Wall clock time and date at job start Tue Mar 31 2020 15:02:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45204 * 109.47398 * 2 1 4 4 C 1.34754 * 117.00312 * 179.97438 * 3 2 1 5 5 O 1.21471 * 119.99837 * 0.02562 * 4 3 2 6 6 C 1.47626 * 119.99834 * 180.02562 * 4 3 2 7 7 N 1.30316 * 124.74001 * 359.97211 * 6 4 3 8 8 C 1.30287 * 117.41153 * 180.02562 * 7 6 4 9 9 C 1.37278 * 113.99957 * 0.02562 * 8 7 6 10 10 C 1.47015 * 126.15516 * 179.97438 * 9 8 7 11 11 O 1.21543 * 120.00417 * 359.97438 * 10 9 8 12 12 O 1.34817 * 119.99567 * 179.97438 * 10 9 8 13 13 C 1.45206 * 116.99938 * 180.02562 * 12 10 9 14 14 C 1.50703 * 109.47147 * 179.97438 * 13 12 10 15 15 O 1.21296 * 119.99996 * 359.97438 * 14 13 12 16 16 N 1.34775 * 119.99773 * 179.97438 * 14 13 12 17 17 C 1.37099 * 119.99644 * 180.02562 * 16 14 13 18 18 H 1.07998 * 120.00405 * 359.97438 * 17 16 14 19 19 C 1.38956 * 119.99908 * 180.02562 * 17 16 14 20 20 N 1.31405 * 120.00192 * 179.97438 * 19 17 16 21 21 Si 1.86799 * 119.99862 * 359.97438 * 19 17 16 22 22 H 1.48505 * 109.47299 * 89.99983 * 21 19 17 23 23 H 1.48501 * 109.47275 * 210.00281 * 21 19 17 24 24 H 1.48501 * 109.47006 * 330.00209 * 21 19 17 25 25 S 1.70935 * 124.73334 * 180.33410 * 6 4 3 26 26 H 1.08997 * 109.47169 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47286 * 299.99947 * 1 2 3 28 28 H 1.08998 * 109.46885 * 59.99997 * 1 2 3 29 29 H 1.09002 * 109.47286 * 240.00053 * 2 1 3 30 30 H 1.08999 * 109.47249 * 120.00402 * 2 1 3 31 31 H 1.07997 * 122.99450 * 180.02562 * 8 7 6 32 32 H 1.09001 * 109.47157 * 299.99785 * 13 12 10 33 33 H 1.09004 * 109.47122 * 59.99918 * 13 12 10 34 34 H 0.96998 * 120.00166 * 0.02562 * 16 14 13 35 35 H 0.96997 * 120.00335 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3690 0.0000 4 6 3.3500 1.5455 0.0005 5 8 4.0899 0.5822 0.0005 6 6 3.9142 2.9097 0.0011 7 7 3.2084 4.0052 0.0007 8 6 3.8559 5.1358 0.0008 9 6 5.2216 4.9972 0.0009 10 6 6.2045 6.0905 0.0005 11 8 5.8280 7.2462 -0.0004 12 8 7.5234 5.8112 0.0011 13 6 8.4363 6.9403 0.0013 14 6 9.8571 6.4376 0.0026 15 8 10.0784 5.2450 0.0039 16 7 10.8816 7.3132 0.0025 17 6 12.1741 6.8559 0.0032 18 1 12.3712 5.7940 0.0043 19 6 13.2305 7.7586 0.0035 20 7 14.4693 7.3203 0.0047 21 14 12.8896 9.5952 0.0023 22 1 12.7981 10.0826 1.4021 23 1 13.9919 10.3028 -0.6973 24 1 11.6076 9.8602 -0.6988 25 16 5.5845 3.2728 -0.0063 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 3.3621 6.0963 0.0009 32 1 8.2656 7.5457 -0.8890 33 1 8.2648 7.5461 0.8911 34 1 10.7046 8.2669 0.0018 35 1 15.2067 7.9504 0.0046 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001321238202.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:02:03 Heat of formation + Delta-G solvation = -165.662776 kcal Electronic energy + Delta-G solvation = -23689.515413 eV Core-core repulsion = 19587.016111 eV Total energy + Delta-G solvation = -4102.499302 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.065 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.98860 -41.71485 -40.72273 -40.08831 -37.95889 -37.64176 -36.08886 -33.87055 -33.06628 -32.20555 -30.36309 -28.61943 -26.49781 -24.85915 -24.04950 -23.14351 -21.56372 -21.37806 -20.54508 -20.37500 -18.84052 -18.49177 -18.01000 -17.97702 -17.83233 -17.39789 -17.20064 -16.66879 -16.18224 -15.81567 -15.69125 -15.33043 -14.90988 -14.74959 -14.73389 -14.23702 -14.05043 -13.87963 -13.65874 -13.05442 -13.00294 -12.88360 -12.57905 -12.45268 -12.35730 -12.13570 -11.99845 -11.97692 -11.62495 -11.58345 -11.28019 -11.00485 -10.62300 -10.55479 -10.33967 -8.45450 -6.08887 -1.69335 -0.51094 0.15165 0.44365 1.04785 1.22270 1.31240 1.34676 1.36923 1.45706 1.67828 1.75994 2.21078 2.66887 2.77361 3.09089 3.40658 3.55441 3.74591 3.89713 3.99275 4.00939 4.09695 4.13009 4.31913 4.65185 4.73893 4.92031 4.97390 4.99417 5.29401 5.47016 5.85662 5.94510 6.27065 6.32743 6.50008 6.77532 7.25700 7.77406 8.70997 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.033233 B = 0.002130 C = 0.002005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.338226 B =13145.071161 C =13961.655299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.050 3.950 3 O -0.333 6.333 4 C 0.554 3.446 5 O -0.504 6.504 6 C -0.033 4.033 7 N -0.429 5.429 8 C 0.143 3.857 9 C -0.291 4.291 10 C 0.551 3.449 11 O -0.495 6.495 12 O -0.341 6.341 13 C 0.069 3.931 14 C 0.447 3.553 15 O -0.608 6.608 16 N -0.574 5.574 17 C -0.333 4.333 18 H 0.061 0.939 19 C -0.008 4.008 20 N -0.925 5.925 21 Si 0.961 3.039 22 H -0.255 1.255 23 H -0.274 1.274 24 H -0.228 1.228 25 S 0.389 5.611 26 H 0.105 0.895 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.228 0.772 32 H 0.125 0.875 33 H 0.126 0.874 34 H 0.394 0.606 35 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.999 -4.840 -0.055 29.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.023 4.023 3 O -0.249 6.249 4 C 0.394 3.606 5 O -0.392 6.392 6 C -0.301 4.301 7 N -0.147 5.147 8 C -0.021 4.021 9 C -0.415 4.415 10 C 0.393 3.607 11 O -0.385 6.385 12 O -0.257 6.257 13 C -0.007 4.007 14 C 0.234 3.766 15 O -0.493 6.493 16 N -0.216 5.216 17 C -0.462 4.462 18 H 0.079 0.921 19 C -0.208 4.208 20 N -0.565 5.565 21 Si 0.781 3.219 22 H -0.180 1.180 23 H -0.199 1.199 24 H -0.152 1.152 25 S 0.648 5.352 26 H 0.124 0.876 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.098 0.902 30 H 0.098 0.902 31 H 0.244 0.756 32 H 0.143 0.857 33 H 0.144 0.856 34 H 0.230 0.770 35 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -28.158 -6.419 -0.066 28.880 hybrid contribution 0.278 1.551 0.008 1.576 sum -27.880 -4.868 -0.058 28.302 Atomic orbital electron populations 1.21848 0.90106 1.04651 1.03810 1.23580 0.97311 0.77815 1.03619 1.86668 1.20851 1.34825 1.82518 1.19496 0.82143 0.86041 0.72916 1.90943 1.61080 1.40917 1.46257 1.26096 0.97357 0.95928 1.10694 1.66417 1.38433 0.96927 1.12932 1.22965 0.87016 0.98259 0.93907 1.25826 0.97688 0.97521 1.20433 1.19424 0.81121 0.87071 0.73066 1.90886 1.80730 1.20709 1.46163 1.86601 1.16176 1.39167 1.83733 1.22760 0.84414 0.86361 1.07211 1.20155 0.86759 0.86613 0.83088 1.90597 1.85727 1.17779 1.55158 1.41783 1.04847 1.08245 1.66713 1.18997 0.81396 0.94677 1.51135 0.92115 1.26101 0.93887 1.05254 0.95553 1.69779 0.99665 1.38044 1.49008 0.85421 0.80304 0.76055 0.80162 1.17954 1.19886 1.15164 1.84887 0.99943 0.95068 1.55326 0.87608 0.91296 0.91303 0.90222 0.90223 0.75598 0.85688 0.85608 0.76977 0.90846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 10.29 71.98 0.74 -0.34 16 2 C 0.05 0.63 6.20 71.98 0.45 1.07 16 3 O -0.33 -6.37 10.20 -56.65 -0.58 -6.95 16 4 C 0.55 12.19 7.97 70.30 0.56 12.75 16 5 O -0.50 -12.64 16.64 19.93 0.33 -12.31 16 6 C -0.03 -0.71 7.24 87.40 0.63 -0.07 16 7 N -0.43 -8.92 10.47 -192.00 -2.01 -10.93 16 8 C 0.14 2.64 11.17 84.70 0.95 3.58 16 9 C -0.29 -6.46 6.56 24.35 0.16 -6.30 16 10 C 0.55 14.55 7.95 70.12 0.56 15.10 16 11 O -0.50 -13.48 16.67 19.69 0.33 -13.15 16 12 O -0.34 -10.87 9.66 -50.90 -0.49 -11.36 16 13 C 0.07 2.12 5.96 71.24 0.42 2.54 16 14 C 0.45 19.62 7.86 87.66 0.69 20.31 16 15 O -0.61 -33.24 16.08 15.72 0.25 -32.98 16 16 N -0.57 -25.86 5.09 -306.98 -1.56 -27.42 16 17 C -0.33 -18.82 10.16 84.04 0.85 -17.97 16 18 H 0.06 4.10 7.39 -2.91 -0.02 4.08 16 19 C -0.01 -0.42 5.50 84.93 0.47 0.04 16 20 N -0.93 -53.98 13.96 21.66 0.30 -53.68 16 21 Si 0.96 36.84 27.74 68.60 1.90 38.75 16 22 H -0.26 -9.28 7.11 99.48 0.71 -8.57 16 23 H -0.27 -10.49 7.11 99.48 0.71 -9.79 16 24 H -0.23 -7.25 6.52 99.48 0.65 -6.60 16 25 S 0.39 8.65 22.79 -56.49 -1.29 7.36 16 26 H 0.11 0.31 8.14 -2.39 -0.02 0.29 16 27 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 28 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 29 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.23 2.91 8.06 -2.91 -0.02 2.89 16 32 H 0.13 3.09 8.14 -2.39 -0.02 3.07 16 33 H 0.13 3.09 8.14 -2.38 -0.02 3.07 16 34 H 0.39 14.34 5.76 -92.71 -0.53 13.81 16 35 H 0.28 14.98 8.31 -92.71 -0.77 14.21 16 Total: -1.00 -76.89 343.37 4.24 -72.65 By element: Atomic # 1 Polarization: 18.72 SS G_CDS: 0.58 Total: 19.30 kcal Atomic # 6 Polarization: 24.25 SS G_CDS: 6.48 Total: 30.72 kcal Atomic # 7 Polarization: -88.76 SS G_CDS: -3.27 Total: -92.03 kcal Atomic # 8 Polarization: -76.59 SS G_CDS: -0.16 Total: -76.75 kcal Atomic # 14 Polarization: 36.84 SS G_CDS: 1.90 Total: 38.75 kcal Atomic # 16 Polarization: 8.65 SS G_CDS: -1.29 Total: 7.36 kcal Total: -76.89 4.24 -72.65 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321238202.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.014 kcal (2) G-P(sol) polarization free energy of solvation -76.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds