Wall clock time and date at job start Tue Mar 31 2020 15:03:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.33332 * 120.00099 * 2 1 4 4 H 1.08003 * 120.00573 * 200.67352 * 3 2 1 5 5 C 1.46788 * 119.99840 * 20.66657 * 3 2 1 6 6 N 1.29320 * 120.00025 * 11.66117 * 5 3 2 7 7 Si 1.86801 * 120.00167 * 191.65529 * 5 3 2 8 8 H 1.48498 * 109.46936 * 59.99940 * 7 5 3 9 9 H 1.48498 * 109.47172 * 180.02562 * 7 5 3 10 10 H 1.48506 * 109.46968 * 300.00425 * 7 5 3 11 11 C 1.34776 * 120.00243 * 179.97438 * 2 1 3 12 12 O 1.21478 * 119.99674 * 184.71958 * 11 2 1 13 13 C 1.47696 * 120.00029 * 4.72113 * 11 2 1 14 14 C 1.39687 * 120.14823 * 318.77768 * 13 11 2 15 15 C 1.37914 * 119.83962 * 180.02562 * 14 13 11 16 16 N 1.48020 * 119.91817 * 180.02562 * 15 14 13 17 17 O 1.31703 * 119.99382 * 179.97438 * 16 15 14 18 18 O 1.31695 * 120.00064 * 359.97438 * 16 15 14 19 19 C 1.38397 * 120.15467 * 359.97438 * 15 14 13 20 20 C 1.38360 * 120.30886 * 0.02562 * 19 15 14 21 21 S 1.76200 * 119.92061 * 179.97438 * 20 19 15 22 22 C 1.81404 * 104.44749 * 90.00077 * 21 20 19 23 23 O 1.42101 * 104.27616 * 206.07050 * 21 20 19 24 24 O 1.42095 * 104.27990 * 333.93162 * 21 20 19 25 25 C 1.37944 * 120.15463 * 0.02562 * 20 19 15 26 26 H 1.09007 * 109.47047 * 264.79276 * 1 2 3 27 27 H 1.08992 * 109.47289 * 24.79190 * 1 2 3 28 28 H 1.09000 * 109.46698 * 144.79529 * 1 2 3 29 29 H 0.96993 * 120.00080 * 179.97438 * 6 5 3 30 30 H 1.07998 * 120.08275 * 0.02562 * 14 13 11 31 31 H 1.08003 * 119.84493 * 180.27409 * 19 15 14 32 32 H 1.09007 * 109.47315 * 59.99976 * 22 21 20 33 33 H 1.08999 * 109.47116 * 179.97438 * 22 21 20 34 34 H 1.08999 * 109.47499 * 299.99691 * 22 21 20 35 35 H 1.08001 * 120.07903 * 179.97438 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1316 1.1547 0.0000 4 1 3.1595 1.1849 -0.3302 5 6 1.4685 2.3850 0.4487 6 7 0.3263 2.3209 1.0516 7 14 2.2746 4.0432 0.1488 8 1 2.4596 4.2470 -1.3105 9 1 1.4094 5.1200 0.6938 10 1 3.5962 4.0807 0.8252 11 6 2.1389 -1.1672 0.0005 12 8 3.3506 -1.1688 0.0871 13 6 1.4042 -2.4442 -0.1042 14 6 0.2130 -2.6282 0.6018 15 6 -0.4675 -3.8234 0.4998 16 7 -1.7302 -4.0200 1.2467 17 8 -2.3816 -5.1606 1.1500 18 8 -2.2023 -3.0545 2.0078 19 6 0.0269 -4.8388 -0.3001 20 6 1.2062 -4.6633 -1.0021 21 16 1.8267 -5.9633 -2.0168 22 6 1.0794 -5.6644 -3.6425 23 8 3.2283 -5.7336 -2.0625 24 8 1.2967 -7.1460 -1.4343 25 6 1.8978 -3.4735 -0.9085 26 1 -0.3633 -0.0933 1.0235 27 1 -0.3633 0.9329 -0.4309 28 1 -0.3633 -0.8397 -0.5925 29 1 -0.1117 3.1338 1.3484 30 1 -0.1741 -1.8364 1.2260 31 1 -0.5124 -5.7712 -0.3798 32 1 1.3831 -4.6831 -4.0073 33 1 1.4128 -6.4308 -4.3422 34 1 -0.0066 -5.6994 -3.5553 35 1 2.8184 -3.3380 -1.4567 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001325423558.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:03:13 Heat of formation + Delta-G solvation = -43.883384 kcal Electronic energy + Delta-G solvation = -25757.449724 eV Core-core repulsion = 21660.231172 eV Total energy + Delta-G solvation = -4097.218552 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.065 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.93744 -40.42926 -39.19513 -38.26080 -37.09436 -36.93889 -35.77000 -34.35234 -33.35075 -32.97111 -30.29524 -28.54152 -27.94910 -27.10255 -25.00228 -24.11832 -21.96482 -20.22999 -19.63641 -19.40012 -19.15461 -18.15419 -17.94734 -17.48984 -17.40069 -17.26535 -17.13716 -16.75177 -16.34258 -16.08481 -15.64583 -14.82789 -14.55581 -14.27153 -13.96111 -13.93282 -13.89978 -13.63826 -13.39192 -13.28394 -13.22638 -13.07615 -12.75191 -12.71538 -12.59319 -12.50428 -12.33123 -12.15068 -12.02452 -11.92354 -11.21235 -11.13348 -10.89170 -10.53568 -10.15230 -8.67408 -5.94254 -2.03230 -1.08633 -0.86161 -0.36884 -0.23496 1.21135 1.39731 1.47526 1.48257 1.68812 2.06025 2.16551 2.56527 2.83873 2.86787 2.98585 3.11148 3.22500 3.41930 3.46182 3.62374 3.82899 4.08099 4.14497 4.23987 4.29983 4.33535 4.39430 4.58516 4.72386 4.91386 5.00770 5.07430 5.15026 5.39255 5.79600 6.23275 6.94013 7.19310 7.88103 8.32233 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.013746 B = 0.004153 C = 0.003351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2036.539056 B = 6740.107917 C = 8352.511379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.400 5.400 3 C -0.391 4.391 4 H 0.085 0.915 5 C 0.019 3.981 6 N -0.842 5.842 7 Si 0.999 3.001 8 H -0.260 1.260 9 H -0.263 1.263 10 H -0.274 1.274 11 C 0.422 3.578 12 O -0.632 6.632 13 C -0.112 4.112 14 C 0.001 3.999 15 C -0.030 4.030 16 N -0.014 5.014 17 O -0.139 6.139 18 O -0.213 6.213 19 C 0.054 3.946 20 C -0.653 4.653 21 S 2.512 3.488 22 C -0.618 4.618 23 O -0.963 6.963 24 O -0.954 6.954 25 C 0.066 3.934 26 H 0.054 0.946 27 H 0.079 0.921 28 H 0.059 0.941 29 H 0.294 0.706 30 H 0.160 0.840 31 H 0.201 0.799 32 H 0.154 0.846 33 H 0.166 0.834 34 H 0.162 0.838 35 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.092 -11.863 -11.179 17.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.111 5.111 3 C -0.520 4.520 4 H 0.102 0.898 5 C -0.195 4.195 6 N -0.473 5.473 7 Si 0.820 3.180 8 H -0.184 1.184 9 H -0.187 1.187 10 H -0.199 1.199 11 C 0.214 3.786 12 O -0.523 6.523 13 C -0.117 4.117 14 C -0.019 4.019 15 C -0.117 4.117 16 N 0.465 4.535 17 O -0.344 6.344 18 O -0.396 6.396 19 C 0.034 3.966 20 C -0.734 4.734 21 S 2.690 3.310 22 C -0.773 4.773 23 O -0.961 6.961 24 O -0.951 6.951 25 C 0.046 3.954 26 H 0.072 0.928 27 H 0.098 0.902 28 H 0.077 0.923 29 H 0.106 0.894 30 H 0.178 0.822 31 H 0.218 0.782 32 H 0.172 0.828 33 H 0.184 0.816 34 H 0.181 0.819 35 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -3.647 -12.062 -10.962 16.702 hybrid contribution -0.581 1.761 0.790 2.016 sum -4.228 -10.301 -10.172 15.081 Atomic orbital electron populations 1.22004 0.79714 1.01987 1.00831 1.42675 1.06744 1.04894 1.56772 1.20556 0.99178 0.84792 1.47443 0.89761 1.27772 0.95755 1.03208 0.92724 1.69006 1.16024 1.32954 1.29365 0.84930 0.78350 0.75050 0.79660 1.18402 1.18669 1.19872 1.17923 0.87322 0.83369 0.89977 1.90577 1.14942 1.86622 1.60193 1.20098 0.94633 0.96873 1.00128 1.21782 0.91405 0.95384 0.93354 1.20289 0.87582 0.99078 1.04730 1.50510 1.02248 1.01723 0.99007 1.96230 1.59116 1.09532 1.69472 1.96348 1.72772 1.32863 1.37576 1.21205 0.91705 0.97537 0.86143 1.31313 1.05300 1.16779 1.19992 1.05346 0.74503 0.72486 0.78654 1.30040 1.15834 1.15085 1.16294 1.93598 1.29879 1.85006 1.87596 1.93579 1.80687 1.43658 1.77215 1.21614 0.96187 0.88438 0.89118 0.92764 0.90192 0.92264 0.89412 0.82244 0.78163 0.82765 0.81579 0.81931 0.81149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 4.04 7.23 127.77 0.92 4.96 16 2 N -0.40 -19.63 2.93 -657.44 -1.92 -21.55 16 3 C -0.39 -20.79 9.51 86.70 0.82 -19.97 16 4 H 0.08 4.81 7.46 -2.91 -0.02 4.79 16 5 C 0.02 0.89 5.24 87.30 0.46 1.35 16 6 N -0.84 -39.81 10.64 23.26 0.25 -39.56 16 7 Si 1.00 37.78 29.66 68.60 2.03 39.81 16 8 H -0.26 -9.49 7.11 99.48 0.71 -8.79 16 9 H -0.26 -9.15 7.11 99.48 0.71 -8.45 16 10 H -0.27 -10.68 7.11 99.48 0.71 -9.98 16 11 C 0.42 20.27 7.25 86.74 0.63 20.89 16 12 O -0.63 -35.47 16.59 -3.65 -0.06 -35.53 16 13 C -0.11 -4.08 5.17 -20.09 -0.10 -4.18 16 14 C 0.00 0.04 7.14 22.54 0.16 0.20 16 15 C -0.03 -0.86 6.88 36.34 0.25 -0.61 16 16 N -0.01 -0.43 4.98 -46.55 -0.23 -0.67 16 17 O -0.14 -4.11 19.14 3.51 0.07 -4.05 16 18 O -0.21 -7.69 19.14 3.52 0.07 -7.63 16 19 C 0.05 1.20 9.00 22.34 0.20 1.40 16 20 C -0.65 -13.91 5.65 22.23 0.13 -13.78 16 21 S 2.51 38.33 5.80 -56.49 -0.33 38.01 16 22 C -0.62 -2.13 10.80 113.37 1.22 -0.90 16 23 O -0.96 -22.97 17.12 -127.65 -2.18 -25.15 16 24 O -0.95 -19.35 17.12 -127.65 -2.18 -21.54 16 25 C 0.07 1.90 9.07 22.54 0.20 2.11 16 26 H 0.05 2.31 6.68 -2.38 -0.02 2.30 16 27 H 0.08 3.46 6.39 -2.39 -0.02 3.45 16 28 H 0.06 2.05 5.97 -2.39 -0.01 2.04 16 29 H 0.29 12.67 8.26 -92.71 -0.77 11.90 16 30 H 0.16 5.72 5.00 -2.91 -0.01 5.71 16 31 H 0.20 3.26 7.07 -2.91 -0.02 3.24 16 32 H 0.15 0.24 8.14 -2.39 -0.02 0.22 16 33 H 0.17 -0.16 8.14 -2.39 -0.02 -0.18 16 34 H 0.16 -0.13 8.14 -2.39 -0.02 -0.15 16 35 H 0.17 4.75 7.56 -2.91 -0.02 4.73 16 Total: -1.00 -77.13 326.20 1.57 -75.56 By element: Atomic # 1 Polarization: 9.66 SS G_CDS: 1.17 Total: 10.83 kcal Atomic # 6 Polarization: -13.43 SS G_CDS: 4.90 Total: -8.54 kcal Atomic # 7 Polarization: -59.87 SS G_CDS: -1.91 Total: -61.78 kcal Atomic # 8 Polarization: -89.60 SS G_CDS: -4.30 Total: -93.89 kcal Atomic # 14 Polarization: 37.78 SS G_CDS: 2.03 Total: 39.81 kcal Atomic # 16 Polarization: 38.33 SS G_CDS: -0.33 Total: 38.01 kcal Total: -77.13 1.57 -75.56 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325423558.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.674 kcal (2) G-P(sol) polarization free energy of solvation -77.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds