Wall clock time and date at job start Tue Mar 31 2020 15:03:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.33332 * 120.00099 * 2 1 4 4 H 1.08003 * 120.00573 * 200.67352 * 3 2 1 5 5 C 1.46788 * 119.99840 * 20.66657 * 3 2 1 6 6 N 1.29320 * 120.00025 * 11.66117 * 5 3 2 7 7 Si 1.86801 * 120.00167 * 191.65529 * 5 3 2 8 8 H 1.48498 * 109.46936 * 59.99940 * 7 5 3 9 9 H 1.48498 * 109.47172 * 180.02562 * 7 5 3 10 10 H 1.48506 * 109.46968 * 300.00425 * 7 5 3 11 11 C 1.34776 * 120.00243 * 179.97438 * 2 1 3 12 12 O 1.21478 * 119.99674 * 184.71958 * 11 2 1 13 13 C 1.47696 * 120.00029 * 4.72113 * 11 2 1 14 14 C 1.39687 * 120.14823 * 318.77768 * 13 11 2 15 15 C 1.37914 * 119.83962 * 180.02562 * 14 13 11 16 16 N 1.48020 * 119.91817 * 180.02562 * 15 14 13 17 17 O 1.31703 * 119.99382 * 179.97438 * 16 15 14 18 18 O 1.31695 * 120.00064 * 359.97438 * 16 15 14 19 19 C 1.38397 * 120.15467 * 359.97438 * 15 14 13 20 20 C 1.38360 * 120.30886 * 0.02562 * 19 15 14 21 21 S 1.76200 * 119.92061 * 179.97438 * 20 19 15 22 22 C 1.81404 * 104.44749 * 90.00077 * 21 20 19 23 23 O 1.42101 * 104.27616 * 206.07050 * 21 20 19 24 24 O 1.42095 * 104.27990 * 333.93162 * 21 20 19 25 25 C 1.37944 * 120.15463 * 0.02562 * 20 19 15 26 26 H 1.09007 * 109.47047 * 264.79276 * 1 2 3 27 27 H 1.08992 * 109.47289 * 24.79190 * 1 2 3 28 28 H 1.09000 * 109.46698 * 144.79529 * 1 2 3 29 29 H 0.96993 * 120.00080 * 179.97438 * 6 5 3 30 30 H 1.07998 * 120.08275 * 0.02562 * 14 13 11 31 31 H 1.08003 * 119.84493 * 180.27409 * 19 15 14 32 32 H 1.09007 * 109.47315 * 59.99976 * 22 21 20 33 33 H 1.08999 * 109.47116 * 179.97438 * 22 21 20 34 34 H 1.08999 * 109.47499 * 299.99691 * 22 21 20 35 35 H 1.08001 * 120.07903 * 179.97438 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1316 1.1547 0.0000 4 1 3.1595 1.1849 -0.3302 5 6 1.4685 2.3850 0.4487 6 7 0.3263 2.3209 1.0516 7 14 2.2746 4.0432 0.1488 8 1 2.4596 4.2470 -1.3105 9 1 1.4094 5.1200 0.6938 10 1 3.5962 4.0807 0.8252 11 6 2.1389 -1.1672 0.0005 12 8 3.3506 -1.1688 0.0871 13 6 1.4042 -2.4442 -0.1042 14 6 0.2130 -2.6282 0.6018 15 6 -0.4675 -3.8234 0.4998 16 7 -1.7302 -4.0200 1.2467 17 8 -2.3816 -5.1606 1.1500 18 8 -2.2023 -3.0545 2.0078 19 6 0.0269 -4.8388 -0.3001 20 6 1.2062 -4.6633 -1.0021 21 16 1.8267 -5.9633 -2.0168 22 6 1.0794 -5.6644 -3.6425 23 8 3.2283 -5.7336 -2.0625 24 8 1.2967 -7.1460 -1.4343 25 6 1.8978 -3.4735 -0.9085 26 1 -0.3633 -0.0933 1.0235 27 1 -0.3633 0.9329 -0.4309 28 1 -0.3633 -0.8397 -0.5925 29 1 -0.1117 3.1338 1.3484 30 1 -0.1741 -1.8364 1.2260 31 1 -0.5124 -5.7712 -0.3798 32 1 1.3831 -4.6831 -4.0073 33 1 1.4128 -6.4308 -4.3422 34 1 -0.0066 -5.6994 -3.5553 35 1 2.8184 -3.3380 -1.4567 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001325423558.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:03:14 Heat of formation + Delta-G solvation = -19.546627 kcal Electronic energy + Delta-G solvation = -25756.394402 eV Core-core repulsion = 21660.231172 eV Total energy + Delta-G solvation = -4096.163231 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.065 amu Computer time = 1.69 seconds Orbital eigenvalues (eV) -40.53857 -38.88726 -37.77020 -37.39247 -36.22708 -35.12151 -34.42942 -32.68810 -32.04423 -31.55002 -29.85373 -27.00335 -26.51043 -25.45137 -23.68165 -22.73407 -20.54037 -19.09552 -18.37964 -18.15482 -17.41324 -16.88686 -16.70070 -16.47666 -16.23048 -16.07769 -15.88227 -15.27666 -15.04346 -14.45489 -14.05027 -13.73591 -13.54511 -13.28235 -13.09751 -12.87411 -12.50181 -12.35540 -12.19659 -12.06290 -11.82485 -11.69465 -11.47655 -11.34139 -11.26324 -11.10980 -10.97503 -10.78538 -10.66447 -10.61653 -9.97882 -9.45211 -9.42033 -8.75082 -8.36427 -6.94665 -4.04281 -0.70312 -0.31568 0.29956 0.93495 1.06659 2.44217 2.67442 2.94987 2.98551 3.00470 3.55281 3.67993 3.74486 3.79920 4.13552 4.35148 4.41977 4.51904 4.57425 4.61905 4.68580 4.78864 4.93336 5.25683 5.29130 5.41526 5.53544 5.67968 5.87941 5.91980 6.20762 6.37519 6.74596 6.76006 6.88567 7.61238 8.02258 8.72720 8.94759 9.66065 10.05259 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.013746 B = 0.004153 C = 0.003351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2036.539056 B = 6740.107917 C = 8352.511379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.386 5.386 3 C -0.336 4.336 4 H 0.113 0.887 5 C 0.044 3.956 6 N -0.824 5.824 7 Si 0.938 3.062 8 H -0.266 1.266 9 H -0.279 1.279 10 H -0.264 1.264 11 C 0.426 3.574 12 O -0.586 6.586 13 C -0.093 4.093 14 C -0.004 4.004 15 C -0.022 4.022 16 N -0.016 5.016 17 O -0.174 6.174 18 O -0.161 6.161 19 C 0.027 3.973 20 C -0.668 4.668 21 S 2.506 3.494 22 C -0.649 4.649 23 O -0.924 6.924 24 O -0.930 6.930 25 C 0.058 3.942 26 H 0.063 0.937 27 H 0.091 0.909 28 H 0.031 0.969 29 H 0.286 0.714 30 H 0.172 0.828 31 H 0.169 0.831 32 H 0.136 0.864 33 H 0.135 0.865 34 H 0.134 0.866 35 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.631 -9.588 -8.902 13.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.097 5.097 3 C -0.465 4.465 4 H 0.131 0.869 5 C -0.171 4.171 6 N -0.455 5.455 7 Si 0.762 3.238 8 H -0.190 1.190 9 H -0.204 1.204 10 H -0.189 1.189 11 C 0.218 3.782 12 O -0.474 6.474 13 C -0.099 4.099 14 C -0.025 4.025 15 C -0.108 4.108 16 N 0.464 4.536 17 O -0.367 6.367 18 O -0.357 6.357 19 C 0.006 3.994 20 C -0.753 4.753 21 S 2.683 3.317 22 C -0.799 4.799 23 O -0.921 6.921 24 O -0.928 6.928 25 C 0.038 3.962 26 H 0.081 0.919 27 H 0.109 0.891 28 H 0.050 0.950 29 H 0.098 0.902 30 H 0.189 0.811 31 H 0.186 0.814 32 H 0.155 0.845 33 H 0.154 0.846 34 H 0.153 0.847 35 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -2.143 -9.917 -8.812 13.438 hybrid contribution -0.993 1.501 0.231 1.814 sum -3.136 -8.416 -8.581 12.422 Atomic orbital electron populations 1.22106 0.81360 1.01465 1.01001 1.42554 1.05729 1.05122 1.56344 1.20700 0.99321 0.83001 1.43445 0.86894 1.27081 0.95365 1.00978 0.93713 1.68974 1.15422 1.31813 1.29327 0.85800 0.79635 0.78685 0.79651 1.19044 1.20379 1.18866 1.17252 0.87527 0.81948 0.91480 1.90636 1.12725 1.85358 1.58649 1.20539 0.93692 0.98125 0.97516 1.22012 0.91898 0.94763 0.93784 1.20269 0.87781 0.98865 1.03934 1.50421 1.02101 1.01906 0.99131 1.96260 1.59563 1.09894 1.70987 1.96314 1.71670 1.32336 1.35356 1.20712 0.92185 0.97586 0.88917 1.30771 1.06661 1.17446 1.20434 1.05276 0.75325 0.74004 0.77081 1.30223 1.14723 1.12960 1.22005 1.93638 1.26927 1.85015 1.86551 1.93608 1.80660 1.43318 1.75182 1.21508 0.96109 0.88430 0.90159 0.91855 0.89085 0.95044 0.90155 0.81085 0.81359 0.84530 0.84612 0.84742 0.81654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 45. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.67 7.23 59.85 0.43 2.11 16 2 N -0.39 -8.98 2.93 -121.76 -0.36 -9.33 16 3 C -0.34 -8.37 9.51 -13.45 -0.13 -8.50 16 4 H 0.11 2.96 7.46 -52.48 -0.39 2.57 16 5 C 0.04 1.00 5.24 -15.15 -0.08 0.92 16 6 N -0.82 -18.90 10.64 56.00 0.60 -18.30 16 7 Si 0.94 17.97 29.66 -169.99 -5.04 12.93 16 8 H -0.27 -5.02 7.11 56.52 0.40 -4.61 16 9 H -0.28 -5.18 7.11 56.52 0.40 -4.78 16 10 H -0.26 -5.18 7.11 56.52 0.40 -4.78 16 11 C 0.43 9.74 7.25 -12.40 -0.09 9.65 16 12 O -0.59 -15.49 16.59 5.39 0.09 -15.40 16 13 C -0.09 -1.67 5.17 -104.97 -0.54 -2.21 16 14 C 0.00 -0.06 7.14 -39.16 -0.28 -0.34 16 15 C -0.02 -0.33 6.88 -80.01 -0.55 -0.88 16 16 N -0.02 -0.27 4.98 33.93 0.17 -0.10 16 17 O -0.17 -2.87 19.14 -31.57 -0.60 -3.47 16 18 O -0.16 -2.88 19.14 -31.56 -0.60 -3.49 16 19 C 0.03 0.35 9.00 -39.48 -0.36 -0.01 16 20 C -0.67 -8.13 5.65 -39.64 -0.22 -8.36 16 21 S 2.51 23.72 5.80 -107.50 -0.62 23.10 16 22 C -0.65 -3.14 10.80 101.05 1.09 -2.05 16 23 O -0.92 -11.97 17.12 -57.54 -0.98 -12.96 16 24 O -0.93 -11.20 17.12 -57.54 -0.98 -12.18 16 25 C 0.06 0.87 9.07 -39.16 -0.36 0.51 16 26 H 0.06 1.28 6.68 -51.93 -0.35 0.93 16 27 H 0.09 1.90 6.39 -51.93 -0.33 1.56 16 28 H 0.03 0.53 5.97 -51.93 -0.31 0.22 16 29 H 0.29 6.09 8.26 -40.82 -0.34 5.75 16 30 H 0.17 2.95 5.00 -52.49 -0.26 2.68 16 31 H 0.17 1.83 7.07 -52.48 -0.37 1.46 16 32 H 0.14 0.53 8.14 -51.92 -0.42 0.11 16 33 H 0.14 0.41 8.14 -51.92 -0.42 -0.02 16 34 H 0.13 0.45 8.14 -51.92 -0.42 0.03 16 35 H 0.17 2.34 7.56 -52.49 -0.40 1.95 16 LS Contribution 326.20 15.07 4.92 4.92 Total: -1.00 -33.06 326.20 -7.32 -40.38 By element: Atomic # 1 Polarization: 5.89 SS G_CDS: -2.81 Total: 3.08 kcal Atomic # 6 Polarization: -8.08 SS G_CDS: -1.08 Total: -9.17 kcal Atomic # 7 Polarization: -28.14 SS G_CDS: 0.41 Total: -27.73 kcal Atomic # 8 Polarization: -44.41 SS G_CDS: -3.09 Total: -47.50 kcal Atomic # 14 Polarization: 17.97 SS G_CDS: -5.04 Total: 12.93 kcal Atomic # 16 Polarization: 23.72 SS G_CDS: -0.62 Total: 23.10 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -33.06 -7.32 -40.38 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325423558.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.831 kcal (2) G-P(sol) polarization free energy of solvation -33.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.69 seconds