 16 18 Br -0.01 -0.10 33.33 -68.01 -2.27 -2.36 16 19 C 0.11 1.42 6.69 -39.06 -0.26 1.16 16 20 O -0.30 -3.44 9.84 -19.51 -0.19 -3.63 16 21 C 0.02 0.17 9.83 101.05 0.99 1.17 16 22 C -0.16 -1.95 7.04 -39.14 -0.28 -2.22 16 23 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 24 H 0.04 0.58 5.64 -51.93 -0.29 0.29 16 25 H 0.07 1.18 6.33 -51.93 -0.33 0.85 16 26 H 0.09 1.77 7.19 -51.93 -0.37 1.40 16 27 H 0.06 0.87 5.99 -51.93 -0.31 0.56 16 28 H 0.00 -0.02 4.97 -51.93 -0.26 -0.28 16 29 H 0.02 0.52 7.23 -51.93 -0.38 0.15 16 30 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 31 H 0.04 0.62 5.98 -51.93 -0.31 0.31 16 32 H 0.09 1.24 7.82 -51.93 -0.41 0.83 16 33 H 0.17 2.19 8.06 -52.49 -0.42 1.77 16 34 H 0.06 0.44 7.69 -51.93 -0.40 0.04 16 35 H 0.06 0.38 7.71 -51.93 -0.40 -0.02 16 36 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.15 1.55 5.73 -52.49 -0.30 1.25 16 LS Contribution 317.36 15.07 4.78 4.78 Total: -1.00 -30.44 317.36 -7.89 -38.34 By element: Atomic # 1 Polarization: 3.16 SS G_CDS: -4.59 Total: -1.44 kcal Atomic # 6 Polarization: -7.58 SS G_CDS: -0.51 Total: -8.09 kcal Atomic # 7 Polarization: -43.07 SS G_CDS: -0.45 Total: -43.52 kcal Atomic # 8 Polarization: -3.44 SS G_CDS: -0.19 Total: -3.63 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -4.67 Total: 15.92 kcal Atomic # 35 Polarization: -0.10 SS G_CDS: -2.27 Total: -2.36 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -30.44 -7.89 -38.34 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001249838800.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.076 kcal (2) G-P(sol) polarization free energy of solvation -30.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.339 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds