Wall clock time and date at job start Tue Mar 31 2020 14:45:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99759 * 2 1 4 4 H 1.48507 * 109.46745 * 270.00058 * 3 2 1 5 5 H 1.48499 * 109.47081 * 29.99623 * 3 2 1 6 6 H 1.48493 * 109.47380 * 149.99835 * 3 2 1 7 7 C 1.37874 * 120.00346 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00062 * 0.02562 * 7 2 1 9 9 C 1.50702 * 119.99869 * 179.97438 * 7 2 1 10 10 C 1.53007 * 109.47013 * 180.02562 * 9 7 2 11 11 C 1.50692 * 109.46961 * 180.02562 * 10 9 7 12 12 O 1.21278 * 120.00575 * 0.02562 * 11 10 9 13 13 N 1.34779 * 119.99824 * 179.97438 * 11 10 9 14 14 S 1.65607 * 120.00122 * 180.02562 * 13 11 10 15 15 O 1.42107 * 106.40053 * 311.46444 * 14 13 11 16 16 O 1.42099 * 106.40001 * 178.54322 * 14 13 11 17 17 C 1.76198 * 107.21643 * 64.99930 * 14 13 11 18 18 C 1.38252 * 120.00213 * 269.97972 * 17 14 13 19 19 C 1.38212 * 119.99855 * 180.02562 * 18 17 14 20 20 C 1.38254 * 120.00343 * 359.95229 * 19 18 17 21 21 C 1.38218 * 119.99671 * 0.13884 * 20 19 18 22 22 N 1.48026 * 119.99635 * 179.97438 * 21 20 19 23 23 O 1.21802 * 119.99232 * 179.88761 * 22 21 20 24 24 O 1.21794 * 119.99957 * 359.88958 * 22 21 20 25 25 C 1.38215 * 119.99492 * 90.00282 * 17 14 13 26 26 H 0.96988 * 120.00519 * 0.02562 * 1 2 3 27 27 H 1.08994 * 109.46933 * 60.00915 * 9 7 2 28 28 H 1.09001 * 109.47442 * 300.00317 * 9 7 2 29 29 H 1.09004 * 109.46824 * 59.99862 * 10 9 7 30 30 H 1.09001 * 109.46930 * 300.00208 * 10 9 7 31 31 H 0.96998 * 120.00245 * 0.02562 * 13 11 10 32 32 H 1.08001 * 120.00307 * 359.97438 * 18 17 14 33 33 H 1.07999 * 119.99956 * 179.97438 * 19 18 17 34 34 H 1.07997 * 120.00492 * 180.02562 * 20 19 18 35 35 H 1.07995 * 120.00164 * 359.70284 * 25 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0464 -1.4002 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4404 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4647 -2.1293 0.0005 9 6 3.5116 -1.1939 0.0000 10 6 4.0217 -2.6364 0.0001 11 6 5.5287 -2.6362 0.0001 12 8 6.1351 -1.5860 0.0005 13 7 6.2026 -3.8034 0.0008 14 16 7.8587 -3.8034 0.0015 15 8 8.2603 -2.9010 -1.0202 16 8 8.2599 -5.1661 0.0367 17 6 8.3795 -3.0916 1.5268 18 6 8.5845 -1.7274 1.6188 19 6 8.9935 -1.1693 2.8152 20 6 9.1969 -1.9749 3.9202 21 6 8.9938 -3.3389 3.8277 22 7 9.2120 -4.2016 5.0107 23 8 9.0311 -5.4033 4.9296 24 8 9.5725 -3.7096 6.0649 25 6 8.5837 -3.8972 2.6312 26 1 -0.4850 0.8399 -0.0004 27 1 3.8752 -0.6796 0.8895 28 1 3.8746 -0.6805 -0.8905 29 1 3.6580 -3.1504 -0.8897 30 1 3.6587 -3.1500 0.8903 31 1 5.7177 -4.6435 0.0008 32 1 8.4257 -1.0980 0.7556 33 1 9.1540 -0.1037 2.8870 34 1 9.5161 -1.5387 4.8552 35 1 8.4193 -4.9622 2.5605 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324012503.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:45:06 Heat of formation + Delta-G solvation = -112.791515 kcal Electronic energy + Delta-G solvation = -25332.657809 eV Core-core repulsion = 21232.451176 eV Total energy + Delta-G solvation = -4100.206632 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.065 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.43379 -41.25958 -40.62214 -38.67142 -37.84040 -37.36425 -35.66852 -35.59363 -33.46027 -33.28602 -32.94356 -28.33513 -27.88549 -24.99683 -24.11599 -23.85017 -21.87129 -21.45773 -20.58760 -19.91897 -19.45181 -18.98269 -18.77461 -18.42178 -17.95319 -17.64290 -17.07844 -16.72579 -16.26575 -16.06718 -15.60434 -15.48325 -14.75378 -14.68779 -14.55391 -14.09942 -13.86376 -13.67710 -13.56114 -13.43129 -13.36727 -12.92777 -12.86325 -12.57381 -12.42583 -12.42141 -12.19401 -11.99808 -11.95316 -11.74231 -11.44081 -11.34423 -11.11258 -10.83411 -10.75500 -8.28575 -6.32195 -1.46803 -1.24037 -0.76954 0.04182 0.11917 0.96351 1.37151 1.37446 1.39733 1.50942 1.82897 2.28159 2.36914 2.82011 3.08074 3.12083 3.25728 3.41501 3.48882 3.60567 3.76321 3.91841 4.17783 4.27609 4.32719 4.47073 4.53847 4.66745 4.91183 4.95762 5.18799 5.36129 5.45197 5.57240 5.63870 6.23972 6.31650 6.40985 6.77340 7.33384 8.86971 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.013620 B = 0.003571 C = 0.003237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2055.234260 B = 7838.016492 C = 8647.058148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C 0.011 3.989 3 Si 0.937 3.063 4 H -0.271 1.271 5 H -0.286 1.286 6 H -0.249 1.249 7 C -0.529 4.529 8 H 0.051 0.949 9 C -0.003 4.003 10 C -0.122 4.122 11 C 0.543 3.457 12 O -0.520 6.520 13 N -1.038 6.038 14 S 2.701 3.299 15 O -0.950 6.950 16 O -0.947 6.947 17 C -0.684 4.684 18 C 0.038 3.962 19 C -0.124 4.124 20 C 0.007 3.993 21 C -0.083 4.083 22 N 0.030 4.970 23 O -0.181 6.181 24 O -0.155 6.155 25 C 0.041 3.959 26 H 0.266 0.734 27 H 0.022 0.978 28 H 0.017 0.983 29 H 0.119 0.881 30 H 0.121 0.879 31 H 0.455 0.545 32 H 0.167 0.833 33 H 0.196 0.804 34 H 0.188 0.812 35 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.411 -6.200 5.497 22.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.187 4.187 3 Si 0.761 3.239 4 H -0.196 1.196 5 H -0.212 1.212 6 H -0.173 1.173 7 C -0.567 4.567 8 H 0.069 0.931 9 C -0.042 4.042 10 C -0.163 4.163 11 C 0.332 3.668 12 O -0.393 6.393 13 N -0.807 5.807 14 S 2.792 3.208 15 O -0.940 6.940 16 O -0.937 6.937 17 C -0.772 4.772 18 C 0.019 3.981 19 C -0.142 4.142 20 C -0.012 4.012 21 C -0.167 4.167 22 N 0.548 4.452 23 O -0.392 6.392 24 O -0.374 6.374 25 C 0.021 3.979 26 H 0.075 0.925 27 H 0.040 0.960 28 H 0.036 0.964 29 H 0.137 0.863 30 H 0.139 0.861 31 H 0.297 0.703 32 H 0.185 0.815 33 H 0.213 0.787 34 H 0.205 0.795 35 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 21.114 -5.259 4.258 22.172 hybrid contribution -0.473 0.275 0.898 1.052 sum 20.641 -4.985 5.156 21.851 Atomic orbital electron populations 1.70029 1.08029 1.28053 1.52591 1.25838 0.95424 1.03013 0.94385 0.85856 0.79614 0.79344 0.79085 1.19629 1.21169 1.17268 1.21429 0.91407 0.93654 1.50188 0.93096 1.19352 0.93965 0.93477 0.97373 1.21738 0.86907 1.00883 1.06765 1.21319 0.92766 0.81561 0.71108 1.90772 1.70691 1.31366 1.46450 1.54800 1.28145 1.16965 1.80791 1.01940 0.72409 0.72994 0.73476 1.93639 1.80403 1.66191 1.53749 1.93651 1.80066 1.33108 1.86912 1.30806 1.20831 1.05074 1.20473 1.21870 0.83569 0.92469 1.00204 1.21854 0.99112 1.03172 0.90107 1.21816 0.88003 0.89255 1.02129 1.21323 1.16303 0.92399 0.86676 1.43726 0.97535 1.01537 1.02404 1.94575 1.55830 0.97692 1.91115 1.94527 1.47926 1.77759 1.17154 1.20857 0.86481 1.02261 0.88326 0.92533 0.95980 0.96419 0.86334 0.86118 0.70341 0.81533 0.78734 0.79504 0.80525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.61 13.96 21.45 0.30 -56.31 16 2 C 0.01 0.61 5.47 84.65 0.46 1.07 16 3 Si 0.94 42.82 27.47 68.60 1.88 44.71 16 4 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 5 H -0.29 -12.88 7.11 99.48 0.71 -12.17 16 6 H -0.25 -10.73 6.54 99.48 0.65 -10.08 16 7 C -0.53 -27.67 9.66 25.60 0.25 -27.42 16 8 H 0.05 2.83 7.99 -2.91 -0.02 2.81 16 9 C 0.00 -0.14 3.33 29.85 0.10 -0.05 16 10 C -0.12 -3.55 5.64 29.85 0.17 -3.39 16 11 C 0.54 14.13 7.66 87.65 0.67 14.80 16 12 O -0.52 -16.38 13.18 13.28 0.18 -16.20 16 13 N -1.04 -18.83 5.70 -173.54 -0.99 -19.82 16 14 S 2.70 56.34 5.40 -56.49 -0.30 56.04 16 15 O -0.95 -26.20 16.23 -120.90 -1.96 -28.16 16 16 O -0.95 -21.16 17.28 -128.00 -2.21 -23.37 16 17 C -0.68 -13.06 5.75 22.27 0.13 -12.94 16 18 C 0.04 0.67 8.53 22.27 0.19 0.86 16 19 C -0.12 -1.52 10.05 22.27 0.22 -1.30 16 20 C 0.01 0.09 9.56 22.27 0.21 0.30 16 21 C -0.08 -1.57 6.85 36.37 0.25 -1.32 16 22 N 0.03 0.70 4.45 -46.46 -0.21 0.49 16 23 O -0.18 -4.57 18.45 18.88 0.35 -4.22 16 24 O -0.16 -3.58 18.45 18.89 0.35 -3.24 16 25 C 0.04 0.76 9.03 22.27 0.20 0.96 16 26 H 0.27 14.96 8.31 -92.72 -0.77 14.19 16 27 H 0.02 0.94 7.15 -2.39 -0.02 0.92 16 28 H 0.02 0.76 7.53 -2.39 -0.02 0.74 16 29 H 0.12 3.07 8.14 -2.39 -0.02 3.05 16 30 H 0.12 3.02 8.14 -2.39 -0.02 3.00 16 31 H 0.46 4.60 8.83 -96.75 -0.85 3.74 16 32 H 0.17 3.11 6.85 -2.91 -0.02 3.09 16 33 H 0.20 1.02 8.06 -2.91 -0.02 0.99 16 34 H 0.19 1.55 7.61 -2.91 -0.02 1.53 16 35 H 0.18 2.91 7.17 -2.91 -0.02 2.89 16 Total: -1.00 -75.67 328.64 0.49 -75.18 By element: Atomic # 1 Polarization: 3.04 SS G_CDS: 0.26 Total: 3.29 kcal Atomic # 6 Polarization: -31.25 SS G_CDS: 2.85 Total: -28.40 kcal Atomic # 7 Polarization: -74.74 SS G_CDS: -0.90 Total: -75.64 kcal Atomic # 8 Polarization: -71.89 SS G_CDS: -3.30 Total: -75.19 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 1.88 Total: 44.71 kcal Atomic # 16 Polarization: 56.34 SS G_CDS: -0.30 Total: 56.04 kcal Total: -75.67 0.49 -75.18 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324012503.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.609 kcal (2) G-P(sol) polarization free energy of solvation -75.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds