Wall clock time and date at job start Tue Mar 31 2020 15:10:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86797 * 119.99833 * 2 1 4 4 H 1.48505 * 109.47026 * 269.99572 * 3 2 1 5 5 H 1.48495 * 109.47427 * 29.99116 * 3 2 1 6 6 H 1.48498 * 109.47632 * 149.99772 * 3 2 1 7 7 C 1.37881 * 120.00318 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99473 * 0.02562 * 7 2 1 9 9 C 1.50697 * 120.00013 * 180.02562 * 7 2 1 10 10 O 1.42898 * 109.46931 * 180.02562 * 9 7 2 11 11 C 1.42902 * 114.00061 * 180.02562 * 10 9 7 12 12 C 1.52996 * 109.47203 * 179.97438 * 11 10 9 13 13 O 1.45200 * 109.47187 * 64.99605 * 12 11 10 14 14 C 1.34678 * 116.99809 * 179.97438 * 13 12 11 15 15 O 1.21408 * 120.00047 * 0.02562 * 14 13 12 16 16 C 1.48161 * 119.99548 * 179.97438 * 14 13 12 17 17 N 1.32804 * 119.59128 * 0.02562 * 16 14 13 18 18 C 1.31341 * 121.81422 * 179.97438 * 17 16 14 19 19 C 1.39814 * 120.76483 * 0.02562 * 18 17 16 20 20 C 1.48021 * 120.45170 * 179.97438 * 19 18 17 21 21 N 1.34777 * 119.99535 * 359.97438 * 20 19 18 22 22 O 1.21523 * 120.00156 * 180.02562 * 20 19 18 23 23 C 1.39764 * 119.10244 * 0.23686 * 19 18 17 24 24 C 1.38687 * 118.34291 * 359.47668 * 23 19 18 25 25 Cl 1.73595 * 120.42439 * 180.26159 * 24 23 19 26 26 H 0.96995 * 120.00363 * 0.02562 * 1 2 3 27 27 H 1.08998 * 109.47220 * 60.00219 * 9 7 2 28 28 H 1.08997 * 109.47112 * 300.00285 * 9 7 2 29 29 H 1.08998 * 109.47219 * 59.99255 * 11 10 9 30 30 H 1.09001 * 109.46891 * 299.99661 * 11 10 9 31 31 H 1.08999 * 109.47222 * 304.99540 * 12 11 10 32 32 H 1.09005 * 109.47228 * 184.99883 * 12 11 10 33 33 H 1.07997 * 119.61855 * 179.97438 * 18 17 16 34 34 H 0.97001 * 120.00485 * 0.02562 * 21 20 19 35 35 H 0.97005 * 119.99790 * 179.72347 * 21 20 19 36 36 H 1.07994 * 120.83020 * 179.74541 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.6998 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1940 0.0011 10 8 3.9880 -2.5412 0.0010 11 6 5.4125 -2.6540 0.0021 12 6 5.8071 -4.1322 0.0025 13 8 5.3738 -4.7492 -1.2384 14 6 5.6466 -6.0583 -1.3982 15 8 6.2299 -6.6678 -0.5251 16 6 5.2340 -6.7549 -2.6391 17 7 4.5960 -6.0803 -3.5886 18 6 4.2108 -6.6539 -4.7056 19 6 4.4613 -8.0099 -4.9367 20 6 4.0236 -8.6493 -6.1978 21 7 3.3785 -7.9238 -7.1327 22 8 4.2451 -9.8286 -6.3899 23 6 5.1256 -8.7548 -3.9583 24 6 5.5210 -8.1104 -2.7956 25 17 6.3558 -8.9820 -1.5479 26 1 -0.4850 0.8400 -0.0004 27 1 3.8746 -0.6800 0.8911 28 1 3.8752 -0.6803 -0.8888 29 1 5.8146 -2.1707 0.8925 30 1 5.8160 -2.1702 -0.8874 31 1 5.3307 -4.6352 0.8440 32 1 6.8899 -4.2193 0.0929 33 1 3.6940 -6.0715 -5.4540 34 1 3.2013 -6.9825 -6.9792 35 1 3.0952 -8.3419 -7.9609 36 1 5.3298 -9.8049 -4.1059 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327816273.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:10:45 Heat of formation + Delta-G solvation = -149.879315 kcal Electronic energy + Delta-G solvation = -24244.867826 eV Core-core repulsion = 20141.009240 eV Total energy + Delta-G solvation = -4103.858586 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.070 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.29678 -41.26284 -40.00633 -38.79522 -37.97006 -37.43440 -35.07818 -34.87418 -34.04234 -32.69398 -31.74807 -29.60118 -27.34448 -25.10575 -24.25059 -23.91260 -22.89227 -22.02495 -19.81094 -19.34414 -19.09939 -18.51574 -18.08827 -17.98629 -17.26712 -17.13429 -16.76011 -16.48330 -16.31597 -16.18392 -15.72977 -15.28880 -15.06215 -14.73432 -14.58253 -14.36640 -14.22462 -13.85564 -13.34597 -13.32488 -13.00198 -12.94145 -12.57497 -12.26720 -11.85508 -11.83444 -11.72895 -11.53173 -11.33519 -11.27654 -10.91808 -10.81634 -10.80442 -10.45449 -10.38021 -8.35121 -6.43429 -1.32229 -0.37063 0.64390 0.86206 1.27114 1.36217 1.39661 1.50317 1.67629 2.20692 2.31905 2.39814 2.73339 2.97187 2.98359 3.17404 3.34849 3.44493 3.62158 3.72421 3.92317 4.13712 4.27117 4.39460 4.49510 4.52747 4.59524 4.70434 4.84252 5.02088 5.17356 5.44853 5.75089 5.93224 6.13101 6.23304 6.52456 6.60477 6.73585 7.10547 7.20751 8.82200 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.013066 B = 0.002781 C = 0.002380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2142.403438 B =10066.048052 C =11759.969130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C 0.012 3.988 3 Si 0.958 3.042 4 H -0.258 1.258 5 H -0.275 1.275 6 H -0.241 1.241 7 C -0.547 4.547 8 H 0.026 0.974 9 C 0.179 3.821 10 O -0.407 6.407 11 C 0.051 3.949 12 C 0.071 3.929 13 O -0.335 6.335 14 C 0.509 3.491 15 O -0.490 6.490 16 C 0.111 3.889 17 N -0.442 5.442 18 C 0.146 3.854 19 C -0.144 4.144 20 C 0.575 3.425 21 N -0.819 5.819 22 O -0.567 6.567 23 C -0.012 4.012 24 C -0.045 4.045 25 Cl -0.008 7.008 26 H 0.273 0.727 27 H 0.019 0.981 28 H 0.015 0.985 29 H 0.094 0.906 30 H 0.066 0.934 31 H 0.073 0.927 32 H 0.117 0.883 33 H 0.217 0.783 34 H 0.420 0.580 35 H 0.421 0.579 36 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.567 -14.610 -13.518 24.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.186 4.186 3 Si 0.779 3.221 4 H -0.183 1.183 5 H -0.201 1.201 6 H -0.165 1.165 7 C -0.585 4.585 8 H 0.045 0.955 9 C 0.103 3.897 10 O -0.327 6.327 11 C -0.026 4.026 12 C -0.002 4.002 13 O -0.250 6.250 14 C 0.351 3.649 15 O -0.377 6.377 16 C -0.025 4.025 17 N -0.152 5.152 18 C -0.016 4.016 19 C -0.149 4.149 20 C 0.359 3.641 21 N -0.384 5.384 22 O -0.447 6.447 23 C -0.039 4.039 24 C -0.075 4.075 25 Cl 0.022 6.978 26 H 0.082 0.918 27 H 0.036 0.964 28 H 0.033 0.967 29 H 0.112 0.888 30 H 0.084 0.916 31 H 0.092 0.908 32 H 0.135 0.865 33 H 0.233 0.767 34 H 0.253 0.747 35 H 0.255 0.745 36 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 14.597 -14.721 -12.889 24.411 hybrid contribution -0.048 0.086 0.091 0.134 sum 14.548 -14.635 -12.798 24.282 Atomic orbital electron populations 1.70038 1.08362 1.28807 1.51090 1.25876 0.95819 1.03511 0.93387 0.85577 0.79515 0.77182 0.79867 1.18280 1.20060 1.16470 1.21173 0.91123 0.93755 1.52440 0.95517 1.20354 0.93214 0.80631 0.95458 1.87930 1.20715 1.28689 1.95378 1.22759 0.82832 0.94296 1.02699 1.23407 1.01223 0.92065 0.83483 1.86734 1.73135 1.23241 1.41914 1.20877 0.76587 0.81423 0.85978 1.90910 1.38053 1.66784 1.41969 1.20091 0.99060 0.89732 0.93615 1.67904 1.07886 1.38152 1.01299 1.23833 0.93114 0.91132 0.93521 1.21329 1.01503 0.95601 0.96513 1.17749 0.77657 0.85574 0.83151 1.43565 1.58716 1.15476 1.20674 1.90857 1.57372 1.16888 1.79582 1.21856 0.91225 1.02325 0.88470 1.21891 0.99918 0.91857 0.93848 1.98451 1.74848 1.74347 1.50198 0.91805 0.96367 0.96749 0.88796 0.91574 0.90830 0.86492 0.76658 0.74739 0.74492 0.80132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.17 13.96 21.45 0.30 -58.87 16 2 C 0.01 0.70 5.47 84.66 0.46 1.16 16 3 Si 0.96 42.46 27.47 68.60 1.88 44.34 16 4 H -0.26 -10.80 7.11 99.48 0.71 -10.09 16 5 H -0.28 -11.82 7.11 99.48 0.71 -11.12 16 6 H -0.24 -9.68 6.54 99.48 0.65 -9.03 16 7 C -0.55 -33.33 9.99 25.60 0.26 -33.08 16 8 H 0.03 1.85 8.06 -2.91 -0.02 1.82 16 9 C 0.18 8.82 4.76 71.24 0.34 9.16 16 10 O -0.41 -18.88 10.30 -145.57 -1.50 -20.38 16 11 C 0.05 1.62 6.33 71.98 0.46 2.07 16 12 C 0.07 2.06 5.85 71.98 0.42 2.48 16 13 O -0.34 -11.19 10.00 -53.21 -0.53 -11.72 16 14 C 0.51 15.55 7.95 70.46 0.56 16.11 16 15 O -0.49 -15.26 13.70 20.13 0.28 -14.99 16 16 C 0.11 2.92 6.75 41.92 0.28 3.20 16 17 N -0.44 -10.75 10.10 -183.89 -1.86 -12.61 16 18 C 0.15 2.18 10.71 85.15 0.91 3.09 16 19 C -0.14 -2.13 5.90 -19.93 -0.12 -2.25 16 20 C 0.58 7.91 8.06 86.84 0.70 8.61 16 21 N -0.82 -4.12 8.83 -175.49 -1.55 -5.67 16 22 O -0.57 -12.29 17.25 -3.79 -0.07 -12.36 16 23 C -0.01 -0.21 9.51 22.75 0.22 0.01 16 24 C -0.05 -0.99 6.37 22.67 0.14 -0.84 16 25 Cl -0.01 -0.18 26.00 -2.72 -0.07 -0.25 16 26 H 0.27 15.65 8.31 -92.71 -0.77 14.88 16 27 H 0.02 0.85 7.20 -2.39 -0.02 0.84 16 28 H 0.01 0.68 7.57 -2.39 -0.02 0.66 16 29 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16 30 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 31 H 0.07 2.22 8.14 -2.39 -0.02 2.21 16 32 H 0.12 2.54 8.14 -2.38 -0.02 2.52 16 33 H 0.22 1.18 6.41 -2.91 -0.02 1.17 16 34 H 0.42 -0.23 6.89 -92.71 -0.64 -0.87 16 35 H 0.42 1.11 8.93 -92.70 -0.83 0.28 16 36 H 0.18 2.67 7.72 -2.91 -0.02 2.64 16 Total: -1.00 -83.66 339.64 1.17 -82.49 By element: Atomic # 1 Polarization: 0.64 SS G_CDS: -0.35 Total: 0.29 kcal Atomic # 6 Polarization: 5.10 SS G_CDS: 4.63 Total: 9.73 kcal Atomic # 7 Polarization: -74.05 SS G_CDS: -3.11 Total: -77.16 kcal Atomic # 8 Polarization: -57.63 SS G_CDS: -1.82 Total: -59.45 kcal Atomic # 14 Polarization: 42.46 SS G_CDS: 1.88 Total: 44.34 kcal Atomic # 17 Polarization: -0.18 SS G_CDS: -0.07 Total: -0.25 kcal Total: -83.66 1.17 -82.49 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327816273.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.386 kcal (2) G-P(sol) polarization free energy of solvation -83.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds