Wall clock time and date at job start Tue Mar 31 2020 15:44:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31550 * 1 3 3 Si 1.86797 * 120.00366 * 2 1 4 4 H 1.48499 * 109.47066 * 239.99813 * 3 2 1 5 5 H 1.48506 * 109.46621 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47387 * 119.99740 * 3 2 1 7 7 C 1.38658 * 119.99709 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99815 * 180.02562 * 7 2 1 9 9 O 1.34806 * 119.99786 * 0.02562 * 7 2 1 10 10 C 1.35610 * 116.99560 * 185.06385 * 9 7 2 11 11 C 1.38755 * 120.15160 * 354.40406 * 10 9 7 12 12 C 1.38103 * 120.06797 * 180.02562 * 11 10 9 13 13 C 1.38507 * 120.38412 * 0.02562 * 12 11 10 14 14 C 1.37922 * 120.29941 * 0.02562 * 13 12 11 15 15 C 1.39558 * 119.92065 * 359.97438 * 14 13 12 16 16 C 1.47667 * 120.18320 * 180.02562 * 15 14 13 17 17 N 1.31321 * 126.38793 * 180.02562 * 16 15 14 18 18 N 1.28665 * 109.24391 * 179.97438 * 17 16 15 19 19 C 1.30377 * 109.53767 * 0.02562 * 18 17 16 20 20 C 1.50698 * 126.17662 * 179.97438 * 19 18 17 21 21 C 1.50703 * 109.47343 * 90.01875 * 20 19 18 22 22 C 1.33385 * 125.19895 * 89.72004 * 21 20 19 23 23 C 1.38424 * 114.91945 * 179.85848 * 22 21 20 24 24 C 1.33388 * 114.92043 * 0.43227 * 23 22 21 25 25 S 1.75880 * 125.20501 * 270.02568 * 21 20 19 26 26 O 1.34449 * 107.64362 * 359.75612 * 19 18 17 27 27 H 0.97000 * 119.99769 * 0.02562 * 1 2 3 28 28 H 1.07995 * 119.96797 * 0.03906 * 11 10 9 29 29 H 1.08006 * 119.80823 * 180.26910 * 12 11 10 30 30 H 1.07994 * 119.85347 * 179.97438 * 13 12 11 31 31 H 1.07994 * 120.03462 * 179.97438 * 14 13 12 32 32 H 1.08999 * 109.47289 * 210.02091 * 20 19 18 33 33 H 1.09008 * 109.47342 * 330.01829 * 20 19 18 34 34 H 1.08006 * 122.54211 * 0.02562 * 22 21 20 35 35 H 1.08000 * 122.54126 * 180.19740 * 23 22 21 36 36 H 1.08002 * 125.20203 * 179.79107 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6176 0.0000 4 1 3.1034 1.6962 -1.2125 5 1 1.2845 2.7464 -0.0006 6 1 3.1033 1.6963 1.2125 7 6 2.0087 -1.2008 0.0005 8 1 3.0887 -1.2009 0.0010 9 8 1.3346 -2.3682 0.0005 10 6 2.0690 -3.5032 0.1077 11 6 3.4551 -3.4403 0.0944 12 6 4.2013 -4.5972 0.2031 13 6 3.5745 -5.8263 0.3255 14 6 2.1977 -5.9069 0.3395 15 6 1.4313 -4.7457 0.2304 16 6 -0.0432 -4.8253 0.2453 17 7 -0.8788 -3.8166 0.1509 18 7 -2.0857 -4.2598 0.1994 19 6 -2.0690 -5.5573 0.3261 20 6 -3.2739 -6.4576 0.4198 21 6 -3.6820 -6.8962 -0.9630 22 6 -3.2316 -7.9848 -1.5885 23 6 -3.7521 -8.1869 -2.8552 24 6 -4.6183 -7.2576 -3.2618 25 16 -4.8192 -6.0471 -2.0017 26 8 -0.7826 -5.9476 0.3532 27 1 -0.4850 0.8401 -0.0004 28 1 3.9509 -2.4856 -0.0009 29 1 5.2800 -4.5429 0.1966 30 1 4.1665 -6.7256 0.4096 31 1 1.7135 -6.8675 0.4347 32 1 -3.0275 -7.3329 1.0208 33 1 -4.0966 -5.9161 0.8869 34 1 -2.5171 -8.6590 -1.1397 35 1 -3.4748 -9.0310 -3.4693 36 1 -5.1197 -7.2499 -4.2183 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328404577.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:44:45 Heat of formation + Delta-G solvation = 56.433014 kcal Electronic energy + Delta-G solvation = -24106.634875 eV Core-core repulsion = 20456.908383 eV Total energy + Delta-G solvation = -3649.726492 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.067 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -45.01446 -40.82839 -38.91635 -38.21567 -37.04978 -34.89089 -34.32530 -32.87077 -30.92229 -30.07998 -27.82062 -27.41867 -25.18145 -24.70926 -23.62232 -22.71478 -22.50538 -20.19879 -19.88419 -19.22910 -18.65721 -18.17100 -17.70399 -16.88742 -16.57436 -16.34199 -16.27171 -15.81244 -15.59167 -15.34312 -14.83547 -14.42810 -14.29983 -14.09246 -13.64264 -13.54973 -13.47395 -13.33271 -13.14310 -12.82479 -12.65873 -12.57002 -12.54470 -12.36501 -12.16315 -11.71680 -11.66883 -11.30530 -11.18213 -10.80193 -9.77187 -9.60349 -9.46842 -8.99808 -8.42115 -6.12819 -0.37991 -0.06461 0.61433 0.65623 0.79972 1.05528 1.23194 1.35032 1.47117 1.52100 1.63086 1.81539 2.16202 2.81146 2.95382 3.14932 3.34880 3.54608 3.63891 3.79610 4.14569 4.19618 4.19818 4.31126 4.37536 4.40604 4.60012 4.60323 4.66460 4.70618 4.79171 4.90126 5.05267 5.11963 5.12727 5.28589 5.49992 5.51985 5.56182 5.65507 5.95833 6.09166 6.95464 7.45896 7.74138 8.75523 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.012714 B = 0.003615 C = 0.003001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2201.708635 B = 7744.010217 C = 9327.943485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C -0.016 4.016 3 Si 1.019 2.981 4 H -0.254 1.254 5 H -0.276 1.276 6 H -0.254 1.254 7 C -0.427 4.427 8 H 0.111 0.889 9 O -0.179 6.179 10 C 0.149 3.851 11 C -0.248 4.248 12 C -0.034 4.034 13 C -0.193 4.193 14 C -0.032 4.032 15 C -0.148 4.148 16 C 0.222 3.778 17 N -0.301 5.301 18 N -0.319 5.319 19 C 0.149 3.851 20 C 0.062 3.938 21 C -0.207 4.207 22 C -0.119 4.119 23 C -0.145 4.145 24 C -0.207 4.207 25 S 0.079 5.921 26 O -0.222 6.222 27 H 0.270 0.730 28 H 0.133 0.867 29 H 0.162 0.838 30 H 0.167 0.833 31 H 0.150 0.850 32 H 0.151 0.849 33 H 0.129 0.871 34 H 0.162 0.838 35 H 0.169 0.831 36 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.664 -18.630 -1.935 18.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.217 4.217 3 Si 0.837 3.163 4 H -0.179 1.179 5 H -0.201 1.201 6 H -0.178 1.178 7 C -0.502 4.502 8 H 0.128 0.872 9 O -0.081 6.081 10 C 0.093 3.907 11 C -0.267 4.267 12 C -0.052 4.052 13 C -0.211 4.211 14 C -0.051 4.051 15 C -0.151 4.151 16 C 0.015 3.985 17 N -0.147 5.147 18 N -0.165 5.165 19 C -0.063 4.063 20 C 0.022 3.978 21 C -0.325 4.325 22 C -0.150 4.150 23 C -0.175 4.175 24 C -0.343 4.343 25 S 0.343 5.657 26 O -0.104 6.104 27 H 0.079 0.921 28 H 0.151 0.849 29 H 0.179 0.821 30 H 0.185 0.815 31 H 0.167 0.833 32 H 0.169 0.831 33 H 0.148 0.852 34 H 0.180 0.820 35 H 0.186 0.814 36 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -3.480 -15.842 -1.954 16.337 hybrid contribution 1.112 -1.010 -0.162 1.511 sum -2.368 -16.852 -2.115 17.149 Atomic orbital electron populations 1.70335 1.08142 1.28617 1.45570 1.26682 0.96688 1.02880 0.95441 0.84664 0.77376 0.74123 0.80104 1.17853 1.20117 1.17838 1.21985 0.92817 0.81427 1.54001 0.87221 1.84166 1.35076 1.12076 1.76745 1.19795 0.91830 0.86817 0.92292 1.21288 0.91607 1.01329 1.12452 1.21511 1.01101 0.90925 0.91708 1.21145 0.93015 0.98947 1.07989 1.21168 0.94716 0.95181 0.94040 1.16751 0.82724 0.93848 1.21823 1.25805 0.95673 0.78673 0.98333 1.75306 0.94977 1.25452 1.18939 1.74365 1.15572 1.09018 1.17541 1.28528 0.84575 0.92871 1.00302 1.18723 0.87650 0.97906 0.93487 1.24173 1.06440 1.01143 1.00699 1.20555 1.01230 0.97847 0.95363 1.20499 0.98683 1.01735 0.96587 1.26066 1.06006 0.98176 1.04017 1.84753 1.43273 1.28254 1.09405 1.84733 1.18099 1.36478 1.71044 0.92064 0.84924 0.82085 0.81522 0.83257 0.83087 0.85250 0.82013 0.81403 0.79494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -56.84 13.67 21.61 0.30 -56.54 16 2 C -0.02 -0.92 5.49 84.84 0.47 -0.46 16 3 Si 1.02 43.11 29.55 68.60 2.03 45.13 16 4 H -0.25 -10.00 7.11 99.48 0.71 -9.29 16 5 H -0.28 -11.47 7.11 99.48 0.71 -10.76 16 6 H -0.25 -9.99 7.11 99.48 0.71 -9.28 16 7 C -0.43 -24.80 9.49 67.92 0.64 -24.16 16 8 H 0.11 5.65 5.21 -2.91 -0.02 5.63 16 9 O -0.18 -10.92 8.10 -20.96 -0.17 -11.09 16 10 C 0.15 7.45 6.66 22.87 0.15 7.60 16 11 C -0.25 -10.06 9.16 22.36 0.20 -9.86 16 12 C -0.03 -1.00 10.03 22.30 0.22 -0.78 16 13 C -0.19 -5.15 10.03 22.26 0.22 -4.93 16 14 C -0.03 -1.03 9.72 22.51 0.22 -0.81 16 15 C -0.15 -6.59 5.89 -19.99 -0.12 -6.71 16 16 C 0.22 10.61 7.97 87.26 0.70 11.31 16 17 N -0.30 -16.78 10.77 -166.32 -1.79 -18.57 16 18 N -0.32 -15.47 12.22 -165.30 -2.02 -17.49 16 19 C 0.15 5.54 7.71 88.32 0.68 6.22 16 20 C 0.06 1.47 6.34 29.10 0.18 1.65 16 21 C -0.21 -4.95 5.75 24.59 0.14 -4.81 16 22 C -0.12 -2.40 10.05 21.22 0.21 -2.19 16 23 C -0.15 -2.64 10.18 21.22 0.22 -2.42 16 24 C -0.21 -4.03 11.23 66.72 0.75 -3.28 16 25 S 0.08 1.96 23.33 -56.49 -1.32 0.64 16 26 O -0.22 -8.66 10.67 -9.16 -0.10 -8.76 16 27 H 0.27 15.95 8.31 -92.71 -0.77 15.18 16 28 H 0.13 5.36 5.64 -2.91 -0.02 5.34 16 29 H 0.16 3.31 8.06 -2.91 -0.02 3.29 16 30 H 0.17 2.90 8.06 -2.91 -0.02 2.87 16 31 H 0.15 3.91 7.93 -2.91 -0.02 3.89 16 32 H 0.15 2.33 8.14 -2.39 -0.02 2.31 16 33 H 0.13 2.76 8.14 -2.38 -0.02 2.74 16 34 H 0.16 2.53 8.06 -2.91 -0.02 2.51 16 35 H 0.17 2.06 8.06 -2.91 -0.02 2.04 16 36 H 0.19 2.60 8.06 -2.91 -0.02 2.58 16 Total: -1.00 -84.19 338.96 2.96 -81.23 By element: Atomic # 1 Polarization: 17.91 SS G_CDS: 1.14 Total: 19.05 kcal Atomic # 6 Polarization: -38.51 SS G_CDS: 4.90 Total: -33.62 kcal Atomic # 7 Polarization: -89.08 SS G_CDS: -3.51 Total: -92.60 kcal Atomic # 8 Polarization: -19.58 SS G_CDS: -0.27 Total: -19.85 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.13 kcal Atomic # 16 Polarization: 1.96 SS G_CDS: -1.32 Total: 0.64 kcal Total: -84.19 2.96 -81.23 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328404577.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.664 kcal (2) G-P(sol) polarization free energy of solvation -84.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.231 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds