Wall clock time and date at job start Tue Mar 31 2020 15:44:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31550 * 1 3 3 Si 1.86797 * 120.00366 * 2 1 4 4 H 1.48499 * 109.47066 * 239.99813 * 3 2 1 5 5 H 1.48506 * 109.46621 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47387 * 119.99740 * 3 2 1 7 7 C 1.38658 * 119.99709 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99815 * 180.02562 * 7 2 1 9 9 O 1.34806 * 119.99786 * 0.02562 * 7 2 1 10 10 C 1.35610 * 116.99560 * 185.06385 * 9 7 2 11 11 C 1.38755 * 120.15160 * 354.40406 * 10 9 7 12 12 C 1.38103 * 120.06797 * 180.02562 * 11 10 9 13 13 C 1.38507 * 120.38412 * 0.02562 * 12 11 10 14 14 C 1.37922 * 120.29941 * 0.02562 * 13 12 11 15 15 C 1.39558 * 119.92065 * 359.97438 * 14 13 12 16 16 C 1.47667 * 120.18320 * 180.02562 * 15 14 13 17 17 N 1.31321 * 126.38793 * 180.02562 * 16 15 14 18 18 N 1.28665 * 109.24391 * 179.97438 * 17 16 15 19 19 C 1.30377 * 109.53767 * 0.02562 * 18 17 16 20 20 C 1.50698 * 126.17662 * 179.97438 * 19 18 17 21 21 C 1.50703 * 109.47343 * 90.01875 * 20 19 18 22 22 C 1.33385 * 125.19895 * 89.72004 * 21 20 19 23 23 C 1.38424 * 114.91945 * 179.85848 * 22 21 20 24 24 C 1.33388 * 114.92043 * 0.43227 * 23 22 21 25 25 S 1.75880 * 125.20501 * 270.02568 * 21 20 19 26 26 O 1.34449 * 107.64362 * 359.75612 * 19 18 17 27 27 H 0.97000 * 119.99769 * 0.02562 * 1 2 3 28 28 H 1.07995 * 119.96797 * 0.03906 * 11 10 9 29 29 H 1.08006 * 119.80823 * 180.26910 * 12 11 10 30 30 H 1.07994 * 119.85347 * 179.97438 * 13 12 11 31 31 H 1.07994 * 120.03462 * 179.97438 * 14 13 12 32 32 H 1.08999 * 109.47289 * 210.02091 * 20 19 18 33 33 H 1.09008 * 109.47342 * 330.01829 * 20 19 18 34 34 H 1.08006 * 122.54211 * 0.02562 * 22 21 20 35 35 H 1.08000 * 122.54126 * 180.19740 * 23 22 21 36 36 H 1.08002 * 125.20203 * 179.79107 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6176 0.0000 4 1 3.1034 1.6962 -1.2125 5 1 1.2845 2.7464 -0.0006 6 1 3.1033 1.6963 1.2125 7 6 2.0087 -1.2008 0.0005 8 1 3.0887 -1.2009 0.0010 9 8 1.3346 -2.3682 0.0005 10 6 2.0690 -3.5032 0.1077 11 6 3.4551 -3.4403 0.0944 12 6 4.2013 -4.5972 0.2031 13 6 3.5745 -5.8263 0.3255 14 6 2.1977 -5.9069 0.3395 15 6 1.4313 -4.7457 0.2304 16 6 -0.0432 -4.8253 0.2453 17 7 -0.8788 -3.8166 0.1509 18 7 -2.0857 -4.2598 0.1994 19 6 -2.0690 -5.5573 0.3261 20 6 -3.2739 -6.4576 0.4198 21 6 -3.6820 -6.8962 -0.9630 22 6 -3.2316 -7.9848 -1.5885 23 6 -3.7521 -8.1869 -2.8552 24 6 -4.6183 -7.2576 -3.2618 25 16 -4.8192 -6.0471 -2.0017 26 8 -0.7826 -5.9476 0.3532 27 1 -0.4850 0.8401 -0.0004 28 1 3.9509 -2.4856 -0.0009 29 1 5.2800 -4.5429 0.1966 30 1 4.1665 -6.7256 0.4096 31 1 1.7135 -6.8675 0.4347 32 1 -3.0275 -7.3329 1.0208 33 1 -4.0966 -5.9161 0.8869 34 1 -2.5171 -8.6590 -1.1397 35 1 -3.4748 -9.0310 -3.4693 36 1 -5.1197 -7.2499 -4.2183 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328404577.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:44:46 Heat of formation + Delta-G solvation = 80.968375 kcal Electronic energy + Delta-G solvation = -24105.570942 eV Core-core repulsion = 20456.908383 eV Total energy + Delta-G solvation = -3648.662559 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.067 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.35607 -39.14704 -38.02910 -36.55158 -35.36998 -33.64163 -32.45430 -31.42686 -29.38849 -28.64404 -26.64408 -25.52082 -23.72281 -23.39781 -22.21465 -21.16422 -20.92450 -19.31591 -18.11304 -17.63007 -17.38461 -16.60001 -16.22624 -15.57666 -15.30767 -14.90348 -14.66534 -14.27713 -13.88285 -13.77554 -13.54616 -13.18484 -13.07513 -12.75893 -12.63927 -12.57846 -11.78947 -11.75842 -11.62864 -11.52848 -11.21655 -10.96862 -10.94017 -10.87089 -10.78795 -10.52765 -10.06676 -9.59240 -9.53606 -8.92551 -8.83781 -8.52332 -8.04848 -7.29780 -6.50406 -4.09708 0.81204 1.24103 1.54482 1.93195 2.21144 2.30930 2.56557 2.89793 3.08963 3.11006 3.13845 3.32384 3.87767 4.38599 4.43976 4.60411 4.82270 4.95589 4.96799 5.07818 5.19839 5.26861 5.43531 5.44765 5.52329 5.66462 5.84659 5.91172 6.00799 6.09038 6.12549 6.19478 6.28368 6.35682 6.50423 6.57243 6.90611 7.01267 7.16060 7.22460 7.57469 7.85560 8.87196 9.12658 9.53967 10.61372 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.012714 B = 0.003615 C = 0.003001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2201.708635 B = 7744.010217 C = 9327.943485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.820 5.820 2 C 0.047 3.953 3 Si 0.941 3.059 4 H -0.268 1.268 5 H -0.276 1.276 6 H -0.268 1.268 7 C -0.402 4.402 8 H 0.096 0.904 9 O -0.120 6.120 10 C 0.180 3.820 11 C -0.231 4.231 12 C -0.049 4.049 13 C -0.225 4.225 14 C -0.032 4.032 15 C -0.129 4.129 16 C 0.233 3.767 17 N -0.243 5.243 18 N -0.268 5.268 19 C 0.115 3.885 20 C 0.061 3.939 21 C -0.185 4.185 22 C -0.126 4.126 23 C -0.138 4.138 24 C -0.217 4.217 25 S 0.131 5.869 26 O -0.233 6.233 27 H 0.274 0.726 28 H 0.136 0.864 29 H 0.114 0.886 30 H 0.114 0.886 31 H 0.118 0.882 32 H 0.110 0.890 33 H 0.117 0.883 34 H 0.141 0.859 35 H 0.139 0.861 36 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.315 -14.533 -1.798 15.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C -0.163 4.163 3 Si 0.765 3.235 4 H -0.193 1.193 5 H -0.201 1.201 6 H -0.193 1.193 7 C -0.477 4.477 8 H 0.113 0.887 9 O -0.017 6.017 10 C 0.119 3.881 11 C -0.250 4.250 12 C -0.068 4.068 13 C -0.244 4.244 14 C -0.052 4.052 15 C -0.133 4.133 16 C 0.029 3.971 17 N -0.091 5.091 18 N -0.116 5.116 19 C -0.095 4.095 20 C 0.020 3.980 21 C -0.303 4.303 22 C -0.157 4.157 23 C -0.169 4.169 24 C -0.353 4.353 25 S 0.396 5.604 26 O -0.114 6.114 27 H 0.084 0.916 28 H 0.154 0.846 29 H 0.132 0.868 30 H 0.132 0.868 31 H 0.136 0.864 32 H 0.128 0.872 33 H 0.135 0.865 34 H 0.159 0.841 35 H 0.157 0.843 36 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -6.160 -11.697 -1.819 13.345 hybrid contribution 1.851 -1.702 -0.187 2.521 sum -4.310 -13.399 -2.005 14.217 Atomic orbital electron populations 1.70137 1.05872 1.28104 1.40904 1.25406 0.95856 0.98968 0.96062 0.85786 0.78830 0.79571 0.79305 1.19318 1.20079 1.19307 1.21465 0.91968 0.80829 1.53462 0.88685 1.84148 1.33721 1.11098 1.72723 1.19062 0.90054 0.86829 0.92131 1.21088 0.92791 0.99545 1.11577 1.20949 0.98876 0.92194 0.94808 1.20456 0.93591 0.97378 1.12978 1.20707 0.93803 0.95524 0.95142 1.16203 0.82704 0.92897 1.21500 1.25593 0.95081 0.78298 0.98173 1.75358 0.93418 1.23066 1.17219 1.74456 1.16240 1.06583 1.14364 1.27288 0.83759 0.93253 1.05225 1.18291 0.89973 0.97395 0.92303 1.24207 1.05192 1.00322 1.00616 1.20169 1.01933 0.98429 0.95210 1.20129 0.99138 1.01011 0.96601 1.25730 1.06175 0.99418 1.03932 1.84530 1.42115 1.26363 1.07420 1.84727 1.17839 1.37786 1.71070 0.91582 0.84639 0.86810 0.86821 0.86406 0.87161 0.86516 0.84122 0.84284 0.81870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -23.96 13.67 55.48 0.76 -23.20 16 2 C 0.05 1.25 5.49 -17.52 -0.10 1.16 16 3 Si 0.94 19.95 29.55 -169.99 -5.02 14.92 16 4 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 5 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 6 H -0.27 -5.49 7.11 56.52 0.40 -5.08 16 7 C -0.40 -10.94 9.49 30.89 0.29 -10.65 16 8 H 0.10 2.33 5.21 -52.49 -0.27 2.06 16 9 O -0.12 -3.40 8.10 0.55 0.00 -3.39 16 10 C 0.18 4.35 6.66 -38.65 -0.26 4.09 16 11 C -0.23 -4.78 9.16 -39.44 -0.36 -5.14 16 12 C -0.05 -0.84 10.03 -39.53 -0.40 -1.24 16 13 C -0.22 -3.67 10.03 -39.60 -0.40 -4.07 16 14 C -0.03 -0.58 9.72 -39.20 -0.38 -0.96 16 15 C -0.13 -2.87 5.89 -104.82 -0.62 -3.49 16 16 C 0.23 5.41 7.97 -13.92 -0.11 5.29 16 17 N -0.24 -6.35 10.77 32.05 0.34 -6.01 16 18 N -0.27 -6.14 12.22 32.58 0.40 -5.74 16 19 C 0.12 2.13 7.71 -12.90 -0.10 2.03 16 20 C 0.06 0.76 6.34 -29.03 -0.18 0.58 16 21 C -0.18 -2.34 5.75 -36.00 -0.21 -2.55 16 22 C -0.13 -1.46 10.05 -41.21 -0.41 -1.87 16 23 C -0.14 -1.46 10.18 -41.21 -0.42 -1.88 16 24 C -0.22 -2.30 11.23 29.04 0.33 -1.97 16 25 S 0.13 1.62 23.33 -107.50 -2.51 -0.88 16 26 O -0.23 -4.60 10.67 3.84 0.04 -4.55 16 27 H 0.27 7.36 8.31 -40.82 -0.34 7.03 16 28 H 0.14 2.72 5.64 -52.49 -0.30 2.43 16 29 H 0.11 1.55 8.06 -52.48 -0.42 1.13 16 30 H 0.11 1.49 8.06 -52.49 -0.42 1.07 16 31 H 0.12 1.83 7.93 -52.49 -0.42 1.42 16 32 H 0.11 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.12 1.28 8.14 -51.92 -0.42 0.86 16 34 H 0.14 1.39 8.06 -52.48 -0.42 0.97 16 35 H 0.14 1.14 8.06 -52.49 -0.42 0.72 16 36 H 0.16 1.32 8.06 -52.49 -0.42 0.90 16 LS Contribution 338.96 15.07 5.11 5.11 Total: -1.00 -33.48 338.96 -7.28 -40.76 By element: Atomic # 1 Polarization: 6.74 SS G_CDS: -3.08 Total: 3.66 kcal Atomic # 6 Polarization: -17.35 SS G_CDS: -3.32 Total: -20.67 kcal Atomic # 7 Polarization: -36.45 SS G_CDS: 1.50 Total: -34.95 kcal Atomic # 8 Polarization: -7.99 SS G_CDS: 0.05 Total: -7.95 kcal Atomic # 14 Polarization: 19.95 SS G_CDS: -5.02 Total: 14.92 kcal Atomic # 16 Polarization: 1.62 SS G_CDS: -2.51 Total: -0.88 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -33.48 -7.28 -40.76 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328404577.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.730 kcal (2) G-P(sol) polarization free energy of solvation -33.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.761 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds