Wall clock time and date at job start Tue Mar 31 2020 15:16:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.47209 * 2 1 4 4 H 1.09006 * 109.46854 * 304.29304 * 3 2 1 5 5 C 1.50696 * 109.47245 * 184.29102 * 3 2 1 6 6 H 1.08001 * 119.99533 * 239.99982 * 5 3 2 7 7 C 1.37875 * 120.00027 * 59.72396 * 5 3 2 8 8 N 1.31511 * 120.00045 * 0.27403 * 7 5 3 9 9 Si 1.86798 * 119.99990 * 180.27971 * 7 5 3 10 10 H 1.48502 * 109.47570 * 59.99483 * 9 7 5 11 11 H 1.48496 * 109.47352 * 179.97438 * 9 7 5 12 12 H 1.48507 * 109.47044 * 299.99560 * 9 7 5 13 13 N 1.46902 * 109.46960 * 64.28580 * 3 2 1 14 14 C 1.46898 * 111.00005 * 205.79446 * 13 3 2 15 15 C 1.50698 * 109.47485 * 174.81606 * 14 13 3 16 16 C 1.38453 * 120.43394 * 259.72765 * 15 14 13 17 17 C 1.38733 * 118.49637 * 179.75195 * 16 15 14 18 18 C 1.38224 * 119.28052 * 0.49691 * 17 16 15 19 19 Br 1.89094 * 119.59914 * 179.74470 * 18 17 16 20 20 N 1.32004 * 120.80543 * 359.76686 * 18 17 16 21 21 C 1.32287 * 121.63860 * 359.97438 * 20 18 17 22 22 O 1.35680 * 119.68094 * 180.02562 * 21 20 18 23 23 C 1.42894 * 116.99996 * 359.97438 * 22 21 20 24 24 H 1.09005 * 109.47042 * 54.21660 * 1 2 3 25 25 H 1.08997 * 109.47353 * 174.21402 * 1 2 3 26 26 H 1.08995 * 109.47329 * 294.21806 * 1 2 3 27 27 H 1.08994 * 109.47045 * 239.99634 * 2 1 3 28 28 H 1.08997 * 109.46675 * 120.00021 * 2 1 3 29 29 H 0.96996 * 120.00152 * 180.02562 * 8 7 5 30 30 H 1.00900 * 110.99435 * 81.84809 * 13 3 2 31 31 H 1.09005 * 109.47244 * 294.81855 * 14 13 3 32 32 H 1.09001 * 109.46949 * 54.81836 * 14 13 3 33 33 H 1.07996 * 120.75002 * 0.02562 * 16 15 14 34 34 H 1.07997 * 120.36163 * 180.21955 * 17 16 15 35 35 H 1.08996 * 109.47428 * 300.00393 * 23 22 21 36 36 H 1.09004 * 109.46689 * 60.00201 * 23 22 21 37 37 H 1.08998 * 109.47128 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6152 1.9780 -0.8491 5 6 3.5433 1.4438 -0.1063 6 1 4.1394 1.8916 0.6750 7 6 4.1577 0.8684 -1.1982 8 7 3.4317 0.3231 -2.1496 9 14 6.0213 0.8631 -1.3262 10 1 6.5951 0.1346 -0.1663 11 1 6.4291 0.1887 -2.5847 12 1 6.5212 2.2615 -1.3290 13 7 1.6367 2.1044 1.2479 14 6 1.5417 3.5589 1.0653 15 6 1.0048 4.1893 2.3245 16 6 -0.3283 4.5523 2.4137 17 6 -0.7809 5.1247 3.5936 18 6 0.1083 5.3236 4.6331 19 35 -0.4973 6.1098 6.2427 20 7 1.3752 4.9718 4.5156 21 6 1.8420 4.4188 3.4083 22 8 3.1515 4.0721 3.3309 23 6 3.9609 4.3340 4.4790 24 1 -0.3633 0.6009 -0.8337 25 1 -0.3634 -1.0224 -0.1036 26 1 -0.3634 0.4215 0.9372 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 3.8639 -0.0821 -2.9176 30 1 2.2694 1.8750 1.9996 31 1 2.5307 3.9635 0.8496 32 1 0.8705 3.7778 0.2348 33 1 -1.0016 4.3893 1.5852 34 1 -1.8156 5.4159 3.6973 35 1 3.9530 5.4028 4.6929 36 1 3.5637 3.7891 5.3354 37 1 4.9831 4.0095 4.2846 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255160240.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:16:15 Heat of formation + Delta-G solvation = -6.739649 kcal Electronic energy + Delta-G solvation = -20201.820539 eV Core-core repulsion = 17025.574363 eV Total energy + Delta-G solvation = -3176.246176 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 328.053 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.70875 -37.84455 -36.32798 -33.76898 -31.98399 -31.81428 -31.04095 -29.50866 -27.28283 -26.47421 -24.51649 -23.09473 -22.61231 -21.42394 -19.49235 -18.24662 -17.09415 -16.63605 -16.00933 -15.60182 -14.82177 -14.38770 -14.24954 -14.10348 -13.68069 -13.59476 -13.15476 -12.75526 -12.41397 -11.98266 -11.81440 -11.54409 -11.45138 -11.20051 -11.08726 -10.92245 -10.65947 -10.59452 -10.56686 -10.19424 -9.82761 -9.73768 -9.59678 -9.46317 -9.07361 -8.37759 -8.32915 -7.28305 -5.99571 -4.11834 0.90884 1.22799 1.23529 3.16569 3.28607 3.33755 3.36437 3.60989 4.38334 4.40384 4.86483 4.91103 5.09558 5.25642 5.31374 5.35972 5.38484 5.63386 5.67264 5.77833 5.95097 6.21666 6.37180 6.44763 6.49540 6.54895 6.70184 7.11187 7.16009 7.21849 7.42050 7.57352 7.60730 7.78045 8.07500 8.13608 8.30525 8.62993 8.99933 9.55645 11.00810 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.022116 B = 0.003268 C = 0.002951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.768141 B = 8564.579305 C = 9486.195722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.106 4.106 3 C 0.216 3.784 4 H 0.033 0.967 5 C -0.544 4.544 6 H 0.055 0.945 7 C 0.068 3.932 8 N -0.886 5.886 9 Si 0.888 3.112 10 H -0.277 1.277 11 H -0.287 1.287 12 H -0.278 1.278 13 N -0.682 5.682 14 C 0.111 3.889 15 C -0.112 4.112 16 C -0.029 4.029 17 C -0.174 4.174 18 C 0.149 3.851 19 Br -0.019 7.019 20 N -0.522 5.522 21 C 0.334 3.666 22 O -0.290 6.290 23 C 0.040 3.960 24 H 0.037 0.963 25 H 0.024 0.976 26 H 0.045 0.955 27 H 0.091 0.909 28 H 0.030 0.970 29 H 0.261 0.739 30 H 0.332 0.668 31 H 0.048 0.952 32 H 0.074 0.926 33 H 0.151 0.849 34 H 0.144 0.856 35 H 0.056 0.944 36 H 0.058 0.942 37 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.302 11.410 14.068 19.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.144 4.144 3 C 0.108 3.892 4 H 0.051 0.949 5 C -0.584 4.584 6 H 0.073 0.927 7 C -0.134 4.134 8 N -0.524 5.524 9 Si 0.716 3.284 10 H -0.203 1.203 11 H -0.213 1.213 12 H -0.204 1.204 13 N -0.311 5.311 14 C -0.019 4.019 15 C -0.115 4.115 16 C -0.055 4.055 17 C -0.197 4.197 18 C -0.066 4.066 19 Br 0.065 6.935 20 N -0.247 5.247 21 C 0.153 3.847 22 O -0.196 6.196 23 C -0.055 4.055 24 H 0.056 0.944 25 H 0.043 0.957 26 H 0.064 0.936 27 H 0.109 0.891 28 H 0.049 0.951 29 H 0.071 0.929 30 H 0.148 0.852 31 H 0.066 0.934 32 H 0.092 0.908 33 H 0.169 0.831 34 H 0.161 0.839 35 H 0.074 0.926 36 H 0.077 0.923 37 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -8.433 11.505 14.849 20.591 hybrid contribution 1.743 -0.009 -0.816 1.925 sum -6.690 11.496 14.033 19.335 Atomic orbital electron populations 1.21687 0.99015 0.98295 1.00287 1.21498 0.92053 0.99161 1.01730 1.19169 0.92865 0.91133 0.86005 0.94942 1.21847 0.92655 1.37872 1.05979 0.92670 1.24915 0.97902 0.94984 0.95648 1.69859 1.34951 1.37970 1.09662 0.86722 0.86158 0.78172 0.77311 1.20312 1.21295 1.20391 1.61018 1.55550 1.04379 1.10170 1.20596 0.99558 0.90723 0.91021 1.20387 0.93084 1.01227 0.96838 1.21398 0.94071 0.92939 0.97141 1.21775 1.00796 1.03796 0.93304 1.22188 0.90738 1.00452 0.93192 1.96738 1.86568 1.80395 1.29832 1.66916 1.15822 1.16485 1.25526 1.19661 0.85375 0.90914 0.88775 1.86392 1.15684 1.77453 1.40074 1.22871 0.93970 1.01418 0.87272 0.94426 0.95694 0.93569 0.89075 0.95126 0.92851 0.85214 0.93375 0.90783 0.83086 0.83853 0.92561 0.92342 0.88447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.72 9.72 37.16 0.36 -2.36 16 2 C -0.11 -2.49 5.44 -26.73 -0.15 -2.64 16 3 C 0.22 5.18 1.99 -68.86 -0.14 5.05 16 4 H 0.03 0.85 7.70 -51.93 -0.40 0.45 16 5 C -0.54 -14.40 8.47 -34.44 -0.29 -14.69 16 6 H 0.06 1.47 7.73 -52.49 -0.41 1.06 16 7 C 0.07 1.83 5.29 -17.82 -0.09 1.74 16 8 N -0.89 -24.62 11.29 55.43 0.63 -23.99 16 9 Si 0.89 20.95 29.54 -169.99 -5.02 15.93 16 10 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 11 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 12 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 13 N -0.68 -13.95 5.74 -109.22 -0.63 -14.58 16 14 C 0.11 2.01 5.32 -4.98 -0.03 1.98 16 15 C -0.11 -1.75 5.47 -104.31 -0.57 -2.32 16 16 C -0.03 -0.37 9.81 -39.32 -0.39 -0.76 16 17 C -0.17 -2.06 9.83 -39.40 -0.39 -2.45 16 18 C 0.15 2.01 7.16 -17.48 -0.13 1.88 16 19 Br -0.02 -0.21 33.86 -68.01 -2.30 -2.52 16 20 N -0.52 -7.94 9.18 -11.72 -0.11 -8.05 16 21 C 0.33 5.39 7.47 -17.13 -0.13 5.27 16 22 O -0.29 -4.77 9.71 -18.74 -0.18 -4.95 16 23 C 0.04 0.51 10.38 101.05 1.05 1.56 16 24 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 25 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.05 0.89 7.90 -51.93 -0.41 0.48 16 27 H 0.09 2.39 5.95 -51.93 -0.31 2.09 16 28 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 29 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 30 H 0.33 7.05 8.43 -39.29 -0.33 6.72 16 31 H 0.05 0.96 7.84 -51.93 -0.41 0.55 16 32 H 0.07 1.28 7.81 -51.93 -0.41 0.88 16 33 H 0.15 1.60 8.06 -52.49 -0.42 1.18 16 34 H 0.14 1.29 8.06 -52.49 -0.42 0.87 16 35 H 0.06 0.67 8.10 -51.93 -0.42 0.25 16 36 H 0.06 0.72 8.10 -51.93 -0.42 0.30 16 37 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 333.55 15.07 5.03 5.03 Total: -1.00 -28.07 333.55 -8.65 -36.72 By element: Atomic # 1 Polarization: 9.34 SS G_CDS: -5.18 Total: 4.16 kcal Atomic # 6 Polarization: -6.86 SS G_CDS: -0.88 Total: -7.74 kcal Atomic # 7 Polarization: -46.51 SS G_CDS: -0.11 Total: -46.62 kcal Atomic # 8 Polarization: -4.77 SS G_CDS: -0.18 Total: -4.95 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Atomic # 35 Polarization: -0.21 SS G_CDS: -2.30 Total: -2.52 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -28.07 -8.65 -36.72 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255160240.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.983 kcal (2) G-P(sol) polarization free energy of solvation -28.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds