Wall clock time and date at job start Tue Mar 31 2020 15:10:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86800 * 120.00051 * 2 1 4 4 H 1.48505 * 109.47315 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47086 * 300.00086 * 3 2 1 6 6 H 1.48495 * 109.47235 * 60.00022 * 3 2 1 7 7 C 1.37887 * 120.00268 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99906 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99381 * 359.97438 * 7 2 1 10 10 H 1.09000 * 109.47292 * 60.01083 * 9 7 2 11 11 O 1.45204 * 109.46486 * 179.97438 * 9 7 2 12 12 C 1.34225 * 116.99948 * 210.00076 * 11 9 7 13 13 O 1.20825 * 120.00022 * 0.02562 * 12 11 9 14 14 C 1.50700 * 120.00405 * 180.02562 * 12 11 9 15 15 C 1.53001 * 109.47695 * 179.97438 * 14 12 11 16 16 H 1.09003 * 109.29294 * 54.73711 * 15 14 12 17 17 C 1.52635 * 109.38294 * 174.46335 * 15 14 12 18 18 S 1.81179 * 109.98828 * 187.01020 * 17 15 14 19 19 C 1.81168 * 103.31418 * 297.38607 * 18 17 15 20 20 C 1.52638 * 109.99051 * 62.62132 * 19 18 17 21 21 S 1.81168 * 109.38279 * 295.00001 * 15 14 12 22 22 C 1.50692 * 109.47421 * 299.99749 * 9 7 2 23 23 C 1.34517 * 125.78497 * 100.00401 * 22 9 7 24 24 C 1.41392 * 106.83937 * 179.97438 * 23 22 9 25 25 C 1.34509 * 106.84026 * 0.02562 * 24 23 22 26 26 O 1.34299 * 125.79463 * 279.69846 * 22 9 7 27 27 H 0.96992 * 120.00349 * 359.97438 * 1 2 3 28 28 H 1.09003 * 109.47389 * 59.99346 * 14 12 11 29 29 H 1.09007 * 109.46949 * 300.00545 * 14 12 11 30 30 H 1.08998 * 109.38498 * 66.85637 * 17 15 14 31 31 H 1.08997 * 109.30196 * 307.11575 * 17 15 14 32 32 H 1.08999 * 109.38702 * 302.45642 * 19 18 17 33 33 H 1.09007 * 109.29408 * 182.71843 * 19 18 17 34 34 H 1.09004 * 109.38423 * 172.99061 * 20 19 18 35 35 H 1.08998 * 109.38967 * 53.30264 * 20 19 18 36 36 H 1.07998 * 126.58309 * 359.96551 * 23 22 9 37 37 H 1.07997 * 126.57356 * 179.97438 * 24 23 22 38 38 H 1.07996 * 125.78936 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 1 0.6241 -2.5568 -0.8904 11 8 2.1947 -3.6028 -0.0018 12 6 1.8030 -4.7387 -0.6000 13 8 0.7081 -4.8085 -1.1062 14 6 2.7288 -5.9272 -0.6402 15 6 2.0442 -7.0825 -1.3734 16 1 1.7208 -6.7433 -2.3575 17 6 3.0308 -8.2359 -1.5342 18 16 2.3075 -9.5288 -2.5772 19 6 0.8660 -10.0748 -1.6255 20 6 -0.1207 -8.9213 -1.4648 21 16 0.6025 -7.6285 -0.4216 22 6 0.3852 -2.5793 1.2302 23 6 -0.9350 -2.3262 1.2810 24 6 -1.3383 -2.5220 2.6220 25 6 -0.2404 -2.8824 3.3104 26 8 0.7994 -2.9211 2.4611 27 1 -0.4850 0.8399 0.0004 28 1 2.9695 -6.2349 0.3774 29 1 3.6454 -5.6561 -1.1641 30 1 3.2651 -8.6509 -0.5539 31 1 3.9450 -7.8660 -1.9983 32 1 1.1894 -10.4140 -0.6414 33 1 0.3788 -10.8971 -2.1495 34 1 -1.0359 -9.2899 -1.0015 35 1 -0.3549 -8.5063 -2.4450 36 1 -1.5658 -2.0301 0.4559 37 1 -2.3362 -2.4038 3.0176 38 1 -0.2023 -3.1070 4.3661 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001345547647.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:10:57 Heat of formation + Delta-G solvation = -70.590230 kcal Electronic energy + Delta-G solvation = -23600.220485 eV Core-core repulsion = 20048.137052 eV Total energy + Delta-G solvation = -3552.083433 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.064 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.32034 -39.61316 -36.12340 -34.79306 -33.29302 -33.19097 -31.68465 -29.83243 -28.42824 -26.57988 -24.11271 -23.47879 -22.39162 -20.67457 -20.21320 -19.25644 -17.55212 -17.22023 -16.68830 -16.67160 -16.36614 -15.82127 -15.27264 -14.91523 -14.67464 -14.42998 -14.32503 -14.07421 -13.70253 -13.29380 -13.16086 -12.93193 -12.52089 -12.38376 -11.89208 -11.72613 -11.57484 -11.51854 -11.24923 -11.12113 -11.00013 -10.94771 -10.40665 -10.36419 -10.08951 -9.82104 -9.63733 -9.37948 -8.81050 -8.63960 -8.15179 -7.59257 -7.23232 -6.21618 -4.39719 1.30090 1.52093 2.08679 2.41897 2.89079 2.92400 3.20092 3.26210 3.30387 3.46881 3.96517 4.20770 4.24305 4.36752 4.45481 4.58776 4.71649 4.77680 4.99764 5.06689 5.14699 5.27851 5.32540 5.43542 5.50265 5.65045 5.73771 5.87713 6.09003 6.38944 6.72732 7.00731 7.16578 7.25558 7.40217 7.69982 7.71511 7.87003 8.37626 8.51734 8.78634 9.27277 10.77028 Molecular weight = 328.06amu Principal moments of inertia in cm(-1) A = 0.018828 B = 0.003493 C = 0.003144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1486.787354 B = 8014.103495 C = 8902.705693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.070 3.930 3 Si 0.913 3.087 4 H -0.269 1.269 5 H -0.280 1.280 6 H -0.281 1.281 7 C -0.531 4.531 8 H 0.078 0.922 9 C 0.300 3.700 10 H 0.078 0.922 11 O -0.350 6.350 12 C 0.448 3.552 13 O -0.493 6.493 14 C -0.097 4.097 15 C -0.049 4.049 16 H 0.110 0.890 17 C -0.082 4.082 18 S -0.253 6.253 19 C -0.087 4.087 20 C -0.098 4.098 21 S -0.213 6.213 22 C 0.028 3.972 23 C -0.178 4.178 24 C -0.217 4.217 25 C -0.088 4.088 26 O -0.177 6.177 27 H 0.268 0.732 28 H 0.109 0.891 29 H 0.118 0.882 30 H 0.099 0.901 31 H 0.119 0.881 32 H 0.096 0.904 33 H 0.113 0.887 34 H 0.115 0.885 35 H 0.097 0.903 36 H 0.140 0.860 37 H 0.130 0.870 38 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.770 -16.805 -1.173 17.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.501 5.501 2 C -0.136 4.136 3 Si 0.739 3.261 4 H -0.193 1.193 5 H -0.206 1.206 6 H -0.207 1.207 7 C -0.569 4.569 8 H 0.096 0.904 9 C 0.246 3.754 10 H 0.096 0.904 11 O -0.266 6.266 12 C 0.289 3.711 13 O -0.381 6.381 14 C -0.137 4.137 15 C -0.180 4.180 16 H 0.128 0.872 17 C -0.233 4.233 18 S -0.025 6.025 19 C -0.238 4.238 20 C -0.249 4.249 21 S 0.015 5.985 22 C -0.023 4.023 23 C -0.197 4.197 24 C -0.236 4.236 25 C -0.156 4.156 26 O -0.074 6.074 27 H 0.078 0.922 28 H 0.128 0.872 29 H 0.136 0.864 30 H 0.118 0.882 31 H 0.137 0.863 32 H 0.114 0.886 33 H 0.132 0.868 34 H 0.133 0.867 35 H 0.115 0.885 36 H 0.158 0.842 37 H 0.148 0.852 38 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 2.533 -16.762 -1.261 16.999 hybrid contribution -0.200 1.169 0.230 1.208 sum 2.333 -15.593 -1.032 15.800 Atomic orbital electron populations 1.70039 1.05904 1.27544 1.46638 1.24943 0.95120 0.99534 0.94031 0.86197 0.80021 0.82051 0.77806 1.19283 1.20558 1.20675 1.20933 0.94151 0.87610 1.54162 0.90431 1.19161 0.85668 0.81701 0.88826 0.90408 1.86530 1.48425 1.21971 1.69685 1.23089 0.86861 0.85020 0.76166 1.90678 1.21819 1.82654 1.42923 1.21150 0.98636 0.90042 1.03889 1.23165 0.95358 0.96203 1.03295 0.87187 1.23639 1.00748 0.95496 1.03391 1.86778 1.33602 1.47742 1.34373 1.23582 0.95954 1.00431 1.03794 1.23569 1.00998 0.96070 1.04231 1.87234 1.34197 1.46083 1.30939 1.23500 0.94130 1.00111 0.84584 1.21191 0.94790 1.06938 0.96775 1.21677 0.98850 1.07977 0.95145 1.23579 0.86153 1.10304 0.95557 1.83982 1.36721 1.68452 1.18229 0.92220 0.87232 0.86379 0.88235 0.86281 0.88586 0.86850 0.86720 0.88487 0.84205 0.85213 0.79958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.92 10.95 55.43 0.61 -23.32 16 2 C 0.07 1.87 5.30 -17.82 -0.09 1.78 16 3 Si 0.91 20.81 29.54 -169.99 -5.02 15.79 16 4 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 5 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 6 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 7 C -0.53 -14.58 8.89 -34.44 -0.31 -14.88 16 8 H 0.08 2.09 7.81 -52.49 -0.41 1.68 16 9 C 0.30 7.87 2.42 -29.04 -0.07 7.80 16 10 H 0.08 2.19 7.14 -51.93 -0.37 1.82 16 11 O -0.35 -8.09 9.85 -41.31 -0.41 -8.50 16 12 C 0.45 8.83 7.63 36.01 0.27 9.10 16 13 O -0.49 -10.92 14.00 -18.75 -0.26 -11.19 16 14 C -0.10 -1.29 5.27 -27.88 -0.15 -1.44 16 15 C -0.05 -0.61 2.02 -26.92 -0.05 -0.66 16 16 H 0.11 1.51 7.94 -51.92 -0.41 1.10 16 17 C -0.08 -0.77 5.53 36.97 0.20 -0.57 16 18 S -0.25 -2.52 22.05 -107.50 -2.37 -4.90 16 19 C -0.09 -0.73 6.25 36.97 0.23 -0.50 16 20 C -0.10 -1.00 6.25 36.97 0.23 -0.77 16 21 S -0.21 -2.96 19.85 -107.50 -2.13 -5.09 16 22 C 0.03 0.72 5.53 -35.63 -0.20 0.53 16 23 C -0.18 -4.46 9.17 -39.70 -0.36 -4.82 16 24 C -0.22 -4.71 10.91 -39.70 -0.43 -5.14 16 25 C -0.09 -1.85 12.09 29.41 0.36 -1.49 16 26 O -0.18 -4.39 10.65 4.37 0.05 -4.34 16 27 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 28 H 0.11 1.34 8.14 -51.93 -0.42 0.92 16 29 H 0.12 1.24 8.13 -51.92 -0.42 0.82 16 30 H 0.10 0.85 8.14 -51.92 -0.42 0.43 16 31 H 0.12 0.91 8.12 -51.92 -0.42 0.49 16 32 H 0.10 0.77 8.14 -51.92 -0.42 0.34 16 33 H 0.11 0.75 8.14 -51.91 -0.42 0.33 16 34 H 0.11 1.00 8.14 -51.91 -0.42 0.57 16 35 H 0.10 1.04 8.14 -51.92 -0.42 0.62 16 36 H 0.14 3.60 7.87 -52.49 -0.41 3.19 16 37 H 0.13 2.39 8.06 -52.49 -0.42 1.97 16 38 H 0.18 2.90 8.06 -52.49 -0.42 2.48 16 LS Contribution 345.78 15.07 5.21 5.21 Total: -1.00 -31.79 345.78 -9.67 -41.46 By element: Atomic # 1 Polarization: 10.92 SS G_CDS: -4.97 Total: 5.95 kcal Atomic # 6 Polarization: -10.70 SS G_CDS: -0.37 Total: -11.07 kcal Atomic # 7 Polarization: -23.92 SS G_CDS: 0.61 Total: -23.32 kcal Atomic # 8 Polarization: -23.40 SS G_CDS: -0.62 Total: -24.03 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Atomic # 16 Polarization: -5.49 SS G_CDS: -4.50 Total: -9.99 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -31.79 -9.67 -41.46 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345547647.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.133 kcal (2) G-P(sol) polarization free energy of solvation -31.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds