Wall clock time and date at job start Tue Mar 31 2020 14:48:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86809 * 119.99782 * 2 1 4 4 H 1.48494 * 109.46872 * 269.99797 * 3 2 1 5 5 H 1.48500 * 109.47042 * 30.00363 * 3 2 1 6 6 H 1.48500 * 109.46901 * 149.99985 * 3 2 1 7 7 C 1.37877 * 120.00166 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99484 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00061 * 0.02562 * 7 2 1 10 10 N 1.46499 * 109.47364 * 180.02562 * 9 7 2 11 11 C 1.46497 * 120.00299 * 96.67151 * 10 9 7 12 12 C 1.53001 * 109.47508 * 265.00086 * 11 10 9 13 13 C 1.53005 * 117.49678 * 116.24995 * 12 11 10 14 14 C 1.52995 * 117.49925 * 184.91165 * 12 11 10 15 15 C 1.34779 * 119.99537 * 276.67780 * 10 9 7 16 16 O 1.21537 * 119.99336 * 185.82691 * 15 10 9 17 17 C 1.48017 * 120.00308 * 5.82919 * 15 10 9 18 18 N 1.32796 * 119.72198 * 355.30595 * 17 15 10 19 19 C 1.31433 * 121.66907 * 179.71207 * 18 17 15 20 20 C 1.38808 * 120.91398 * 0.56359 * 19 18 17 21 21 Cl 1.73593 * 120.32341 * 179.74370 * 20 19 18 22 22 C 1.38656 * 119.34512 * 359.72681 * 20 19 18 23 23 C 1.38733 * 118.46956 * 359.97438 * 22 20 19 24 24 Cl 1.73598 * 120.47640 * 179.97438 * 23 22 20 25 25 H 0.97009 * 120.00490 * 0.02562 * 1 2 3 26 26 H 1.08998 * 109.47153 * 59.99293 * 9 7 2 27 27 H 1.09004 * 109.46698 * 299.99702 * 9 7 2 28 28 H 1.09001 * 109.46979 * 145.00145 * 11 10 9 29 29 H 1.09004 * 109.47166 * 25.00264 * 11 10 9 30 30 H 1.09000 * 115.54681 * 330.58760 * 12 11 10 31 31 H 1.08998 * 117.49962 * 214.99881 * 13 12 11 32 32 H 1.08999 * 117.49705 * 0.02767 * 13 12 11 33 33 H 1.09000 * 117.50196 * 359.97438 * 14 12 11 34 34 H 1.08999 * 117.50008 * 144.99933 * 14 12 11 35 35 H 1.07999 * 119.54000 * 180.29405 * 19 18 17 36 36 H 1.07999 * 120.76284 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.4965 2.0464 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4403 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1939 0.0001 9 6 1.2510 -2.4991 0.0005 10 7 2.2030 -3.6126 0.0018 11 6 2.5661 -4.2647 1.2624 12 6 3.8535 -3.6422 1.8064 13 6 3.7707 -2.9034 3.1437 14 6 4.4636 -4.2660 3.0631 15 6 2.7450 -4.0371 -1.1570 16 8 3.4513 -5.0261 -1.1711 17 6 2.4800 -3.2988 -2.4122 18 7 1.6338 -2.2754 -2.4080 19 6 1.3747 -1.5898 -3.4991 20 6 1.9720 -1.9203 -4.7077 21 17 1.6137 -1.0084 -6.1407 22 6 2.8580 -2.9856 -4.7589 23 6 3.1170 -3.6872 -3.5904 24 17 4.2169 -5.0303 -3.5952 25 1 -0.4851 0.8401 -0.0004 26 1 0.6247 -2.5570 -0.8896 27 1 0.6241 -2.5567 0.8904 28 1 2.7224 -5.3294 1.0889 29 1 1.7626 -4.1286 1.9864 30 1 4.5392 -3.2490 1.0558 31 1 4.4021 -2.0243 3.2730 32 1 2.7992 -2.8612 3.6361 33 1 3.9477 -5.1196 3.5027 34 1 5.5508 -4.2833 3.1394 35 1 0.6842 -0.7605 -3.4554 36 1 3.3360 -3.2624 -5.6870 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001335777112.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:48:27 Heat of formation + Delta-G solvation = 32.504306 kcal Electronic energy + Delta-G solvation = -23809.893445 eV Core-core repulsion = 20154.652770 eV Total energy + Delta-G solvation = -3655.240675 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 328.049 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.82809 -40.13466 -38.22776 -37.76726 -37.61639 -36.32611 -34.27268 -33.50711 -32.22276 -29.52795 -27.98847 -25.62431 -24.77436 -24.41578 -23.16012 -21.99488 -20.76619 -18.60907 -18.46293 -18.25838 -17.74540 -17.01558 -16.50306 -16.41233 -16.08965 -15.83184 -15.45037 -14.83778 -14.60102 -14.48053 -14.18468 -13.84363 -13.56334 -13.35102 -13.19829 -12.91196 -12.87829 -12.69715 -12.57061 -12.34769 -12.29863 -12.27013 -12.06484 -11.53206 -11.25001 -10.83343 -10.75382 -10.74225 -10.45993 -10.02615 -9.86622 -9.33124 -8.00226 -6.02835 -0.68698 -0.08718 0.63772 1.08579 1.39343 1.44327 1.49773 1.66420 2.16739 2.49352 2.67532 3.01994 3.18922 3.33732 3.48234 3.55197 3.77168 3.90586 3.95608 4.06870 4.17747 4.39780 4.44879 4.66588 4.76596 4.78793 4.83253 5.04292 5.07571 5.11732 5.30813 5.32686 5.58677 5.91493 5.96578 6.32319 6.54571 6.66705 7.00798 7.27282 7.58936 9.06832 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.009598 B = 0.006482 C = 0.004244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2916.594346 B = 4318.941072 C = 6596.072241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.038 3.962 3 Si 0.923 3.077 4 H -0.277 1.277 5 H -0.285 1.285 6 H -0.282 1.282 7 C -0.483 4.483 8 H 0.032 0.968 9 C 0.247 3.753 10 N -0.578 5.578 11 C 0.151 3.849 12 C -0.171 4.171 13 C -0.173 4.173 14 C -0.154 4.154 15 C 0.555 3.445 16 O -0.554 6.554 17 C 0.069 3.931 18 N -0.378 5.378 19 C 0.101 3.899 20 C -0.052 4.052 21 Cl -0.026 7.026 22 C -0.068 4.068 23 C -0.038 4.038 24 Cl -0.015 7.015 25 H 0.261 0.739 26 H 0.070 0.930 27 H 0.008 0.992 28 H 0.080 0.920 29 H 0.084 0.916 30 H 0.072 0.928 31 H 0.085 0.915 32 H 0.096 0.904 33 H 0.111 0.889 34 H 0.101 0.899 35 H 0.173 0.827 36 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.194 -5.457 -7.004 9.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.162 4.162 3 Si 0.751 3.249 4 H -0.203 1.203 5 H -0.210 1.210 6 H -0.208 1.208 7 C -0.523 4.523 8 H 0.050 0.950 9 C 0.127 3.873 10 N -0.306 5.306 11 C 0.029 3.971 12 C -0.190 4.190 13 C -0.210 4.210 14 C -0.191 4.191 15 C 0.341 3.659 16 O -0.434 6.434 17 C -0.069 4.069 18 N -0.088 5.088 19 C -0.059 4.059 20 C -0.082 4.082 21 Cl 0.003 6.997 22 C -0.094 4.094 23 C -0.068 4.068 24 Cl 0.014 6.986 25 H 0.070 0.930 26 H 0.087 0.913 27 H 0.026 0.974 28 H 0.099 0.901 29 H 0.102 0.898 30 H 0.090 0.910 31 H 0.103 0.897 32 H 0.115 0.885 33 H 0.129 0.871 34 H 0.119 0.881 35 H 0.190 0.810 36 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges 4.051 -5.684 -6.291 9.397 hybrid contribution 0.785 1.256 -0.763 1.666 sum 4.836 -4.428 -7.054 9.631 Atomic orbital electron populations 1.69982 1.06407 1.26930 1.51906 1.25157 0.95109 1.00195 0.95730 0.86110 0.78822 0.81856 0.78130 1.20276 1.21032 1.20792 1.21157 0.91663 0.91270 1.48161 0.94970 1.19706 0.87452 0.82238 0.97941 1.48202 1.42873 1.34067 1.05498 1.21050 0.95141 0.96357 0.84589 1.22445 0.99377 1.05638 0.91563 1.22969 1.02564 0.95810 0.99651 1.23033 1.00467 0.96519 0.99126 1.17916 0.80637 0.83747 0.83577 1.90759 1.39882 1.26201 1.86512 1.21330 0.96642 0.95047 0.93915 1.68990 1.11004 1.02290 1.26542 1.23366 0.97879 0.98802 0.85898 1.22339 0.99515 0.95993 0.90366 1.98389 1.93495 1.72390 1.35450 1.21582 0.96503 0.92758 0.98596 1.21994 0.96587 0.94030 0.94220 1.98399 1.59621 1.42069 1.98511 0.92995 0.91288 0.97448 0.90136 0.89784 0.90994 0.89651 0.88514 0.87058 0.88054 0.80994 0.79406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -48.41 13.29 21.45 0.28 -48.13 16 2 C 0.04 1.92 5.46 84.66 0.46 2.38 16 3 Si 0.92 41.73 29.54 68.60 2.03 43.75 16 4 H -0.28 -12.22 7.11 99.48 0.71 -11.52 16 5 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 6 H -0.28 -12.95 7.11 99.48 0.71 -12.25 16 7 C -0.48 -24.52 7.63 25.60 0.20 -24.33 16 8 H 0.03 1.73 7.81 -2.91 -0.02 1.71 16 9 C 0.25 11.73 4.80 85.63 0.41 12.14 16 10 N -0.58 -24.54 2.49 -829.37 -2.06 -26.61 16 11 C 0.15 5.48 5.73 86.38 0.50 5.98 16 12 C -0.17 -5.95 5.98 -10.79 -0.06 -6.01 16 13 C -0.17 -5.35 10.18 30.62 0.31 -5.03 16 14 C -0.15 -4.06 10.25 30.62 0.31 -3.75 16 15 C 0.55 23.48 7.55 86.84 0.66 24.14 16 16 O -0.55 -23.64 13.59 -3.83 -0.05 -23.69 16 17 C 0.07 2.73 6.59 41.89 0.28 3.00 16 18 N -0.38 -15.37 4.81 -184.76 -0.89 -16.26 16 19 C 0.10 3.46 10.98 84.89 0.93 4.39 16 20 C -0.05 -1.44 6.35 22.51 0.14 -1.30 16 21 Cl -0.03 -0.58 28.98 -2.72 -0.08 -0.66 16 22 C -0.07 -1.77 9.78 22.49 0.22 -1.55 16 23 C -0.04 -1.23 6.37 22.68 0.14 -1.08 16 24 Cl -0.02 -0.47 26.04 -2.72 -0.07 -0.54 16 25 H 0.26 13.32 8.31 -92.70 -0.77 12.55 16 26 H 0.07 3.44 5.51 -2.39 -0.01 3.43 16 27 H 0.01 0.38 7.77 -2.39 -0.02 0.36 16 28 H 0.08 2.79 7.50 -2.39 -0.02 2.77 16 29 H 0.08 2.86 7.52 -2.38 -0.02 2.84 16 30 H 0.07 2.91 8.14 -2.39 -0.02 2.89 16 31 H 0.08 2.66 8.14 -2.39 -0.02 2.64 16 32 H 0.10 2.91 8.03 -2.39 -0.02 2.89 16 33 H 0.11 2.49 8.14 -2.39 -0.02 2.47 16 34 H 0.10 2.41 8.14 -2.39 -0.02 2.39 16 35 H 0.17 5.75 8.06 -2.91 -0.02 5.73 16 36 H 0.19 3.51 8.06 -2.91 -0.02 3.48 16 Total: -1.00 -57.55 338.86 4.77 -52.78 By element: Atomic # 1 Polarization: 9.28 SS G_CDS: 1.12 Total: 10.40 kcal Atomic # 6 Polarization: 4.48 SS G_CDS: 4.50 Total: 8.97 kcal Atomic # 7 Polarization: -88.33 SS G_CDS: -2.67 Total: -91.00 kcal Atomic # 8 Polarization: -23.64 SS G_CDS: -0.05 Total: -23.69 kcal Atomic # 14 Polarization: 41.73 SS G_CDS: 2.03 Total: 43.75 kcal Atomic # 17 Polarization: -1.06 SS G_CDS: -0.15 Total: -1.21 kcal Total: -57.55 4.77 -52.78 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001335777112.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.282 kcal (2) G-P(sol) polarization free energy of solvation -57.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.778 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds