Wall clock time and date at job start Tue Mar 31 2020 15:02:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45204 * 109.47398 * 2 1 4 4 C 1.34754 * 117.00312 * 179.97438 * 3 2 1 5 5 O 1.21471 * 119.99837 * 0.02562 * 4 3 2 6 6 C 1.47626 * 119.99834 * 180.02562 * 4 3 2 7 7 N 1.30316 * 124.74001 * 359.97211 * 6 4 3 8 8 C 1.30287 * 117.41153 * 180.02562 * 7 6 4 9 9 C 1.37278 * 113.99957 * 0.02562 * 8 7 6 10 10 C 1.47015 * 126.15516 * 179.97438 * 9 8 7 11 11 O 1.21543 * 120.00417 * 359.97438 * 10 9 8 12 12 O 1.34817 * 119.99567 * 179.97438 * 10 9 8 13 13 C 1.45206 * 116.99938 * 180.02562 * 12 10 9 14 14 C 1.50703 * 109.47147 * 179.97438 * 13 12 10 15 15 O 1.21296 * 119.99996 * 359.97438 * 14 13 12 16 16 N 1.34775 * 119.99773 * 179.97438 * 14 13 12 17 17 C 1.37099 * 119.99644 * 180.02562 * 16 14 13 18 18 H 1.07998 * 120.00405 * 359.97438 * 17 16 14 19 19 C 1.38956 * 119.99908 * 180.02562 * 17 16 14 20 20 N 1.31405 * 120.00192 * 179.97438 * 19 17 16 21 21 Si 1.86799 * 119.99862 * 359.97438 * 19 17 16 22 22 H 1.48505 * 109.47299 * 89.99983 * 21 19 17 23 23 H 1.48501 * 109.47275 * 210.00281 * 21 19 17 24 24 H 1.48501 * 109.47006 * 330.00209 * 21 19 17 25 25 S 1.70935 * 124.73334 * 180.33410 * 6 4 3 26 26 H 1.08997 * 109.47169 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47286 * 299.99947 * 1 2 3 28 28 H 1.08998 * 109.46885 * 59.99997 * 1 2 3 29 29 H 1.09002 * 109.47286 * 240.00053 * 2 1 3 30 30 H 1.08999 * 109.47249 * 120.00402 * 2 1 3 31 31 H 1.07997 * 122.99450 * 180.02562 * 8 7 6 32 32 H 1.09001 * 109.47157 * 299.99785 * 13 12 10 33 33 H 1.09004 * 109.47122 * 59.99918 * 13 12 10 34 34 H 0.96998 * 120.00166 * 0.02562 * 16 14 13 35 35 H 0.96997 * 120.00335 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3690 0.0000 4 6 3.3500 1.5455 0.0005 5 8 4.0899 0.5822 0.0005 6 6 3.9142 2.9097 0.0011 7 7 3.2084 4.0052 0.0007 8 6 3.8559 5.1358 0.0008 9 6 5.2216 4.9972 0.0009 10 6 6.2045 6.0905 0.0005 11 8 5.8280 7.2462 -0.0004 12 8 7.5234 5.8112 0.0011 13 6 8.4363 6.9403 0.0013 14 6 9.8571 6.4376 0.0026 15 8 10.0784 5.2450 0.0039 16 7 10.8816 7.3132 0.0025 17 6 12.1741 6.8559 0.0032 18 1 12.3712 5.7940 0.0043 19 6 13.2305 7.7586 0.0035 20 7 14.4693 7.3203 0.0047 21 14 12.8896 9.5952 0.0023 22 1 12.7981 10.0826 1.4021 23 1 13.9919 10.3028 -0.6973 24 1 11.6076 9.8602 -0.6988 25 16 5.5845 3.2728 -0.0063 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 3.3621 6.0963 0.0009 32 1 8.2656 7.5457 -0.8890 33 1 8.2648 7.5461 0.8911 34 1 10.7046 8.2669 0.0018 35 1 15.2067 7.9504 0.0046 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001321238202.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:02:04 Heat of formation + Delta-G solvation = -142.378423 kcal Electronic energy + Delta-G solvation = -23688.505728 eV Core-core repulsion = 19587.016111 eV Total energy + Delta-G solvation = -4101.489617 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.065 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.07758 -40.63632 -39.72400 -38.37581 -37.14430 -36.39113 -34.12894 -32.41079 -31.86856 -31.39791 -28.99887 -27.57854 -24.72360 -24.12805 -23.05369 -22.35211 -20.48418 -19.73673 -19.35685 -18.70428 -17.87678 -17.39234 -17.17982 -16.93579 -16.68309 -16.17620 -15.64823 -15.26719 -15.09216 -14.75253 -14.44457 -14.00967 -13.98849 -13.77954 -13.26053 -13.03830 -12.62832 -12.45267 -12.44315 -12.28524 -12.09665 -11.97403 -11.46683 -11.31353 -11.02850 -11.02026 -10.74043 -10.68723 -10.38181 -10.09552 -10.08405 -9.73057 -9.66950 -8.75252 -8.34740 -6.43693 -3.97041 -0.77471 0.37844 1.03465 1.34913 2.08201 2.21058 2.29425 2.60483 2.94906 2.99815 3.09102 3.47758 3.51858 3.99514 4.19171 4.30558 4.46790 4.48922 4.55421 4.77745 4.79871 5.05352 5.15471 5.21850 5.31894 5.43352 5.46158 5.50036 5.58146 5.81414 6.15312 6.79800 7.16966 7.34709 7.46668 7.95026 8.41769 8.78513 9.24345 9.58477 10.68338 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.033233 B = 0.002130 C = 0.002005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.338226 B =13145.071161 C =13961.655299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.060 3.940 3 O -0.328 6.328 4 C 0.553 3.447 5 O -0.486 6.486 6 C -0.038 4.038 7 N -0.422 5.422 8 C 0.124 3.876 9 C -0.277 4.277 10 C 0.543 3.457 11 O -0.488 6.488 12 O -0.320 6.320 13 C 0.060 3.940 14 C 0.445 3.555 15 O -0.556 6.556 16 N -0.576 5.576 17 C -0.310 4.310 18 H 0.123 0.877 19 C 0.046 3.954 20 N -0.873 5.873 21 Si 0.879 3.121 22 H -0.268 1.268 23 H -0.274 1.274 24 H -0.268 1.268 25 S 0.395 5.605 26 H 0.083 0.917 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.202 0.798 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.373 0.627 35 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.120 -7.193 -0.012 27.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.014 4.014 3 O -0.244 6.244 4 C 0.392 3.608 5 O -0.372 6.372 6 C -0.306 4.306 7 N -0.140 5.140 8 C -0.040 4.040 9 C -0.401 4.401 10 C 0.384 3.616 11 O -0.378 6.378 12 O -0.234 6.234 13 C -0.017 4.017 14 C 0.230 3.770 15 O -0.438 6.438 16 N -0.216 5.216 17 C -0.438 4.438 18 H 0.141 0.859 19 C -0.158 4.158 20 N -0.511 5.511 21 Si 0.705 3.295 22 H -0.194 1.194 23 H -0.199 1.199 24 H -0.193 1.193 25 S 0.654 5.346 26 H 0.101 0.899 27 H 0.088 0.912 28 H 0.088 0.912 29 H 0.094 0.906 30 H 0.094 0.906 31 H 0.219 0.781 32 H 0.111 0.889 33 H 0.111 0.889 34 H 0.207 0.793 35 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -25.235 -8.775 -0.021 26.717 hybrid contribution -0.533 2.485 -0.010 2.541 sum -25.768 -6.290 -0.031 26.524 Atomic orbital electron populations 1.21815 0.92050 1.03190 1.03914 1.23234 0.95818 0.79201 1.03157 1.86665 1.21791 1.32838 1.83063 1.19472 0.81725 0.86285 0.73279 1.90953 1.60587 1.40398 1.45266 1.26009 0.97460 0.95682 1.11458 1.66339 1.38427 0.96754 1.12471 1.22577 0.87685 0.97673 0.96105 1.25969 0.97630 0.98106 1.18439 1.19343 0.81950 0.86643 0.73658 1.90894 1.80905 1.20391 1.45584 1.86615 1.14928 1.38752 1.83128 1.22880 0.88308 0.86445 1.04108 1.19108 0.84561 0.87410 0.85916 1.90617 1.84323 1.15236 1.53653 1.42016 1.06256 1.07063 1.66287 1.19427 0.78614 0.96886 1.48843 0.85938 1.25044 0.94888 0.98728 0.97164 1.69607 0.98130 1.35391 1.48016 0.86680 0.78734 0.84968 0.79122 1.19370 1.19904 1.19335 1.84788 0.99663 0.94861 1.55288 0.89879 0.91219 0.91227 0.90643 0.90641 0.78119 0.88890 0.88886 0.79335 0.91314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.69 10.29 37.16 0.38 -0.31 16 2 C 0.06 0.41 6.20 37.16 0.23 0.64 16 3 O -0.33 -3.29 10.20 -40.64 -0.41 -3.70 16 4 C 0.55 6.24 7.97 34.56 0.28 6.52 16 5 O -0.49 -6.13 16.64 -19.24 -0.32 -6.45 16 6 C -0.04 -0.43 7.24 -14.36 -0.10 -0.53 16 7 N -0.42 -4.76 10.47 -12.04 -0.13 -4.88 16 8 C 0.12 1.28 11.17 -18.56 -0.21 1.08 16 9 C -0.28 -3.30 6.56 -36.38 -0.24 -3.54 16 10 C 0.54 7.75 7.95 34.29 0.27 8.02 16 11 O -0.49 -7.41 16.67 -19.30 -0.32 -7.73 16 12 O -0.32 -5.33 9.66 -47.50 -0.46 -5.79 16 13 C 0.06 1.00 5.96 36.01 0.21 1.21 16 14 C 0.45 9.84 7.86 -10.98 -0.09 9.75 16 15 O -0.56 -14.69 16.08 -14.11 -0.23 -14.91 16 16 N -0.58 -13.17 5.09 -10.96 -0.06 -13.22 16 17 C -0.31 -8.44 10.16 -14.93 -0.15 -8.59 16 18 H 0.12 3.82 7.39 -52.49 -0.39 3.43 16 19 C 0.05 1.22 5.50 -17.47 -0.10 1.12 16 20 N -0.87 -24.62 13.96 55.50 0.77 -23.85 16 21 Si 0.88 18.55 27.74 -169.99 -4.71 13.83 16 22 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 23 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 24 H -0.27 -5.12 6.52 56.52 0.37 -4.75 16 25 S 0.40 4.48 22.79 -107.50 -2.45 2.03 16 26 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 27 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 28 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 29 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.20 1.63 8.06 -52.49 -0.42 1.20 16 32 H 0.09 1.34 8.14 -51.93 -0.42 0.91 16 33 H 0.09 1.33 8.14 -51.93 -0.42 0.90 16 34 H 0.37 7.36 5.76 -40.82 -0.24 7.13 16 35 H 0.28 7.17 8.31 -40.82 -0.34 6.83 16 LS Contribution 343.37 15.07 5.17 5.17 Total: -1.00 -33.51 343.37 -5.82 -39.33 By element: Atomic # 1 Polarization: 7.98 SS G_CDS: -3.17 Total: 4.81 kcal Atomic # 6 Polarization: 14.88 SS G_CDS: 0.49 Total: 15.37 kcal Atomic # 7 Polarization: -42.54 SS G_CDS: 0.59 Total: -41.95 kcal Atomic # 8 Polarization: -36.85 SS G_CDS: -1.74 Total: -38.59 kcal Atomic # 14 Polarization: 18.55 SS G_CDS: -4.71 Total: 13.83 kcal Atomic # 16 Polarization: 4.48 SS G_CDS: -2.45 Total: 2.03 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -33.51 -5.82 -39.33 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321238202.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.049 kcal (2) G-P(sol) polarization free energy of solvation -33.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds