Wall clock time and date at job start Tue Mar 31 2020 15:02:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48495 * 109.47329 * 239.99803 * 3 2 1 5 5 H 1.48502 * 109.47220 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46903 * 120.00081 * 3 2 1 7 7 C 1.37877 * 119.99496 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99742 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00427 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47512 * 180.02562 * 9 7 2 11 11 S 1.81393 * 109.47305 * 179.97438 * 10 9 7 12 12 O 1.42102 * 108.57756 * 65.51419 * 11 10 9 13 13 O 1.42096 * 108.58127 * 294.48608 * 11 10 9 14 14 C 1.81402 * 101.92212 * 179.97438 * 11 10 9 15 15 C 1.50697 * 109.47354 * 180.02562 * 14 11 10 16 16 N 1.31140 * 126.55016 * 90.24701 * 15 14 11 17 17 C 1.34491 * 105.61108 * 180.12463 * 16 15 14 18 18 C 1.50706 * 126.28691 * 179.90795 * 17 16 15 19 19 C 1.52999 * 109.47090 * 269.71880 * 18 17 16 20 20 F 1.39899 * 109.47525 * 59.99438 * 19 18 17 21 21 F 1.39895 * 109.47108 * 179.97438 * 19 18 17 22 22 F 1.39908 * 109.46797 * 299.99492 * 19 18 17 23 23 N 1.29946 * 107.42990 * 359.64601 * 17 16 15 24 24 O 1.21300 * 110.24653 * 0.22675 * 23 17 16 25 25 H 0.97001 * 119.99659 * 359.97438 * 1 2 3 26 26 H 1.08994 * 109.46894 * 59.99913 * 9 7 2 27 27 H 1.08999 * 109.46778 * 300.00090 * 9 7 2 28 28 H 1.09006 * 109.47273 * 59.99570 * 10 9 7 29 29 H 1.08997 * 109.46913 * 300.00306 * 10 9 7 30 30 H 1.08996 * 109.47021 * 60.00221 * 14 11 10 31 31 H 1.09001 * 109.47323 * 300.00451 * 14 11 10 32 32 H 1.08994 * 109.46790 * 29.71277 * 18 17 16 33 33 H 1.08997 * 109.47305 * 149.71718 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2124 5 1 1.2843 2.7465 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0017 10 6 2.2450 -3.6622 -0.0015 11 16 1.3380 -5.2330 -0.0021 12 8 0.6287 -5.3457 -1.2283 13 8 0.6276 -5.3462 1.2233 14 6 2.6876 -6.4451 -0.0025 15 6 2.1121 -7.8378 -0.0037 16 7 1.8184 -8.5606 -1.0578 17 6 1.3341 -9.7200 -0.5782 18 6 0.8508 -10.8906 -1.3950 19 6 -0.6461 -10.7364 -1.6714 20 9 -0.8700 -9.5502 -2.3785 21 9 -1.0946 -11.8228 -2.4302 22 9 -1.3424 -10.6948 -0.4586 23 7 1.3645 -9.6476 0.7189 24 8 1.8081 -8.5743 1.0692 25 1 -0.4850 0.8401 0.0004 26 1 0.6246 -2.5563 -0.8919 27 1 0.6239 -2.5575 0.8880 28 1 2.8711 -3.6049 0.8890 29 1 2.8724 -3.6040 -0.8909 30 1 3.3012 -6.3059 0.8876 31 1 3.3014 -6.3052 -0.8923 32 1 1.3932 -10.9230 -2.3398 33 1 1.0252 -11.8148 -0.8440 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320814192.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:02:19 Heat of formation + Delta-G solvation = -186.355183 kcal Electronic energy + Delta-G solvation = -25588.963611 eV Core-core repulsion = 20943.710279 eV Total energy + Delta-G solvation = -4645.253333 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.054 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -51.28794 -48.80150 -48.77369 -47.07018 -38.11593 -37.67319 -37.14576 -35.84256 -35.53506 -33.10340 -32.48957 -30.57813 -27.56916 -26.06370 -24.85590 -23.65887 -22.79500 -20.17617 -19.91471 -19.72510 -19.56711 -19.02443 -18.78476 -18.29771 -17.50219 -17.26612 -17.12874 -16.48051 -16.03327 -15.85093 -15.63447 -15.33737 -15.19196 -15.10860 -14.92058 -14.90337 -14.47452 -14.38279 -14.10740 -13.79859 -13.69835 -13.49249 -13.18928 -13.12443 -13.10096 -12.84196 -12.73454 -12.51626 -12.39062 -12.13987 -12.09979 -11.69430 -11.30659 -10.89427 -10.58713 -8.21033 -6.35001 -1.34615 -0.24216 0.61919 1.18402 1.45820 1.48908 1.56734 1.63622 1.74538 1.95389 2.37989 2.42710 2.62246 2.70856 2.86855 3.00870 3.05116 3.13473 3.39731 3.81940 3.90667 4.07571 4.08500 4.24367 4.25736 4.42774 4.46822 4.86936 5.36110 5.37331 5.74389 6.09779 6.63586 6.80874 7.35596 8.91080 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.027954 B = 0.002686 C = 0.002572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.418107 B =10423.672972 C =10885.042411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.007 4.007 3 Si 0.973 3.027 4 H -0.261 1.261 5 H -0.291 1.291 6 H -0.261 1.261 7 C -0.535 4.535 8 H 0.086 0.914 9 C 0.015 3.985 10 C -0.554 4.554 11 S 2.392 3.608 12 O -0.970 6.970 13 O -0.973 6.973 14 C -0.512 4.512 15 C 0.185 3.815 16 N -0.463 5.463 17 C 0.148 3.852 18 C -0.066 4.066 19 C 0.454 3.546 20 F -0.190 7.190 21 F -0.168 7.168 22 F -0.192 7.192 23 N -0.367 5.367 24 O 0.097 5.903 25 H 0.265 0.735 26 H 0.004 0.996 27 H 0.005 0.995 28 H 0.166 0.834 29 H 0.163 0.837 30 H 0.225 0.775 31 H 0.220 0.780 32 H 0.176 0.824 33 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.218 -22.665 -2.115 24.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.205 4.205 3 Si 0.797 3.203 4 H -0.186 1.186 5 H -0.217 1.217 6 H -0.185 1.185 7 C -0.575 4.575 8 H 0.104 0.896 9 C -0.024 4.024 10 C -0.687 4.687 11 S 2.578 3.422 12 O -0.967 6.967 13 O -0.970 6.970 14 C -0.639 4.639 15 C -0.036 4.036 16 N -0.198 5.198 17 C -0.125 4.125 18 C -0.105 4.105 19 C 0.398 3.602 20 F -0.171 7.171 21 F -0.149 7.149 22 F -0.173 7.173 23 N -0.071 5.071 24 O 0.033 5.967 25 H 0.074 0.926 26 H 0.022 0.978 27 H 0.023 0.977 28 H 0.184 0.816 29 H 0.181 0.819 30 H 0.242 0.758 31 H 0.237 0.763 32 H 0.194 0.806 33 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 8.796 -23.555 -2.044 25.226 hybrid contribution 0.143 1.265 0.051 1.274 sum 8.939 -22.289 -1.994 24.098 Atomic orbital electron populations 1.70121 1.08261 1.28242 1.51152 1.26146 0.95763 1.04016 0.94612 0.85373 0.78055 0.77285 0.79588 1.18591 1.21683 1.18528 1.21568 0.94380 0.90410 1.51092 0.89563 1.18872 0.93928 0.93099 0.96453 1.30002 1.12005 1.12280 1.14441 1.08863 0.79157 0.79986 0.74173 1.93554 1.70233 1.86347 1.46589 1.93543 1.70237 1.86512 1.46688 1.29331 1.19265 0.95195 1.20132 1.27701 0.97162 0.97849 0.80840 1.71986 1.16289 1.02820 1.28662 1.25582 1.01953 0.96448 0.88484 1.21405 0.88517 0.95436 1.05106 1.20528 0.91616 0.73919 0.74107 1.93262 1.95945 1.48578 1.79326 1.93229 1.91007 1.54404 1.76285 1.93223 1.82357 1.96166 1.45577 1.74684 1.15630 1.01065 1.15684 1.85358 1.56945 1.18969 1.35427 0.92610 0.97799 0.97676 0.81628 0.81880 0.75817 0.76294 0.80626 0.80827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.44 13.29 21.45 0.28 -56.15 16 2 C -0.01 -0.40 5.46 84.65 0.46 0.06 16 3 Si 0.97 41.69 29.54 68.60 2.03 43.72 16 4 H -0.26 -10.53 7.11 99.48 0.71 -9.82 16 5 H -0.29 -12.60 7.11 99.48 0.71 -11.89 16 6 H -0.26 -10.48 7.11 99.48 0.71 -9.77 16 7 C -0.54 -27.78 9.11 25.60 0.23 -27.55 16 8 H 0.09 3.94 7.74 -2.91 -0.02 3.92 16 9 C 0.02 0.74 4.98 29.85 0.15 0.89 16 10 C -0.55 -16.66 5.74 71.98 0.41 -16.25 16 11 S 2.39 72.50 4.70 -56.49 -0.27 72.24 16 12 O -0.97 -38.49 18.10 -127.37 -2.30 -40.80 16 13 O -0.97 -37.52 18.10 -127.37 -2.31 -39.82 16 14 C -0.51 -7.67 6.43 71.23 0.46 -7.21 16 15 C 0.19 4.27 7.77 88.38 0.69 4.96 16 16 N -0.46 -11.60 11.55 -303.21 -3.50 -15.10 16 17 C 0.15 3.33 6.94 138.47 0.96 4.30 16 18 C -0.07 -0.89 5.89 29.85 0.18 -0.71 16 19 C 0.45 8.98 3.15 71.98 0.23 9.20 16 20 F -0.19 -5.03 17.02 44.97 0.77 -4.27 16 21 F -0.17 -2.87 17.32 44.97 0.78 -2.09 16 22 F -0.19 -4.67 17.03 44.97 0.77 -3.91 16 23 N -0.37 -9.18 12.16 -60.33 -0.73 -9.92 16 24 O 0.10 2.40 11.31 74.87 0.85 3.24 16 25 H 0.27 15.06 8.31 -92.71 -0.77 14.29 16 26 H 0.00 0.20 8.14 -2.39 -0.02 0.18 16 27 H 0.00 0.27 8.14 -2.39 -0.02 0.25 16 28 H 0.17 3.66 8.14 -2.39 -0.02 3.64 16 29 H 0.16 3.70 8.14 -2.39 -0.02 3.68 16 30 H 0.22 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.22 1.47 8.14 -2.39 -0.02 1.45 16 32 H 0.18 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.17 1.10 8.14 -2.39 -0.02 1.09 16 Total: -1.00 -87.29 328.09 1.29 -85.99 By element: Atomic # 1 Polarization: -2.00 SS G_CDS: 1.17 Total: -0.82 kcal Atomic # 6 Polarization: -36.08 SS G_CDS: 3.77 Total: -32.31 kcal Atomic # 7 Polarization: -77.22 SS G_CDS: -3.95 Total: -81.17 kcal Atomic # 8 Polarization: -73.61 SS G_CDS: -3.76 Total: -77.38 kcal Atomic # 9 Polarization: -12.58 SS G_CDS: 2.31 Total: -10.27 kcal Atomic # 14 Polarization: 41.69 SS G_CDS: 2.03 Total: 43.72 kcal Atomic # 16 Polarization: 72.50 SS G_CDS: -0.27 Total: 72.24 kcal Total: -87.29 1.29 -85.99 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320814192.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.363 kcal (2) G-P(sol) polarization free energy of solvation -87.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -187.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -186.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds