Wall clock time and date at job start Tue Mar 31 2020 15:16:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53008 * 109.46998 * 2 1 4 4 H 1.08997 * 109.46609 * 185.18512 * 3 2 1 5 5 C 1.50700 * 109.47018 * 305.18355 * 3 2 1 6 6 H 1.07996 * 119.99797 * 119.99869 * 5 3 2 7 7 C 1.37882 * 120.00188 * 300.00081 * 5 3 2 8 8 N 1.31513 * 120.00220 * 180.02562 * 7 5 3 9 9 Si 1.86798 * 119.99860 * 0.02562 * 7 5 3 10 10 H 1.48499 * 109.47427 * 89.99683 * 9 7 5 11 11 H 1.48495 * 109.47308 * 210.00314 * 9 7 5 12 12 H 1.48502 * 109.47041 * 329.99987 * 9 7 5 13 13 N 1.46900 * 109.46816 * 65.18281 * 3 2 1 14 14 C 1.46903 * 110.99494 * 85.92822 * 13 3 2 15 15 C 1.50704 * 109.46626 * 174.73840 * 14 13 3 16 16 C 1.38456 * 120.42963 * 259.99649 * 15 14 13 17 17 C 1.38733 * 118.49946 * 179.97438 * 16 15 14 18 18 C 1.38226 * 119.27685 * 0.02562 * 17 16 15 19 19 Br 1.89097 * 119.59577 * 180.02562 * 18 17 16 20 20 N 1.32005 * 120.80868 * 0.02562 * 18 17 16 21 21 C 1.32291 * 121.63415 * 359.68794 * 20 18 17 22 22 O 1.35682 * 119.68220 * 180.28872 * 21 20 18 23 23 C 1.42897 * 116.99495 * 0.28886 * 22 21 20 24 24 H 1.08996 * 109.47731 * 54.85706 * 1 2 3 25 25 H 1.09001 * 109.46866 * 294.85533 * 1 2 3 26 26 H 1.09000 * 109.47185 * 174.85757 * 1 2 3 27 27 H 1.08994 * 109.47397 * 120.00213 * 2 1 3 28 28 H 1.08999 * 109.46915 * 240.00154 * 2 1 3 29 29 H 0.97001 * 120.00097 * 180.02562 * 8 7 5 30 30 H 1.00892 * 111.00072 * 321.97147 * 13 3 2 31 31 H 1.08994 * 109.46864 * 294.73005 * 14 13 3 32 32 H 1.08994 * 109.47486 * 54.73692 * 14 13 3 33 33 H 1.08003 * 120.75209 * 0.02562 * 16 15 14 34 34 H 1.07999 * 120.36147 * 179.97438 * 17 16 15 35 35 H 1.09003 * 109.47074 * 299.99733 * 23 22 21 36 36 H 1.08996 * 109.47521 * 59.99827 * 23 22 21 37 37 H 1.09001 * 109.46924 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 3.1260 1.4439 -0.0929 5 6 1.4356 2.1890 -1.1613 6 1 0.8265 3.0629 -0.9832 7 6 1.6601 1.7563 -2.4510 8 7 1.1331 2.4081 -3.4644 9 14 2.7130 0.2444 -2.7589 10 1 1.8518 -0.9653 -2.7676 11 1 3.3958 0.3754 -4.0710 12 1 3.7288 0.1211 -1.6826 13 7 1.6551 2.0979 1.2571 14 6 2.6444 1.8369 2.3112 15 6 2.2858 2.6269 3.5434 16 6 2.9348 3.8166 3.8272 17 6 2.5725 4.5115 4.9719 18 6 1.5824 3.9989 5.7890 19 35 1.0810 4.9391 7.3512 20 7 0.9825 2.8612 5.4921 21 6 1.2972 2.1735 4.4066 22 8 0.6510 1.0114 4.1366 23 6 -0.3565 0.5992 5.0624 24 1 -0.3634 0.5915 -0.8403 25 1 -0.3633 0.4320 0.9325 26 1 -0.3633 -1.0235 -0.0921 27 1 1.8934 -0.5138 0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.2908 2.1034 -4.3718 30 1 0.7328 1.8099 1.5474 31 1 2.6488 0.7734 2.5500 32 1 3.6334 2.1352 1.9633 33 1 3.7050 4.1954 3.1717 34 1 3.0594 5.4424 5.2224 35 1 0.0890 0.4645 6.0481 36 1 -1.1341 1.3611 5.1162 37 1 -0.7925 -0.3426 4.7294 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255160239.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:16:12 Heat of formation + Delta-G solvation = 6.737836 kcal Electronic energy + Delta-G solvation = -20322.929616 eV Core-core repulsion = 17147.267868 eV Total energy + Delta-G solvation = -3175.661748 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 328.053 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.82795 -37.97356 -36.95122 -33.95647 -32.09612 -31.89968 -31.11809 -29.52728 -27.41364 -26.82432 -24.67466 -23.22405 -23.13230 -21.78620 -19.55280 -18.37296 -17.16007 -16.59560 -16.14262 -15.70569 -15.11570 -14.81914 -14.39772 -14.16768 -13.93781 -13.56347 -13.20224 -13.15527 -12.67692 -12.36912 -12.23917 -11.92034 -11.74261 -11.62656 -11.03594 -10.74685 -10.70543 -10.63288 -10.55788 -10.41761 -9.91516 -9.84011 -9.77947 -9.36857 -9.13291 -8.54745 -8.43277 -7.43084 -6.03618 -3.99482 0.80614 1.14861 1.16572 3.02110 3.26724 3.35335 3.38436 3.50947 4.28975 4.41264 4.76108 4.77993 4.99730 5.17354 5.21489 5.26157 5.26598 5.37981 5.54003 5.59940 5.78903 5.95569 5.98155 6.02295 6.20017 6.22992 6.28226 6.58603 6.79477 6.82875 6.99618 7.07869 7.30020 7.49865 7.71901 7.88960 8.30566 8.70216 9.07971 9.59140 11.09712 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.026176 B = 0.003137 C = 0.002965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.428334 B = 8924.613688 C = 9440.199025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.158 4.158 3 C 0.186 3.814 4 H 0.034 0.966 5 C -0.489 4.489 6 H 0.081 0.919 7 C 0.069 3.931 8 N -0.901 5.901 9 Si 0.881 3.119 10 H -0.280 1.280 11 H -0.297 1.297 12 H -0.270 1.270 13 N -0.665 5.665 14 C 0.102 3.898 15 C -0.115 4.115 16 C -0.023 4.023 17 C -0.172 4.172 18 C 0.152 3.848 19 Br -0.016 7.016 20 N -0.521 5.521 21 C 0.334 3.666 22 O -0.297 6.297 23 C 0.040 3.960 24 H 0.080 0.920 25 H 0.041 0.959 26 H 0.029 0.971 27 H 0.034 0.966 28 H 0.048 0.952 29 H 0.263 0.737 30 H 0.336 0.664 31 H 0.038 0.962 32 H 0.080 0.920 33 H 0.154 0.846 34 H 0.146 0.854 35 H 0.057 0.943 36 H 0.060 0.940 37 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.609 1.539 22.403 22.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.197 4.197 3 C 0.077 3.923 4 H 0.051 0.949 5 C -0.528 4.528 6 H 0.099 0.901 7 C -0.132 4.132 8 N -0.539 5.539 9 Si 0.711 3.289 10 H -0.207 1.207 11 H -0.225 1.225 12 H -0.195 1.195 13 N -0.296 5.296 14 C -0.028 4.028 15 C -0.119 4.119 16 C -0.050 4.050 17 C -0.195 4.195 18 C -0.063 4.063 19 Br 0.068 6.932 20 N -0.246 5.246 21 C 0.152 3.848 22 O -0.203 6.203 23 C -0.056 4.056 24 H 0.099 0.901 25 H 0.060 0.940 26 H 0.048 0.952 27 H 0.052 0.948 28 H 0.066 0.934 29 H 0.073 0.927 30 H 0.155 0.845 31 H 0.056 0.944 32 H 0.098 0.902 33 H 0.172 0.828 34 H 0.164 0.836 35 H 0.075 0.925 36 H 0.079 0.921 37 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 1.040 1.975 22.942 23.050 hybrid contribution 0.817 -1.761 -0.670 2.054 sum 1.857 0.214 22.271 22.350 Atomic orbital electron populations 1.21637 0.95781 0.99540 1.02473 1.22482 0.97337 1.00943 0.98901 1.19727 0.95995 0.88329 0.88224 0.94860 1.20876 1.31173 1.12710 0.88022 0.90069 1.24886 0.95554 0.96579 0.96148 1.69879 1.45038 1.40224 0.98808 0.86969 0.81144 0.83934 0.76806 1.20659 1.22508 1.19531 1.60746 1.04069 1.62533 1.02267 1.20758 0.97805 0.95843 0.88390 1.20212 0.96524 0.97431 0.97724 1.21431 0.97511 0.91435 0.94611 1.21812 0.99228 1.02504 0.95950 1.22236 0.95976 0.93226 0.94892 1.96756 1.92650 1.71551 1.32221 1.66920 1.29978 1.08562 1.19149 1.19602 0.90147 0.86146 0.88874 1.86318 1.50429 1.34295 1.49236 1.22882 0.89692 1.00361 0.92634 0.90135 0.93974 0.95161 0.94758 0.93392 0.92739 0.84458 0.94383 0.90184 0.82823 0.83637 0.92467 0.92149 0.88477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.75 9.40 37.16 0.35 -2.40 16 2 C -0.16 -3.33 5.22 -26.73 -0.14 -3.47 16 3 C 0.19 4.23 1.93 -68.86 -0.13 4.10 16 4 H 0.03 0.78 6.76 -51.93 -0.35 0.43 16 5 C -0.49 -13.29 7.83 -34.44 -0.27 -13.56 16 6 H 0.08 2.46 8.06 -52.49 -0.42 2.04 16 7 C 0.07 1.95 5.42 -17.82 -0.10 1.85 16 8 N -0.90 -27.05 13.96 55.43 0.77 -26.28 16 9 Si 0.88 21.52 24.32 -169.99 -4.13 17.38 16 10 H -0.28 -6.71 6.92 56.52 0.39 -6.32 16 11 H -0.30 -7.34 7.11 56.52 0.40 -6.94 16 12 H -0.27 -6.30 6.53 56.52 0.37 -5.93 16 13 N -0.67 -13.23 6.19 -109.22 -0.68 -13.91 16 14 C 0.10 1.67 5.32 -4.97 -0.03 1.64 16 15 C -0.12 -1.70 5.47 -104.31 -0.57 -2.27 16 16 C -0.02 -0.29 9.81 -39.32 -0.39 -0.68 16 17 C -0.17 -1.98 9.83 -39.40 -0.39 -2.36 16 18 C 0.15 1.96 7.16 -17.48 -0.13 1.83 16 19 Br -0.02 -0.17 33.86 -68.01 -2.30 -2.47 16 20 N -0.52 -7.50 9.18 -11.72 -0.11 -7.61 16 21 C 0.33 5.00 7.47 -17.13 -0.13 4.87 16 22 O -0.30 -4.31 9.69 -18.75 -0.18 -4.49 16 23 C 0.04 0.44 10.38 101.05 1.05 1.49 16 24 H 0.08 1.85 6.85 -51.93 -0.36 1.49 16 25 H 0.04 0.77 6.63 -51.93 -0.34 0.43 16 26 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 27 H 0.03 0.65 7.50 -51.93 -0.39 0.26 16 28 H 0.05 1.08 3.42 -51.93 -0.18 0.90 16 29 H 0.26 7.45 8.31 -40.82 -0.34 7.12 16 30 H 0.34 6.66 6.65 -39.30 -0.26 6.40 16 31 H 0.04 0.62 7.27 -51.93 -0.38 0.24 16 32 H 0.08 1.24 7.81 -51.93 -0.41 0.83 16 33 H 0.15 1.59 8.06 -52.48 -0.42 1.17 16 34 H 0.15 1.27 8.06 -52.49 -0.42 0.85 16 35 H 0.06 0.60 8.10 -51.93 -0.42 0.18 16 36 H 0.06 0.67 8.11 -51.93 -0.42 0.25 16 37 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 320.88 15.07 4.84 4.84 Total: -1.00 -30.09 320.88 -7.45 -37.55 By element: Atomic # 1 Polarization: 8.74 SS G_CDS: -4.80 Total: 3.94 kcal Atomic # 6 Polarization: -8.08 SS G_CDS: -0.86 Total: -8.94 kcal Atomic # 7 Polarization: -47.79 SS G_CDS: -0.01 Total: -47.80 kcal Atomic # 8 Polarization: -4.31 SS G_CDS: -0.18 Total: -4.49 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -4.13 Total: 17.38 kcal Atomic # 35 Polarization: -0.17 SS G_CDS: -2.30 Total: -2.47 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -30.09 -7.45 -37.55 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255160239.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.283 kcal (2) G-P(sol) polarization free energy of solvation -30.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.545 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds