Wall clock time and date at job start Tue Mar 31 2020 15:16:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53008 * 109.46998 * 2 1 4 4 H 1.08997 * 109.46609 * 185.18512 * 3 2 1 5 5 C 1.50700 * 109.47018 * 305.18355 * 3 2 1 6 6 H 1.07996 * 119.99797 * 119.99869 * 5 3 2 7 7 C 1.37882 * 120.00188 * 300.00081 * 5 3 2 8 8 N 1.31513 * 120.00220 * 180.02562 * 7 5 3 9 9 Si 1.86798 * 119.99860 * 0.02562 * 7 5 3 10 10 H 1.48499 * 109.47427 * 89.99683 * 9 7 5 11 11 H 1.48495 * 109.47308 * 210.00314 * 9 7 5 12 12 H 1.48502 * 109.47041 * 329.99987 * 9 7 5 13 13 N 1.46900 * 109.46816 * 65.18281 * 3 2 1 14 14 C 1.46903 * 110.99494 * 85.92822 * 13 3 2 15 15 C 1.50704 * 109.46626 * 174.73840 * 14 13 3 16 16 C 1.38456 * 120.42963 * 259.99649 * 15 14 13 17 17 C 1.38733 * 118.49946 * 179.97438 * 16 15 14 18 18 C 1.38226 * 119.27685 * 0.02562 * 17 16 15 19 19 Br 1.89097 * 119.59577 * 180.02562 * 18 17 16 20 20 N 1.32005 * 120.80868 * 0.02562 * 18 17 16 21 21 C 1.32291 * 121.63415 * 359.68794 * 20 18 17 22 22 O 1.35682 * 119.68220 * 180.28872 * 21 20 18 23 23 C 1.42897 * 116.99495 * 0.28886 * 22 21 20 24 24 H 1.08996 * 109.47731 * 54.85706 * 1 2 3 25 25 H 1.09001 * 109.46866 * 294.85533 * 1 2 3 26 26 H 1.09000 * 109.47185 * 174.85757 * 1 2 3 27 27 H 1.08994 * 109.47397 * 120.00213 * 2 1 3 28 28 H 1.08999 * 109.46915 * 240.00154 * 2 1 3 29 29 H 0.97001 * 120.00097 * 180.02562 * 8 7 5 30 30 H 1.00892 * 111.00072 * 321.97147 * 13 3 2 31 31 H 1.08994 * 109.46864 * 294.73005 * 14 13 3 32 32 H 1.08994 * 109.47486 * 54.73692 * 14 13 3 33 33 H 1.08003 * 120.75209 * 0.02562 * 16 15 14 34 34 H 1.07999 * 120.36147 * 179.97438 * 17 16 15 35 35 H 1.09003 * 109.47074 * 299.99733 * 23 22 21 36 36 H 1.08996 * 109.47521 * 59.99827 * 23 22 21 37 37 H 1.09001 * 109.46924 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 3.1260 1.4439 -0.0929 5 6 1.4356 2.1890 -1.1613 6 1 0.8265 3.0629 -0.9832 7 6 1.6601 1.7563 -2.4510 8 7 1.1331 2.4081 -3.4644 9 14 2.7130 0.2444 -2.7589 10 1 1.8518 -0.9653 -2.7676 11 1 3.3958 0.3754 -4.0710 12 1 3.7288 0.1211 -1.6826 13 7 1.6551 2.0979 1.2571 14 6 2.6444 1.8369 2.3112 15 6 2.2858 2.6269 3.5434 16 6 2.9348 3.8166 3.8272 17 6 2.5725 4.5115 4.9719 18 6 1.5824 3.9989 5.7890 19 35 1.0810 4.9391 7.3512 20 7 0.9825 2.8612 5.4921 21 6 1.2972 2.1735 4.4066 22 8 0.6510 1.0114 4.1366 23 6 -0.3565 0.5992 5.0624 24 1 -0.3634 0.5915 -0.8403 25 1 -0.3633 0.4320 0.9325 26 1 -0.3633 -1.0235 -0.0921 27 1 1.8934 -0.5138 0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.2908 2.1034 -4.3718 30 1 0.7328 1.8099 1.5474 31 1 2.6488 0.7734 2.5500 32 1 3.6334 2.1352 1.9633 33 1 3.7050 4.1954 3.1717 34 1 3.0594 5.4424 5.2224 35 1 0.0890 0.4645 6.0481 36 1 -1.1341 1.3611 5.1162 37 1 -0.7925 -0.3426 4.7294 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255160239.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:16:12 Heat of formation + Delta-G solvation = -15.476822 kcal Electronic energy + Delta-G solvation = -20323.892916 eV Core-core repulsion = 17147.267868 eV Total energy + Delta-G solvation = -3176.625048 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 328.053 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.84269 -38.96374 -38.57606 -35.32425 -33.92952 -32.88671 -32.47425 -30.70823 -28.80971 -28.13951 -26.03012 -24.97481 -24.16234 -22.93079 -21.33512 -19.36854 -18.51425 -18.17939 -17.24196 -17.06997 -16.75545 -16.15446 -15.50337 -15.33929 -15.22222 -14.91137 -14.80375 -14.50704 -14.18991 -14.08459 -13.35610 -13.30213 -12.84495 -12.72335 -12.57315 -12.45287 -12.29927 -12.20149 -11.69339 -11.56601 -11.51873 -11.24530 -11.11872 -10.85143 -10.80606 -10.63174 -9.48400 -8.98774 -8.20296 -6.19828 -0.21400 0.16794 0.22237 1.33797 1.37825 1.47209 2.06589 2.37042 2.48315 3.14674 3.30776 3.59861 3.77122 3.88796 4.07187 4.23769 4.28503 4.35056 4.39974 4.40738 4.49987 4.57726 4.72611 4.76690 4.79068 4.94028 5.08006 5.17489 5.20149 5.27853 5.30354 5.59263 5.75554 6.04631 6.10114 6.48322 6.71864 6.73424 6.85417 7.43178 8.96998 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.026176 B = 0.003137 C = 0.002965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.428334 B = 8924.613688 C = 9440.199025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.155 4.155 3 C 0.191 3.809 4 H 0.033 0.967 5 C -0.484 4.484 6 H 0.034 0.966 7 C 0.014 3.986 8 N -0.951 5.951 9 Si 0.941 3.059 10 H -0.270 1.270 11 H -0.302 1.302 12 H -0.248 1.248 13 N -0.675 5.675 14 C 0.109 3.891 15 C -0.136 4.136 16 C -0.020 4.020 17 C -0.165 4.165 18 C 0.138 3.862 19 Br 0.003 6.997 20 N -0.534 5.534 21 C 0.321 3.679 22 O -0.313 6.313 23 C 0.037 3.963 24 H 0.042 0.958 25 H 0.054 0.946 26 H 0.054 0.946 27 H 0.063 0.937 28 H 0.038 0.962 29 H 0.263 0.737 30 H 0.335 0.665 31 H 0.041 0.959 32 H 0.088 0.912 33 H 0.175 0.825 34 H 0.176 0.824 35 H 0.060 0.940 36 H 0.054 0.946 37 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.799 0.574 24.298 24.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.194 4.194 3 C 0.081 3.919 4 H 0.050 0.950 5 C -0.522 4.522 6 H 0.052 0.948 7 C -0.182 4.182 8 N -0.593 5.593 9 Si 0.769 3.231 10 H -0.196 1.196 11 H -0.231 1.231 12 H -0.172 1.172 13 N -0.306 5.306 14 C -0.021 4.021 15 C -0.140 4.140 16 C -0.046 4.046 17 C -0.188 4.188 18 C -0.077 4.077 19 Br 0.087 6.913 20 N -0.259 5.259 21 C 0.140 3.860 22 O -0.219 6.219 23 C -0.057 4.057 24 H 0.062 0.938 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.081 0.919 28 H 0.056 0.944 29 H 0.072 0.928 30 H 0.154 0.846 31 H 0.059 0.941 32 H 0.106 0.894 33 H 0.192 0.808 34 H 0.193 0.807 35 H 0.079 0.921 36 H 0.073 0.927 37 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 2.232 1.007 24.881 25.002 hybrid contribution 0.375 -1.320 -1.117 1.769 sum 2.607 -0.312 23.765 23.909 Atomic orbital electron populations 1.21545 0.95311 1.00449 1.01557 1.22407 0.97781 0.99513 0.99715 1.19498 0.95330 0.89058 0.87966 0.94950 1.21068 1.29851 1.11355 0.89957 0.94768 1.25653 0.97003 0.99698 0.95850 1.70039 1.47388 1.42539 0.99323 0.85974 0.79936 0.80304 0.76878 1.19622 1.23053 1.17165 1.60586 1.04935 1.62611 1.02514 1.20715 0.96984 0.96479 0.87916 1.20172 0.97784 0.98528 0.97469 1.21744 0.97354 0.90515 0.95025 1.22138 0.98445 1.03158 0.95015 1.22700 0.96167 0.93054 0.95782 1.96769 1.92594 1.70826 1.31072 1.66956 1.30514 1.09239 1.19198 1.19743 0.90476 0.86530 0.89247 1.86284 1.51071 1.34291 1.50291 1.23055 0.88972 1.01109 0.92602 0.93848 0.92662 0.92738 0.91877 0.94362 0.92843 0.84584 0.94071 0.89398 0.80798 0.80687 0.92087 0.92692 0.86219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.08 9.40 71.98 0.68 -4.40 16 2 C -0.16 -6.20 5.22 30.60 0.16 -6.04 16 3 C 0.19 8.49 1.93 44.17 0.09 8.58 16 4 H 0.03 1.46 6.76 -2.39 -0.02 1.45 16 5 C -0.48 -26.82 7.83 25.60 0.20 -26.62 16 6 H 0.03 2.17 8.06 -2.91 -0.02 2.14 16 7 C 0.01 0.82 5.42 84.66 0.46 1.28 16 8 N -0.95 -58.99 13.96 21.45 0.30 -58.69 16 9 Si 0.94 44.06 24.32 68.60 1.67 45.73 16 10 H -0.27 -12.14 6.92 99.48 0.69 -11.45 16 11 H -0.30 -14.31 7.11 99.48 0.71 -13.60 16 12 H -0.25 -10.61 6.53 99.48 0.65 -9.96 16 13 N -0.68 -26.33 6.19 -499.45 -3.09 -29.42 16 14 C 0.11 3.36 5.32 85.56 0.46 3.81 16 15 C -0.14 -3.80 5.47 -19.66 -0.11 -3.90 16 16 C -0.02 -0.45 9.81 22.44 0.22 -0.23 16 17 C -0.17 -3.38 9.83 22.39 0.22 -3.16 16 18 C 0.14 3.31 7.16 84.66 0.61 3.91 16 19 Br 0.00 0.07 33.86 -20.37 -0.69 -0.62 16 20 N -0.53 -14.69 9.18 -303.83 -2.79 -17.48 16 21 C 0.32 9.25 7.47 84.77 0.63 9.88 16 22 O -0.31 -8.71 9.69 -90.00 -0.87 -9.58 16 23 C 0.04 0.78 10.38 113.37 1.18 1.95 16 24 H 0.04 1.99 6.85 -2.39 -0.02 1.97 16 25 H 0.05 1.96 6.63 -2.39 -0.02 1.94 16 26 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 27 H 0.06 2.18 7.50 -2.39 -0.02 2.16 16 28 H 0.04 1.61 3.42 -2.39 -0.01 1.60 16 29 H 0.26 15.36 8.31 -92.71 -0.77 14.59 16 30 H 0.34 13.08 6.65 -89.70 -0.60 12.49 16 31 H 0.04 1.25 7.27 -2.39 -0.02 1.23 16 32 H 0.09 2.54 7.81 -2.39 -0.02 2.52 16 33 H 0.17 3.12 8.06 -2.91 -0.02 3.10 16 34 H 0.18 2.46 8.06 -2.91 -0.02 2.43 16 35 H 0.06 1.20 8.10 -2.39 -0.02 1.18 16 36 H 0.05 1.19 8.11 -2.39 -0.02 1.17 16 37 H 0.12 1.88 8.14 -2.39 -0.02 1.86 16 Total: -1.00 -66.11 320.88 -0.27 -66.38 By element: Atomic # 1 Polarization: 18.21 SS G_CDS: 0.42 Total: 18.63 kcal Atomic # 6 Polarization: -19.72 SS G_CDS: 4.79 Total: -14.94 kcal Atomic # 7 Polarization: -100.01 SS G_CDS: -5.58 Total: -105.59 kcal Atomic # 8 Polarization: -8.71 SS G_CDS: -0.87 Total: -9.58 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 1.67 Total: 45.73 kcal Atomic # 35 Polarization: 0.07 SS G_CDS: -0.69 Total: -0.62 kcal Total: -66.11 -0.27 -66.38 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255160239.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.906 kcal (2) G-P(sol) polarization free energy of solvation -66.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds