Wall clock time and date at job start Tue Mar 31 2020 15:10:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86797 * 119.99833 * 2 1 4 4 H 1.48505 * 109.47026 * 269.99572 * 3 2 1 5 5 H 1.48495 * 109.47427 * 29.99116 * 3 2 1 6 6 H 1.48498 * 109.47632 * 149.99772 * 3 2 1 7 7 C 1.37881 * 120.00318 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99473 * 0.02562 * 7 2 1 9 9 C 1.50697 * 120.00013 * 180.02562 * 7 2 1 10 10 O 1.42898 * 109.46931 * 180.02562 * 9 7 2 11 11 C 1.42902 * 114.00061 * 180.02562 * 10 9 7 12 12 C 1.52996 * 109.47203 * 179.97438 * 11 10 9 13 13 O 1.45200 * 109.47187 * 64.99605 * 12 11 10 14 14 C 1.34678 * 116.99809 * 179.97438 * 13 12 11 15 15 O 1.21408 * 120.00047 * 0.02562 * 14 13 12 16 16 C 1.48161 * 119.99548 * 179.97438 * 14 13 12 17 17 N 1.32804 * 119.59128 * 0.02562 * 16 14 13 18 18 C 1.31341 * 121.81422 * 179.97438 * 17 16 14 19 19 C 1.39814 * 120.76483 * 0.02562 * 18 17 16 20 20 C 1.48021 * 120.45170 * 179.97438 * 19 18 17 21 21 N 1.34777 * 119.99535 * 359.97438 * 20 19 18 22 22 O 1.21523 * 120.00156 * 180.02562 * 20 19 18 23 23 C 1.39764 * 119.10244 * 0.23686 * 19 18 17 24 24 C 1.38687 * 118.34291 * 359.47668 * 23 19 18 25 25 Cl 1.73595 * 120.42439 * 180.26159 * 24 23 19 26 26 H 0.96995 * 120.00363 * 0.02562 * 1 2 3 27 27 H 1.08998 * 109.47220 * 60.00219 * 9 7 2 28 28 H 1.08997 * 109.47112 * 300.00285 * 9 7 2 29 29 H 1.08998 * 109.47219 * 59.99255 * 11 10 9 30 30 H 1.09001 * 109.46891 * 299.99661 * 11 10 9 31 31 H 1.08999 * 109.47222 * 304.99540 * 12 11 10 32 32 H 1.09005 * 109.47228 * 184.99883 * 12 11 10 33 33 H 1.07997 * 119.61855 * 179.97438 * 18 17 16 34 34 H 0.97001 * 120.00485 * 0.02562 * 21 20 19 35 35 H 0.97005 * 119.99790 * 179.72347 * 21 20 19 36 36 H 1.07994 * 120.83020 * 179.74541 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.6998 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1940 0.0011 10 8 3.9880 -2.5412 0.0010 11 6 5.4125 -2.6540 0.0021 12 6 5.8071 -4.1322 0.0025 13 8 5.3738 -4.7492 -1.2384 14 6 5.6466 -6.0583 -1.3982 15 8 6.2299 -6.6678 -0.5251 16 6 5.2340 -6.7549 -2.6391 17 7 4.5960 -6.0803 -3.5886 18 6 4.2108 -6.6539 -4.7056 19 6 4.4613 -8.0099 -4.9367 20 6 4.0236 -8.6493 -6.1978 21 7 3.3785 -7.9238 -7.1327 22 8 4.2451 -9.8286 -6.3899 23 6 5.1256 -8.7548 -3.9583 24 6 5.5210 -8.1104 -2.7956 25 17 6.3558 -8.9820 -1.5479 26 1 -0.4850 0.8400 -0.0004 27 1 3.8746 -0.6800 0.8911 28 1 3.8752 -0.6803 -0.8888 29 1 5.8146 -2.1707 0.8925 30 1 5.8160 -2.1702 -0.8874 31 1 5.3307 -4.6352 0.8440 32 1 6.8899 -4.2193 0.0929 33 1 3.6940 -6.0715 -5.4540 34 1 3.2013 -6.9825 -6.9792 35 1 3.0952 -8.3419 -7.9609 36 1 5.3298 -9.8049 -4.1059 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327816273.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:10:46 Heat of formation + Delta-G solvation = -120.459594 kcal Electronic energy + Delta-G solvation = -24243.592091 eV Core-core repulsion = 20141.009240 eV Total energy + Delta-G solvation = -4102.582852 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.070 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.43808 -40.27213 -39.21873 -37.30967 -37.00926 -36.15630 -34.48528 -33.26490 -32.69572 -31.86163 -30.31473 -27.68015 -26.43280 -24.33532 -23.09123 -21.96446 -21.79703 -21.17904 -18.98660 -18.57653 -17.75242 -17.20652 -16.88694 -16.66319 -16.45694 -15.99095 -15.70471 -15.34405 -14.99969 -14.84612 -14.49501 -14.32410 -14.09692 -13.77147 -13.32242 -13.03010 -12.56289 -12.47272 -12.46704 -11.94584 -11.72514 -11.16871 -11.07597 -10.86874 -10.69320 -10.57455 -10.53031 -10.48394 -10.31145 -9.92388 -9.88342 -9.63386 -9.21138 -8.91236 -8.51269 -6.12721 -4.11871 -0.48762 0.38681 1.48722 1.77406 2.29656 2.49636 2.78742 3.19682 3.23391 3.30438 3.31221 3.54120 3.97375 4.11267 4.13324 4.33697 4.33885 4.43922 4.51008 5.04564 5.09555 5.18360 5.20211 5.34999 5.52722 5.66926 5.76153 5.91838 6.15951 6.32370 6.55137 6.65245 6.96175 6.97308 7.56789 7.57880 7.61707 7.95127 8.62922 8.99041 9.46069 11.00329 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.013066 B = 0.002781 C = 0.002380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2142.403438 B =10066.048052 C =11759.969130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.072 3.928 3 Si 0.876 3.124 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.266 1.266 7 C -0.519 4.519 8 H 0.083 0.917 9 C 0.169 3.831 10 O -0.374 6.374 11 C 0.058 3.942 12 C 0.072 3.928 13 O -0.313 6.313 14 C 0.512 3.488 15 O -0.478 6.478 16 C 0.134 3.866 17 N -0.411 5.411 18 C 0.137 3.863 19 C -0.157 4.157 20 C 0.572 3.428 21 N -0.843 5.843 22 O -0.529 6.529 23 C -0.015 4.015 24 C -0.045 4.045 25 Cl -0.002 7.002 26 H 0.266 0.734 27 H 0.004 0.996 28 H 0.001 0.999 29 H 0.066 0.934 30 H 0.053 0.947 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.177 0.823 34 H 0.405 0.595 35 H 0.411 0.589 36 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.009 -15.951 -12.172 23.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.130 4.130 3 Si 0.703 3.297 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.191 1.191 7 C -0.556 4.556 8 H 0.101 0.899 9 C 0.094 3.906 10 O -0.294 6.294 11 C -0.020 4.020 12 C -0.001 4.001 13 O -0.228 6.228 14 C 0.354 3.646 15 O -0.365 6.365 16 C -0.003 4.003 17 N -0.121 5.121 18 C -0.025 4.025 19 C -0.162 4.162 20 C 0.356 3.644 21 N -0.408 5.408 22 O -0.405 6.405 23 C -0.042 4.042 24 C -0.075 4.075 25 Cl 0.028 6.972 26 H 0.076 0.924 27 H 0.021 0.979 28 H 0.019 0.981 29 H 0.084 0.916 30 H 0.071 0.929 31 H 0.100 0.900 32 H 0.101 0.899 33 H 0.194 0.806 34 H 0.235 0.765 35 H 0.243 0.757 36 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 13.036 -16.069 -11.528 23.687 hybrid contribution 0.522 0.626 -0.236 0.849 sum 13.558 -15.443 -11.763 23.679 Atomic orbital electron populations 1.69873 1.06061 1.27093 1.50335 1.24767 0.94809 0.98735 0.94653 0.86847 0.80324 0.83752 0.78786 1.19889 1.20800 1.19106 1.20880 0.88210 0.95364 1.51191 0.89925 1.20628 0.96314 0.79251 0.94449 1.87987 1.16557 1.29741 1.95078 1.22390 0.86249 0.92588 1.00727 1.23316 0.99351 0.93340 0.84114 1.86753 1.72521 1.22228 1.41256 1.20495 0.76942 0.81936 0.85271 1.90936 1.37407 1.66821 1.41326 1.20245 0.97228 0.89138 0.93697 1.67935 1.06854 1.37144 1.00152 1.23227 0.94302 0.90842 0.94147 1.21211 1.02713 0.95724 0.96584 1.17848 0.77513 0.86023 0.82995 1.43707 1.60801 1.14933 1.21337 1.90860 1.55491 1.15281 1.78905 1.21674 0.91743 1.01716 0.89071 1.21901 0.99714 0.92493 0.93418 1.98458 1.74662 1.74394 1.49692 0.92352 0.97863 0.98139 0.91648 0.92903 0.89965 0.89945 0.80582 0.76464 0.75657 0.81338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.45 13.96 55.43 0.77 -26.67 16 2 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 3 Si 0.88 21.10 27.47 -169.99 -4.67 16.43 16 4 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.27 -6.10 6.54 56.52 0.37 -5.73 16 7 C -0.52 -15.37 9.99 -34.44 -0.34 -15.72 16 8 H 0.08 2.69 8.06 -52.48 -0.42 2.27 16 9 C 0.17 4.24 4.76 36.00 0.17 4.41 16 10 O -0.37 -8.68 10.30 -38.80 -0.40 -9.08 16 11 C 0.06 0.98 6.33 37.16 0.24 1.21 16 12 C 0.07 1.07 5.85 37.16 0.22 1.29 16 13 O -0.31 -5.20 10.00 -43.22 -0.43 -5.63 16 14 C 0.51 7.71 7.95 34.81 0.28 7.99 16 15 O -0.48 -7.37 13.70 -19.19 -0.26 -7.63 16 16 C 0.13 1.75 6.75 -82.92 -0.56 1.19 16 17 N -0.41 -5.11 10.10 -9.47 -0.10 -5.20 16 18 C 0.14 1.14 10.71 -17.17 -0.18 0.96 16 19 C -0.16 -1.29 5.90 -104.73 -0.62 -1.91 16 20 C 0.57 4.51 8.06 -12.25 -0.10 4.41 16 21 N -0.84 -3.30 8.83 30.57 0.27 -3.03 16 22 O -0.53 -6.07 17.25 5.35 0.09 -5.97 16 23 C -0.02 -0.14 9.51 -38.85 -0.37 -0.51 16 24 C -0.05 -0.50 6.37 -38.97 -0.25 -0.75 16 25 Cl 0.00 -0.02 26.00 -51.86 -1.35 -1.37 16 26 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 27 H 0.00 0.09 7.20 -51.93 -0.37 -0.28 16 28 H 0.00 0.02 7.57 -51.93 -0.39 -0.37 16 29 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 31 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 32 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.18 0.76 6.41 -52.49 -0.34 0.43 16 34 H 0.41 0.59 6.89 -40.82 -0.28 0.31 16 35 H 0.41 1.10 8.93 -40.82 -0.36 0.74 16 36 H 0.17 1.31 7.72 -52.49 -0.41 0.91 16 LS Contribution 339.64 15.07 5.12 5.12 Total: -1.00 -36.94 339.64 -6.01 -42.95 By element: Atomic # 1 Polarization: -1.06 SS G_CDS: -3.43 Total: -4.49 kcal Atomic # 6 Polarization: 6.21 SS G_CDS: -1.62 Total: 4.59 kcal Atomic # 7 Polarization: -35.85 SS G_CDS: 0.95 Total: -34.90 kcal Atomic # 8 Polarization: -27.32 SS G_CDS: -1.00 Total: -28.32 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -4.67 Total: 16.43 kcal Atomic # 17 Polarization: -0.02 SS G_CDS: -1.35 Total: -1.37 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -36.94 -6.01 -42.95 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327816273.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.514 kcal (2) G-P(sol) polarization free energy of solvation -36.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds