Wall clock time and date at job start Tue Mar 31 2020 15:34:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48501 * 109.47364 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47233 * 300.00179 * 3 2 1 6 6 H 1.48508 * 109.46883 * 59.99983 * 3 2 1 7 7 C 1.37879 * 120.00338 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00409 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99394 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.46925 * 179.97438 * 9 7 2 11 11 S 1.81399 * 109.47162 * 179.97438 * 10 9 7 12 12 O 1.42098 * 108.57930 * 294.48695 * 11 10 9 13 13 O 1.42100 * 108.57478 * 65.51812 * 11 10 9 14 14 C 1.81404 * 101.91985 * 180.02562 * 11 10 9 15 15 C 1.50703 * 109.46895 * 179.97438 * 14 11 10 16 16 N 1.31072 * 126.66250 * 269.69041 * 15 14 11 17 17 N 1.28839 * 107.99072 * 179.89841 * 16 15 14 18 18 N 1.28746 * 109.39577 * 0.37061 * 17 16 15 19 19 N 1.29017 * 108.80825 * 359.77010 * 18 17 16 20 20 C 1.46499 * 126.43767 * 180.02562 * 19 18 17 21 21 C 1.52992 * 109.47441 * 269.98015 * 20 19 18 22 22 F 1.39897 * 109.47412 * 60.00144 * 21 20 19 23 23 F 1.39902 * 109.47387 * 180.02562 * 21 20 19 24 24 F 1.39902 * 109.47353 * 299.99781 * 21 20 19 25 25 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.47318 * 60.00517 * 9 7 2 27 27 H 1.08996 * 109.47240 * 299.99401 * 9 7 2 28 28 H 1.09004 * 109.46930 * 60.00099 * 10 9 7 29 29 H 1.09004 * 109.47059 * 300.00497 * 10 9 7 30 30 H 1.08997 * 109.47476 * 300.00325 * 14 11 10 31 31 H 1.08995 * 109.46830 * 60.00457 * 14 11 10 32 32 H 1.09001 * 109.46862 * 29.98127 * 20 19 18 33 33 H 1.08997 * 109.47013 * 149.97678 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3965 -1.2125 6 1 1.8904 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0017 10 6 2.2453 -3.6621 -0.0027 11 16 1.3382 -5.2331 -0.0034 12 8 0.6288 -5.3467 1.2226 13 8 0.6281 -5.3452 -1.2291 14 6 2.6880 -6.4450 -0.0038 15 6 2.1125 -7.8378 -0.0037 16 7 1.8191 -8.5633 1.0477 17 7 1.3488 -9.6897 0.6353 18 7 1.3418 -9.7045 -0.6520 19 7 1.8054 -8.5804 -1.0834 20 6 1.9665 -8.1862 -2.4851 21 6 3.3560 -8.5988 -2.9745 22 9 3.4975 -9.9860 -2.8612 23 9 3.5101 -8.2218 -4.3130 24 9 4.3315 -7.9654 -2.1970 25 1 -0.4849 0.8400 0.0004 26 1 0.6248 -2.5563 -0.8920 27 1 0.6241 -2.5575 0.8880 28 1 2.8719 -3.6051 0.8873 29 1 2.8720 -3.6035 -0.8927 30 1 3.3018 -6.3051 -0.8936 31 1 3.3015 -6.3058 0.8863 32 1 1.2065 -8.6796 -3.0910 33 1 1.8563 -7.1054 -2.5735 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320893595.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:34:11 Heat of formation + Delta-G solvation = -130.575504 kcal Electronic energy + Delta-G solvation = -26374.615985 eV Core-core repulsion = 21764.074192 eV Total energy + Delta-G solvation = -4610.541793 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.060 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -51.45376 -48.96737 -48.92524 -45.71187 -38.19662 -37.52404 -37.19256 -35.84552 -35.24449 -33.11199 -31.95918 -30.25765 -27.57064 -26.07445 -24.90646 -23.85357 -23.08297 -20.29958 -20.06245 -19.87695 -19.79949 -18.98435 -18.52222 -17.69071 -17.51526 -17.26992 -17.14081 -16.47852 -16.10589 -15.99356 -15.71501 -15.43689 -15.32209 -15.12632 -15.03294 -15.02549 -14.43925 -14.25527 -14.12521 -13.93183 -13.69585 -13.55994 -13.23456 -13.17351 -12.91618 -12.85795 -12.72057 -12.65173 -12.40148 -12.18444 -12.05625 -11.71994 -11.36118 -10.92518 -10.60673 -8.21570 -6.34751 -1.39044 -0.33616 0.23272 0.75192 1.25218 1.45792 1.46851 1.59060 1.60541 2.04853 2.26939 2.42063 2.43973 2.72369 2.73379 2.87578 2.99584 3.13636 3.34776 3.71585 3.77409 3.82992 4.05084 4.14133 4.16126 4.20733 4.56511 4.84960 5.35718 5.37045 5.74647 6.09982 6.81259 7.05080 7.36007 8.90690 Molecular weight = 328.06amu Principal moments of inertia in cm(-1) A = 0.019116 B = 0.003430 C = 0.003093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1464.414278 B = 8160.767972 C = 9050.627005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.004 4.004 3 Si 0.969 3.031 4 H -0.251 1.251 5 H -0.281 1.281 6 H -0.284 1.284 7 C -0.533 4.533 8 H 0.084 0.916 9 C 0.016 3.984 10 C -0.558 4.558 11 S 2.398 3.602 12 O -0.968 6.968 13 O -0.959 6.959 14 C -0.538 4.538 15 C 0.200 3.800 16 N -0.298 5.298 17 N -0.084 5.084 18 N -0.070 5.070 19 N -0.305 5.305 20 C 0.046 3.954 21 C 0.453 3.547 22 F -0.178 7.178 23 F -0.154 7.154 24 F -0.176 7.176 25 H 0.265 0.735 26 H 0.012 0.988 27 H 0.003 0.997 28 H 0.158 0.842 29 H 0.167 0.833 30 H 0.203 0.797 31 H 0.216 0.784 32 H 0.198 0.802 33 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.024 -15.724 -8.506 21.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.203 4.203 3 Si 0.794 3.206 4 H -0.174 1.174 5 H -0.207 1.207 6 H -0.210 1.210 7 C -0.572 4.572 8 H 0.102 0.898 9 C -0.023 4.023 10 C -0.691 4.691 11 S 2.584 3.416 12 O -0.965 6.965 13 O -0.956 6.956 14 C -0.667 4.667 15 C -0.078 4.078 16 N -0.147 5.147 17 N -0.077 5.077 18 N -0.055 5.055 19 N -0.109 5.109 20 C -0.076 4.076 21 C 0.398 3.602 22 F -0.159 7.159 23 F -0.135 7.135 24 F -0.157 7.157 25 H 0.074 0.926 26 H 0.030 0.970 27 H 0.022 0.978 28 H 0.176 0.824 29 H 0.185 0.815 30 H 0.220 0.780 31 H 0.233 0.767 32 H 0.215 0.785 33 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges 9.508 -17.059 -7.847 21.047 hybrid contribution 1.065 1.508 -0.477 1.906 sum 10.572 -15.551 -8.324 20.565 Atomic orbital electron populations 1.70112 1.08135 1.28093 1.51249 1.26077 0.95725 1.03796 0.94652 0.85327 0.79501 0.78351 0.77447 1.17426 1.20727 1.21019 1.21607 0.94326 0.90433 1.50882 0.89754 1.18884 0.93841 0.92849 0.96704 1.30045 1.12184 1.12507 1.14396 1.08790 0.78713 0.79555 0.74574 1.93563 1.70006 1.86143 1.46755 1.93502 1.69660 1.86448 1.46010 1.29450 1.20026 0.97837 1.19368 1.25110 1.01636 0.98171 0.82930 1.75139 1.15028 0.99956 1.24528 1.78700 1.14739 1.13359 1.00930 1.78940 1.14695 1.03874 1.08002 1.48291 1.42027 1.10783 1.09765 1.24144 0.96685 1.09981 0.76796 1.20334 0.87752 0.75478 0.76671 1.93279 1.96429 1.30490 1.95723 1.93308 1.96014 1.90933 1.33223 1.93237 1.65965 1.81730 1.74767 0.92607 0.97015 0.97848 0.82360 0.81488 0.77977 0.76694 0.78460 0.79561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.56 13.29 21.45 0.28 -54.27 16 2 C 0.00 -0.22 5.46 84.66 0.46 0.24 16 3 Si 0.97 40.70 29.54 68.60 2.03 42.72 16 4 H -0.25 -9.60 7.11 99.48 0.71 -8.89 16 5 H -0.28 -11.68 7.11 99.48 0.71 -10.98 16 6 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 7 C -0.53 -26.75 9.11 25.60 0.23 -26.52 16 8 H 0.08 3.77 7.74 -2.91 -0.02 3.75 16 9 C 0.02 0.74 4.98 29.85 0.15 0.89 16 10 C -0.56 -15.76 5.74 71.98 0.41 -15.35 16 11 S 2.40 65.74 4.70 -56.49 -0.27 65.48 16 12 O -0.97 -36.74 18.10 -127.37 -2.30 -39.05 16 13 O -0.96 -29.66 17.32 -127.37 -2.21 -31.87 16 14 C -0.54 -8.28 5.94 71.24 0.42 -7.86 16 15 C 0.20 4.61 7.20 138.13 0.99 5.60 16 16 N -0.30 -8.84 12.36 -50.45 -0.62 -9.46 16 17 N -0.08 -2.54 13.43 37.01 0.50 -2.05 16 18 N -0.07 -1.77 13.29 37.02 0.49 -1.28 16 19 N -0.31 -6.25 3.21 -338.28 -1.08 -7.33 16 20 C 0.05 0.52 6.03 86.38 0.52 1.04 16 21 C 0.45 5.37 3.29 71.98 0.24 5.61 16 22 F -0.18 -2.84 17.24 44.97 0.78 -2.06 16 23 F -0.15 -1.66 17.32 44.97 0.78 -0.88 16 24 F -0.18 -2.22 15.74 44.97 0.71 -1.51 16 25 H 0.27 14.54 8.31 -92.71 -0.77 13.77 16 26 H 0.01 0.58 8.14 -2.39 -0.02 0.56 16 27 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 28 H 0.16 3.53 8.14 -2.39 -0.02 3.51 16 29 H 0.17 3.31 8.14 -2.39 -0.02 3.29 16 30 H 0.20 1.18 6.46 -2.39 -0.02 1.17 16 31 H 0.22 1.89 8.14 -2.39 -0.02 1.87 16 32 H 0.20 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.19 1.39 6.95 -2.39 -0.02 1.37 16 Total: -1.00 -82.31 322.91 3.69 -78.61 By element: Atomic # 1 Polarization: -1.88 SS G_CDS: 1.18 Total: -0.70 kcal Atomic # 6 Polarization: -39.79 SS G_CDS: 3.43 Total: -36.36 kcal Atomic # 7 Polarization: -73.96 SS G_CDS: -0.43 Total: -74.39 kcal Atomic # 8 Polarization: -66.41 SS G_CDS: -4.51 Total: -70.92 kcal Atomic # 9 Polarization: -6.71 SS G_CDS: 2.26 Total: -4.45 kcal Atomic # 14 Polarization: 40.70 SS G_CDS: 2.03 Total: 42.72 kcal Atomic # 16 Polarization: 65.74 SS G_CDS: -0.27 Total: 65.48 kcal Total: -82.31 3.69 -78.61 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320893595.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.961 kcal (2) G-P(sol) polarization free energy of solvation -82.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds