Wall clock time and date at job start Tue Mar 31 2020 15:16:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.47209 * 2 1 4 4 H 1.09006 * 109.46854 * 304.29304 * 3 2 1 5 5 C 1.50696 * 109.47245 * 184.29102 * 3 2 1 6 6 H 1.08001 * 119.99533 * 239.99982 * 5 3 2 7 7 C 1.37875 * 120.00027 * 59.72396 * 5 3 2 8 8 N 1.31511 * 120.00045 * 0.27403 * 7 5 3 9 9 Si 1.86798 * 119.99990 * 180.27971 * 7 5 3 10 10 H 1.48502 * 109.47570 * 59.99483 * 9 7 5 11 11 H 1.48496 * 109.47352 * 179.97438 * 9 7 5 12 12 H 1.48507 * 109.47044 * 299.99560 * 9 7 5 13 13 N 1.46902 * 109.46960 * 64.28580 * 3 2 1 14 14 C 1.46898 * 111.00005 * 205.79446 * 13 3 2 15 15 C 1.50698 * 109.47485 * 174.81606 * 14 13 3 16 16 C 1.38453 * 120.43394 * 259.72765 * 15 14 13 17 17 C 1.38733 * 118.49637 * 179.75195 * 16 15 14 18 18 C 1.38224 * 119.28052 * 0.49691 * 17 16 15 19 19 Br 1.89094 * 119.59914 * 179.74470 * 18 17 16 20 20 N 1.32004 * 120.80543 * 359.76686 * 18 17 16 21 21 C 1.32287 * 121.63860 * 359.97438 * 20 18 17 22 22 O 1.35680 * 119.68094 * 180.02562 * 21 20 18 23 23 C 1.42894 * 116.99996 * 359.97438 * 22 21 20 24 24 H 1.09005 * 109.47042 * 54.21660 * 1 2 3 25 25 H 1.08997 * 109.47353 * 174.21402 * 1 2 3 26 26 H 1.08995 * 109.47329 * 294.21806 * 1 2 3 27 27 H 1.08994 * 109.47045 * 239.99634 * 2 1 3 28 28 H 1.08997 * 109.46675 * 120.00021 * 2 1 3 29 29 H 0.96996 * 120.00152 * 180.02562 * 8 7 5 30 30 H 1.00900 * 110.99435 * 81.84809 * 13 3 2 31 31 H 1.09005 * 109.47244 * 294.81855 * 14 13 3 32 32 H 1.09001 * 109.46949 * 54.81836 * 14 13 3 33 33 H 1.07996 * 120.75002 * 0.02562 * 16 15 14 34 34 H 1.07997 * 120.36163 * 180.21955 * 17 16 15 35 35 H 1.08996 * 109.47428 * 300.00393 * 23 22 21 36 36 H 1.09004 * 109.46689 * 60.00201 * 23 22 21 37 37 H 1.08998 * 109.47128 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6152 1.9780 -0.8491 5 6 3.5433 1.4438 -0.1063 6 1 4.1394 1.8916 0.6750 7 6 4.1577 0.8684 -1.1982 8 7 3.4317 0.3231 -2.1496 9 14 6.0213 0.8631 -1.3262 10 1 6.5951 0.1346 -0.1663 11 1 6.4291 0.1887 -2.5847 12 1 6.5212 2.2615 -1.3290 13 7 1.6367 2.1044 1.2479 14 6 1.5417 3.5589 1.0653 15 6 1.0048 4.1893 2.3245 16 6 -0.3283 4.5523 2.4137 17 6 -0.7809 5.1247 3.5936 18 6 0.1083 5.3236 4.6331 19 35 -0.4973 6.1098 6.2427 20 7 1.3752 4.9718 4.5156 21 6 1.8420 4.4188 3.4083 22 8 3.1515 4.0721 3.3309 23 6 3.9609 4.3340 4.4790 24 1 -0.3633 0.6009 -0.8337 25 1 -0.3634 -1.0224 -0.1036 26 1 -0.3634 0.4215 0.9372 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 3.8639 -0.0821 -2.9176 30 1 2.2694 1.8750 1.9996 31 1 2.5307 3.9635 0.8496 32 1 0.8705 3.7778 0.2348 33 1 -1.0016 4.3893 1.5852 34 1 -1.8156 5.4159 3.6973 35 1 3.9530 5.4028 4.6929 36 1 3.5637 3.7891 5.3354 37 1 4.9831 4.0095 4.2846 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255160240.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:16:15 Heat of formation + Delta-G solvation = -25.118344 kcal Electronic energy + Delta-G solvation = -20202.617499 eV Core-core repulsion = 17025.574363 eV Total energy + Delta-G solvation = -3177.043136 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 328.053 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.81489 -38.95480 -38.05259 -35.25616 -33.72396 -32.87076 -32.51291 -30.75642 -28.58243 -28.01169 -26.04664 -24.37666 -24.11465 -22.71483 -21.35959 -19.35028 -18.72009 -18.11636 -17.17208 -16.81131 -16.64843 -15.83904 -15.52045 -15.35071 -15.22898 -14.81703 -14.56357 -14.21419 -13.85275 -13.56828 -13.15135 -13.04987 -12.93217 -12.75489 -12.56963 -12.55888 -12.46046 -12.07915 -11.61888 -11.50685 -11.48378 -11.40733 -10.99892 -10.81958 -10.76675 -10.43249 -9.46567 -9.02850 -8.03283 -6.23911 -0.18099 0.18614 0.23419 1.39974 1.40797 1.48036 2.10416 2.42009 2.51215 3.16928 3.32520 3.69993 3.80385 3.99469 4.12825 4.30871 4.38128 4.38680 4.56871 4.67462 4.70163 4.79644 4.81101 4.93912 4.97338 5.19090 5.24660 5.30987 5.46105 5.55184 5.65897 5.79370 6.12299 6.13573 6.21547 6.38718 6.52459 6.78413 7.01179 7.46784 8.93275 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.022116 B = 0.003268 C = 0.002951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.768141 B = 8564.579305 C = 9486.195722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.102 4.102 3 C 0.223 3.777 4 H 0.007 0.993 5 C -0.558 4.558 6 H 0.047 0.953 7 C 0.023 3.977 8 N -0.909 5.909 9 Si 0.946 3.054 10 H -0.274 1.274 11 H -0.283 1.283 12 H -0.276 1.276 13 N -0.670 5.670 14 C 0.120 3.880 15 C -0.133 4.133 16 C -0.019 4.019 17 C -0.162 4.162 18 C 0.136 3.864 19 Br 0.004 6.996 20 N -0.534 5.534 21 C 0.319 3.681 22 O -0.316 6.316 23 C 0.038 3.962 24 H 0.035 0.965 25 H 0.041 0.959 26 H 0.056 0.944 27 H 0.062 0.938 28 H 0.023 0.977 29 H 0.262 0.738 30 H 0.327 0.673 31 H 0.022 0.978 32 H 0.080 0.920 33 H 0.177 0.823 34 H 0.179 0.821 35 H 0.061 0.939 36 H 0.059 0.941 37 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.493 12.122 15.122 21.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.141 4.141 3 C 0.114 3.886 4 H 0.025 0.975 5 C -0.597 4.597 6 H 0.065 0.935 7 C -0.177 4.177 8 N -0.548 5.548 9 Si 0.772 3.228 10 H -0.200 1.200 11 H -0.209 1.209 12 H -0.202 1.202 13 N -0.298 5.298 14 C -0.010 4.010 15 C -0.137 4.137 16 C -0.045 4.045 17 C -0.185 4.185 18 C -0.079 4.079 19 Br 0.088 6.912 20 N -0.259 5.259 21 C 0.138 3.862 22 O -0.223 6.223 23 C -0.056 4.056 24 H 0.054 0.946 25 H 0.060 0.940 26 H 0.075 0.925 27 H 0.080 0.920 28 H 0.042 0.958 29 H 0.071 0.929 30 H 0.142 0.858 31 H 0.040 0.960 32 H 0.098 0.902 33 H 0.194 0.806 34 H 0.196 0.804 35 H 0.079 0.921 36 H 0.077 0.923 37 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -9.629 12.229 15.922 22.266 hybrid contribution 2.049 -0.151 -1.050 2.307 sum -7.580 12.078 14.872 20.604 Atomic orbital electron populations 1.21537 0.96144 0.99530 1.00777 1.21357 0.94597 0.98267 0.99871 1.18956 0.91486 0.91533 0.86606 0.97477 1.22130 0.94152 1.37606 1.05798 0.93499 1.25587 1.01779 0.94833 0.95487 1.69978 1.36331 1.38517 1.09992 0.85813 0.81546 0.78118 0.77338 1.19953 1.20854 1.20164 1.60955 1.54586 1.05987 1.08276 1.20459 0.98544 0.89077 0.92904 1.20219 0.94495 1.03134 0.95805 1.21715 0.93036 0.91478 0.98265 1.22137 1.02094 1.02173 0.92062 1.22724 0.90519 1.00020 0.94595 1.96760 1.86020 1.79897 1.28545 1.66952 1.16881 1.16862 1.25227 1.19776 0.85393 0.91679 0.89336 1.86354 1.16373 1.77912 1.41660 1.23021 0.94281 1.01832 0.86485 0.94552 0.93954 0.92467 0.91970 0.95826 0.92902 0.85770 0.96024 0.90187 0.80578 0.80391 0.92062 0.92260 0.86933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.78 9.72 71.98 0.70 -4.08 16 2 C -0.10 -4.85 5.44 30.60 0.17 -4.68 16 3 C 0.22 10.90 1.99 44.17 0.09 10.99 16 4 H 0.01 0.39 7.70 -2.38 -0.02 0.37 16 5 C -0.56 -30.13 8.47 25.60 0.22 -29.91 16 6 H 0.05 2.55 7.73 -2.91 -0.02 2.53 16 7 C 0.02 1.27 5.29 84.65 0.45 1.72 16 8 N -0.91 -51.33 11.29 21.45 0.24 -51.09 16 9 Si 0.95 43.39 29.54 68.60 2.03 45.42 16 10 H -0.27 -12.35 7.11 99.48 0.71 -11.65 16 11 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 12 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 13 N -0.67 -27.64 5.74 -499.45 -2.87 -30.51 16 14 C 0.12 4.39 5.32 85.56 0.46 4.85 16 15 C -0.13 -4.08 5.47 -19.66 -0.11 -4.18 16 16 C -0.02 -0.43 9.81 22.44 0.22 -0.21 16 17 C -0.16 -3.35 9.83 22.39 0.22 -3.13 16 18 C 0.14 3.37 7.16 84.66 0.61 3.98 16 19 Br 0.00 0.08 33.86 -20.37 -0.69 -0.61 16 20 N -0.53 -15.68 9.18 -303.84 -2.79 -18.47 16 21 C 0.32 10.22 7.47 84.77 0.63 10.86 16 22 O -0.32 -10.57 9.71 -89.98 -0.87 -11.45 16 23 C 0.04 0.98 10.38 113.37 1.18 2.15 16 24 H 0.04 1.40 8.14 -2.38 -0.02 1.38 16 25 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 26 H 0.06 2.09 7.90 -2.39 -0.02 2.07 16 27 H 0.06 3.33 5.95 -2.39 -0.01 3.31 16 28 H 0.02 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.26 14.15 8.31 -92.71 -0.77 13.38 16 30 H 0.33 14.13 8.43 -89.69 -0.76 13.38 16 31 H 0.02 0.90 7.84 -2.38 -0.02 0.88 16 32 H 0.08 2.77 7.81 -2.39 -0.02 2.75 16 33 H 0.18 3.15 8.06 -2.91 -0.02 3.12 16 34 H 0.18 2.40 8.06 -2.91 -0.02 2.38 16 35 H 0.06 1.45 8.10 -2.39 -0.02 1.43 16 36 H 0.06 1.46 8.10 -2.39 -0.02 1.44 16 37 H 0.11 2.41 8.14 -2.39 -0.02 2.39 16 Total: -1.00 -60.64 333.55 0.19 -60.45 By element: Atomic # 1 Polarization: 17.61 SS G_CDS: 0.32 Total: 17.93 kcal Atomic # 6 Polarization: -16.49 SS G_CDS: 4.82 Total: -11.67 kcal Atomic # 7 Polarization: -94.65 SS G_CDS: -5.41 Total: -100.06 kcal Atomic # 8 Polarization: -10.57 SS G_CDS: -0.87 Total: -11.45 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.42 kcal Atomic # 35 Polarization: 0.08 SS G_CDS: -0.69 Total: -0.61 kcal Total: -60.64 0.19 -60.45 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255160240.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.332 kcal (2) G-P(sol) polarization free energy of solvation -60.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds