Wall clock time and date at job start Tue Mar 31 2020 15:30:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46894 * 109.47368 * 2 1 4 4 C 1.46902 * 111.00460 * 298.39391 * 3 2 1 5 5 C 1.50695 * 109.47063 * 288.67994 * 4 3 2 6 6 H 1.08000 * 119.99950 * 0.34274 * 5 4 3 7 7 C 1.37878 * 120.00284 * 180.34607 * 5 4 3 8 8 N 1.31511 * 120.00362 * 179.97438 * 7 5 4 9 9 Si 1.86806 * 119.99717 * 359.97438 * 7 5 4 10 10 H 1.48503 * 109.46802 * 90.00001 * 9 7 5 11 11 H 1.48495 * 109.47204 * 209.99904 * 9 7 5 12 12 H 1.48502 * 109.47175 * 330.00373 * 9 7 5 13 13 C 1.46902 * 110.99844 * 62.34564 * 3 2 1 14 14 C 1.50704 * 109.47066 * 66.04800 * 13 3 2 15 15 C 1.38221 * 120.37776 * 89.99776 * 14 13 3 16 16 N 1.31874 * 120.89136 * 179.97438 * 15 14 13 17 17 C 1.31903 * 121.76882 * 0.02562 * 16 15 14 18 18 Br 1.89103 * 119.66767 * 179.97438 * 17 16 15 19 19 C 1.38818 * 120.66271 * 0.02562 * 17 16 15 20 20 O 1.35928 * 120.47661 * 179.97438 * 19 17 16 21 21 C 1.42899 * 117.00165 * 180.02562 * 20 19 17 22 22 C 1.38584 * 120.37956 * 270.32523 * 14 13 3 23 23 H 1.09002 * 109.47552 * 182.28313 * 1 2 3 24 24 H 1.09005 * 109.46803 * 302.28488 * 1 2 3 25 25 H 1.08997 * 109.47274 * 62.27914 * 1 2 3 26 26 H 1.09006 * 109.46910 * 240.00606 * 2 1 3 27 27 H 1.08997 * 109.47341 * 120.00450 * 2 1 3 28 28 H 1.09005 * 109.46835 * 48.67601 * 4 3 2 29 29 H 1.08997 * 109.47556 * 168.67095 * 4 3 2 30 30 H 0.97001 * 120.00288 * 179.97438 * 8 7 5 31 31 H 1.08995 * 109.47154 * 306.04840 * 13 3 2 32 32 H 1.09001 * 109.47245 * 186.04371 * 13 3 2 33 33 H 1.07998 * 119.55528 * 0.02562 * 15 14 13 34 34 H 1.09006 * 109.47243 * 60.00150 * 21 20 19 35 35 H 1.08999 * 109.47029 * 300.00530 * 21 20 19 36 36 H 1.09002 * 109.47406 * 179.97438 * 21 20 19 37 37 H 1.07993 * 120.80621 * 359.97438 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.5804 2.0988 -1.2064 5 6 2.3317 1.5735 -2.4024 6 1 3.0584 0.7841 -2.2796 7 6 2.0914 2.1006 -3.6536 8 7 2.7474 1.6426 -4.6973 9 14 0.8339 3.4656 -3.8662 10 1 1.5023 4.7827 -3.7123 11 1 0.2271 3.3734 -5.2184 12 1 -0.2273 3.3258 -2.8368 13 6 1.5950 2.0934 1.2148 14 6 2.2642 1.4765 2.4160 15 6 3.4889 1.9462 2.8518 16 7 4.0833 1.4142 3.9020 17 6 3.5410 0.4191 4.5769 18 35 4.4460 -0.2995 6.0738 19 6 2.3132 -0.1067 4.1987 20 8 1.7581 -1.1326 4.8966 21 6 0.4927 -1.6167 4.4422 22 6 1.6619 0.4274 3.0921 23 1 -0.3634 -1.0268 0.0409 24 1 -0.3633 0.5489 0.8688 25 1 -0.3634 0.4780 -0.9097 26 1 1.8933 -0.5138 -0.8901 27 1 1.8933 -0.5139 0.8899 28 1 0.5113 1.9429 -1.3517 29 1 1.7798 3.1641 -1.0912 30 1 2.5781 2.0132 -5.5776 31 1 0.5131 2.0153 1.3216 32 1 1.8779 3.1435 1.1407 33 1 3.9651 2.7603 2.3258 34 1 0.5881 -1.9771 3.4179 35 1 -0.2388 -0.8093 4.4766 36 1 0.1639 -2.4332 5.0851 37 1 0.7075 0.0375 2.7704 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001249838800.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:30:27 Heat of formation + Delta-G solvation = -8.468197 kcal Electronic energy + Delta-G solvation = -20270.626181 eV Core-core repulsion = 17094.305049 eV Total energy + Delta-G solvation = -3176.321132 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 328.053 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.89469 -39.56800 -38.76662 -34.93072 -33.98960 -32.61651 -31.58182 -31.02993 -29.32804 -28.30440 -26.40443 -24.74290 -24.14955 -23.11875 -20.96384 -18.94721 -18.65921 -18.44647 -17.59490 -17.08795 -16.65133 -16.58968 -16.01785 -15.26580 -15.12605 -14.91959 -14.67954 -14.47963 -14.35988 -13.73691 -13.30871 -13.28827 -12.85771 -12.81585 -12.54766 -12.42194 -12.35023 -12.14107 -11.93721 -11.84000 -11.55634 -11.47137 -11.39908 -10.75963 -10.73121 -10.58233 -9.43132 -8.93353 -8.23765 -6.26529 -0.23861 0.09897 0.35611 1.38625 1.39511 1.49434 2.07463 2.37656 2.44725 3.10317 3.30960 3.39432 3.55074 3.80802 3.89089 3.96043 4.21928 4.26682 4.36975 4.37926 4.47080 4.61344 4.64721 4.73475 4.76070 4.77766 4.90981 5.06888 5.11492 5.26129 5.28205 5.44744 5.59778 5.99608 6.03473 6.38272 6.62553 6.66920 6.80442 7.36579 8.93309 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.025325 B = 0.003184 C = 0.003000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.381099 B = 8792.094543 C = 9330.514206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.057 3.943 3 N -0.538 5.538 4 C 0.169 3.831 5 C -0.510 4.510 6 H 0.031 0.969 7 C 0.006 3.994 8 N -0.953 5.953 9 Si 0.946 3.054 10 H -0.267 1.267 11 H -0.288 1.288 12 H -0.243 1.243 13 C 0.086 3.914 14 C -0.059 4.059 15 C 0.079 3.921 16 N -0.445 5.445 17 C 0.062 3.938 18 Br 0.000 7.000 19 C 0.112 3.888 20 O -0.308 6.308 21 C 0.011 3.989 22 C -0.148 4.148 23 H 0.075 0.925 24 H 0.072 0.928 25 H 0.043 0.957 26 H 0.047 0.953 27 H 0.073 0.927 28 H 0.007 0.993 29 H 0.031 0.969 30 H 0.265 0.735 31 H 0.065 0.935 32 H 0.094 0.906 33 H 0.175 0.825 34 H 0.065 0.935 35 H 0.072 0.928 36 H 0.128 0.872 37 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.846 -3.881 23.588 24.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.071 4.071 3 N -0.261 5.261 4 C 0.042 3.958 5 C -0.548 4.548 6 H 0.050 0.950 7 C -0.191 4.191 8 N -0.594 5.594 9 Si 0.770 3.230 10 H -0.192 1.192 11 H -0.214 1.214 12 H -0.166 1.166 13 C -0.042 4.042 14 C -0.062 4.062 15 C -0.081 4.081 16 N -0.155 5.155 17 C -0.155 4.155 18 Br 0.083 6.917 19 C 0.060 3.940 20 O -0.220 6.220 21 C -0.083 4.083 22 C -0.175 4.175 23 H 0.094 0.906 24 H 0.090 0.910 25 H 0.062 0.938 26 H 0.065 0.935 27 H 0.091 0.909 28 H 0.025 0.975 29 H 0.049 0.951 30 H 0.074 0.926 31 H 0.083 0.917 32 H 0.113 0.887 33 H 0.192 0.808 34 H 0.084 0.916 35 H 0.090 0.910 36 H 0.146 0.854 37 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -5.104 -3.939 24.419 25.256 hybrid contribution -1.874 0.290 -1.602 2.483 sum -6.978 -3.649 22.817 24.138 Atomic orbital electron populations 1.22344 0.97017 1.02992 1.01853 1.21993 0.93892 0.90127 1.01068 1.62040 1.60242 1.02604 1.01204 1.20018 0.94129 0.94069 0.87580 1.21248 1.21995 1.19884 0.91693 0.95050 1.25850 0.98299 0.99570 0.95383 1.70065 1.44281 1.45013 1.00018 0.85735 0.79885 0.79445 0.77977 1.19188 1.21370 1.16644 1.21152 0.97974 0.98501 0.86579 1.20831 0.95029 0.94717 0.95575 1.22830 0.92569 1.00357 0.92355 1.67470 1.33537 1.07632 1.06867 1.22212 0.93674 0.99619 0.99989 1.96694 1.77716 1.82525 1.34723 1.19537 0.92533 0.89873 0.92023 1.86187 1.37524 1.45672 1.52584 1.23530 0.81486 1.00953 1.02330 1.21862 1.02753 0.97936 0.94983 0.90639 0.90968 0.93773 0.93465 0.90872 0.97514 0.95121 0.92631 0.91662 0.88728 0.80765 0.91605 0.90959 0.85382 0.81260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.91 9.16 71.98 0.66 -4.25 16 2 C 0.06 1.91 5.57 86.30 0.48 2.39 16 3 N -0.54 -19.67 4.65 -905.39 -4.21 -23.88 16 4 C 0.17 7.32 3.65 85.55 0.31 7.63 16 5 C -0.51 -28.31 9.12 25.60 0.23 -28.08 16 6 H 0.03 1.99 7.70 -2.91 -0.02 1.97 16 7 C 0.01 0.32 5.47 84.66 0.46 0.78 16 8 N -0.95 -58.87 13.96 21.45 0.30 -58.57 16 9 Si 0.95 42.07 27.46 68.60 1.88 43.96 16 10 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 11 H -0.29 -12.78 7.11 99.48 0.71 -12.07 16 12 H -0.24 -9.72 6.55 99.48 0.65 -9.07 16 13 C 0.09 2.32 4.93 85.56 0.42 2.74 16 14 C -0.06 -1.50 4.90 -19.78 -0.10 -1.59 16 15 C 0.08 2.19 10.85 84.68 0.92 3.10 16 16 N -0.45 -13.29 10.32 -190.38 -1.96 -15.26 16 17 C 0.06 1.72 7.18 84.82 0.61 2.33 16 18 Br 0.00 0.00 33.33 -20.37 -0.68 -0.68 16 19 C 0.11 2.69 6.69 22.61 0.15 2.84 16 20 O -0.31 -6.27 9.84 -92.73 -0.91 -7.18 16 21 C 0.01 0.13 9.83 113.37 1.11 1.24 16 22 C -0.15 -3.27 7.04 22.55 0.16 -3.11 16 23 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 24 H 0.07 1.53 5.64 -2.38 -0.01 1.52 16 25 H 0.04 1.41 6.33 -2.39 -0.02 1.39 16 26 H 0.05 1.95 7.19 -2.38 -0.02 1.93 16 27 H 0.07 2.16 5.99 -2.39 -0.01 2.14 16 28 H 0.01 0.31 4.97 -2.38 -0.01 0.29 16 29 H 0.03 1.30 7.23 -2.39 -0.02 1.28 16 30 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 31 H 0.07 1.52 5.98 -2.39 -0.01 1.50 16 32 H 0.09 2.43 7.82 -2.39 -0.02 2.41 16 33 H 0.18 4.43 8.06 -2.91 -0.02 4.41 16 34 H 0.07 0.71 7.69 -2.38 -0.02 0.70 16 35 H 0.07 0.65 7.71 -2.39 -0.02 0.63 16 36 H 0.13 0.89 8.14 -2.39 -0.02 0.87 16 37 H 0.17 2.84 5.73 -2.91 -0.02 2.82 16 Total: -1.00 -68.31 317.36 0.88 -67.43 By element: Atomic # 1 Polarization: 7.12 SS G_CDS: 1.03 Total: 8.16 kcal Atomic # 6 Polarization: -19.39 SS G_CDS: 5.43 Total: -13.96 kcal Atomic # 7 Polarization: -91.84 SS G_CDS: -5.88 Total: -97.71 kcal Atomic # 8 Polarization: -6.27 SS G_CDS: -0.91 Total: -7.18 kcal Atomic # 14 Polarization: 42.07 SS G_CDS: 1.88 Total: 43.96 kcal Atomic # 35 Polarization: 0.00 SS G_CDS: -0.68 Total: -0.68 kcal Total: -68.31 0.88 -67.43 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001249838800.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.961 kcal (2) G-P(sol) polarization free energy of solvation -68.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds