Wall clock time and date at job start Tue Mar 31 2020 15:10:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86800 * 120.00051 * 2 1 4 4 H 1.48505 * 109.47315 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47086 * 300.00086 * 3 2 1 6 6 H 1.48495 * 109.47235 * 60.00022 * 3 2 1 7 7 C 1.37887 * 120.00268 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99906 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99381 * 359.97438 * 7 2 1 10 10 H 1.09000 * 109.47292 * 60.01083 * 9 7 2 11 11 O 1.45204 * 109.46486 * 179.97438 * 9 7 2 12 12 C 1.34225 * 116.99948 * 210.00076 * 11 9 7 13 13 O 1.20825 * 120.00022 * 0.02562 * 12 11 9 14 14 C 1.50700 * 120.00405 * 180.02562 * 12 11 9 15 15 C 1.53001 * 109.47695 * 179.97438 * 14 12 11 16 16 H 1.09003 * 109.29294 * 54.73711 * 15 14 12 17 17 C 1.52635 * 109.38294 * 174.46335 * 15 14 12 18 18 S 1.81179 * 109.98828 * 187.01020 * 17 15 14 19 19 C 1.81168 * 103.31418 * 297.38607 * 18 17 15 20 20 C 1.52638 * 109.99051 * 62.62132 * 19 18 17 21 21 S 1.81168 * 109.38279 * 295.00001 * 15 14 12 22 22 C 1.50692 * 109.47421 * 299.99749 * 9 7 2 23 23 C 1.34517 * 125.78497 * 100.00401 * 22 9 7 24 24 C 1.41392 * 106.83937 * 179.97438 * 23 22 9 25 25 C 1.34509 * 106.84026 * 0.02562 * 24 23 22 26 26 O 1.34299 * 125.79463 * 279.69846 * 22 9 7 27 27 H 0.96992 * 120.00349 * 359.97438 * 1 2 3 28 28 H 1.09003 * 109.47389 * 59.99346 * 14 12 11 29 29 H 1.09007 * 109.46949 * 300.00545 * 14 12 11 30 30 H 1.08998 * 109.38498 * 66.85637 * 17 15 14 31 31 H 1.08997 * 109.30196 * 307.11575 * 17 15 14 32 32 H 1.08999 * 109.38702 * 302.45642 * 19 18 17 33 33 H 1.09007 * 109.29408 * 182.71843 * 19 18 17 34 34 H 1.09004 * 109.38423 * 172.99061 * 20 19 18 35 35 H 1.08998 * 109.38967 * 53.30264 * 20 19 18 36 36 H 1.07998 * 126.58309 * 359.96551 * 23 22 9 37 37 H 1.07997 * 126.57356 * 179.97438 * 24 23 22 38 38 H 1.07996 * 125.78936 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 1 0.6241 -2.5568 -0.8904 11 8 2.1947 -3.6028 -0.0018 12 6 1.8030 -4.7387 -0.6000 13 8 0.7081 -4.8085 -1.1062 14 6 2.7288 -5.9272 -0.6402 15 6 2.0442 -7.0825 -1.3734 16 1 1.7208 -6.7433 -2.3575 17 6 3.0308 -8.2359 -1.5342 18 16 2.3075 -9.5288 -2.5772 19 6 0.8660 -10.0748 -1.6255 20 6 -0.1207 -8.9213 -1.4648 21 16 0.6025 -7.6285 -0.4216 22 6 0.3852 -2.5793 1.2302 23 6 -0.9350 -2.3262 1.2810 24 6 -1.3383 -2.5220 2.6220 25 6 -0.2404 -2.8824 3.3104 26 8 0.7994 -2.9211 2.4611 27 1 -0.4850 0.8399 0.0004 28 1 2.9695 -6.2349 0.3774 29 1 3.6454 -5.6561 -1.1641 30 1 3.2651 -8.6509 -0.5539 31 1 3.9450 -7.8660 -1.9983 32 1 1.1894 -10.4140 -0.6414 33 1 0.3788 -10.8971 -2.1495 34 1 -1.0359 -9.2899 -1.0015 35 1 -0.3549 -8.5063 -2.4450 36 1 -1.5658 -2.0301 0.4559 37 1 -2.3362 -2.4038 3.0176 38 1 -0.2023 -3.1070 4.3661 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001345547647.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:10:57 Heat of formation + Delta-G solvation = -87.728554 kcal Electronic energy + Delta-G solvation = -23600.963658 eV Core-core repulsion = 20048.137052 eV Total energy + Delta-G solvation = -3552.826606 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.064 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -43.16455 -41.25849 -37.75209 -35.94286 -35.27223 -34.02562 -33.53968 -31.67050 -29.60432 -28.47742 -25.25049 -24.84140 -23.68552 -22.40796 -21.84440 -21.02593 -19.15707 -18.51769 -18.45766 -18.00764 -17.70636 -17.08181 -16.93630 -16.50981 -16.27618 -16.02042 -15.21021 -15.10872 -14.86380 -14.66769 -14.29219 -14.13427 -13.87749 -13.74616 -13.48703 -13.42518 -13.21298 -13.07035 -12.98627 -12.82348 -12.52505 -12.19580 -11.99545 -11.79207 -11.38469 -11.30692 -11.23305 -10.80864 -10.64465 -10.51340 -9.10610 -8.97247 -8.63717 -8.23702 -6.52367 0.50275 0.64023 1.10472 1.29698 1.35687 1.39975 1.41308 1.52659 1.54164 1.89790 2.13322 2.40124 2.43510 3.01520 3.39859 3.53498 3.64307 3.91198 4.00441 4.03672 4.21813 4.28787 4.31526 4.40172 4.45826 4.54801 4.58229 4.58859 4.71377 4.73239 4.77543 5.16065 5.32802 5.43836 5.46762 5.69330 5.84639 5.99205 6.49385 6.60117 6.95625 7.20235 8.73321 Molecular weight = 328.06amu Principal moments of inertia in cm(-1) A = 0.018828 B = 0.003493 C = 0.003144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1486.787354 B = 8014.103495 C = 8902.705693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.024 3.976 3 Si 0.980 3.020 4 H -0.260 1.260 5 H -0.271 1.271 6 H -0.278 1.278 7 C -0.556 4.556 8 H 0.075 0.925 9 C 0.304 3.696 10 H 0.041 0.959 11 O -0.360 6.360 12 C 0.438 3.562 13 O -0.524 6.524 14 C -0.086 4.086 15 C -0.032 4.032 16 H 0.091 0.909 17 C -0.072 4.072 18 S -0.274 6.274 19 C -0.077 4.077 20 C -0.080 4.080 21 S -0.288 6.288 22 C 0.000 4.000 23 C -0.194 4.194 24 C -0.227 4.227 25 C -0.071 4.071 26 O -0.195 6.195 27 H 0.270 0.730 28 H 0.128 0.872 29 H 0.154 0.846 30 H 0.113 0.887 31 H 0.141 0.859 32 H 0.104 0.896 33 H 0.137 0.863 34 H 0.130 0.870 35 H 0.088 0.912 36 H 0.120 0.880 37 H 0.164 0.836 38 H 0.239 0.761 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.942 -17.877 -0.017 18.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.179 4.179 3 Si 0.803 3.197 4 H -0.184 1.184 5 H -0.197 1.197 6 H -0.204 1.204 7 C -0.593 4.593 8 H 0.093 0.907 9 C 0.250 3.750 10 H 0.059 0.941 11 O -0.277 6.277 12 C 0.281 3.719 13 O -0.413 6.413 14 C -0.126 4.126 15 C -0.163 4.163 16 H 0.109 0.891 17 C -0.222 4.222 18 S -0.046 6.046 19 C -0.227 4.227 20 C -0.230 4.230 21 S -0.060 6.060 22 C -0.050 4.050 23 C -0.213 4.213 24 C -0.247 4.247 25 C -0.138 4.138 26 O -0.092 6.092 27 H 0.079 0.921 28 H 0.146 0.854 29 H 0.172 0.828 30 H 0.131 0.869 31 H 0.159 0.841 32 H 0.123 0.877 33 H 0.155 0.845 34 H 0.148 0.852 35 H 0.106 0.894 36 H 0.138 0.862 37 H 0.181 0.819 38 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges 3.711 -17.863 -0.118 18.245 hybrid contribution -0.670 1.404 -0.135 1.562 sum 3.040 -16.459 -0.253 16.739 Atomic orbital electron populations 1.70173 1.07247 1.28357 1.46850 1.25829 0.95997 1.02809 0.93278 0.85178 0.79019 0.77537 0.77983 1.18423 1.19654 1.20371 1.21200 0.94187 0.88776 1.55099 0.90692 1.18689 0.85621 0.82703 0.88011 0.94115 1.86515 1.47921 1.22629 1.70629 1.24352 0.87564 0.85248 0.74689 1.90657 1.23606 1.82996 1.44064 1.21335 0.98236 0.87270 1.05726 1.23086 0.95005 0.96842 1.01376 0.89108 1.23595 1.00296 0.94051 1.04306 1.86888 1.34550 1.47737 1.35414 1.23588 0.94846 0.99965 1.04346 1.23570 1.01741 0.95043 1.02684 1.87410 1.36564 1.48625 1.33419 1.23330 0.94427 1.02052 0.85199 1.21253 0.94684 1.07254 0.98148 1.22023 1.00949 1.08192 0.93487 1.24640 0.84686 1.07325 0.97101 1.83954 1.38235 1.68841 1.18144 0.92110 0.85450 0.82849 0.86886 0.84066 0.87703 0.84503 0.85244 0.89373 0.86233 0.81853 0.74516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -50.74 10.95 21.45 0.23 -50.51 16 2 C 0.02 1.32 5.30 84.66 0.45 1.77 16 3 Si 0.98 42.94 29.54 68.60 2.03 44.97 16 4 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 5 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 6 H -0.28 -11.99 7.11 99.48 0.71 -11.29 16 7 C -0.56 -31.50 8.89 25.60 0.23 -31.27 16 8 H 0.07 4.15 7.81 -2.91 -0.02 4.12 16 9 C 0.30 16.78 2.42 29.10 0.07 16.85 16 10 H 0.04 2.50 7.14 -2.39 -0.02 2.48 16 11 O -0.36 -17.29 9.85 -49.39 -0.49 -17.78 16 12 C 0.44 17.83 7.63 71.24 0.54 18.37 16 13 O -0.52 -24.56 14.00 21.97 0.31 -24.25 16 14 C -0.09 -2.22 5.27 29.85 0.16 -2.06 16 15 C -0.03 -0.77 2.02 30.47 0.06 -0.71 16 16 H 0.09 2.52 7.94 -2.39 -0.02 2.50 16 17 C -0.07 -1.19 5.53 71.86 0.40 -0.79 16 18 S -0.27 -4.95 22.05 -56.49 -1.25 -6.19 16 19 C -0.08 -1.14 6.25 71.86 0.45 -0.69 16 20 C -0.08 -1.56 6.25 71.86 0.45 -1.11 16 21 S -0.29 -8.02 19.85 -56.49 -1.12 -9.14 16 22 C 0.00 0.03 5.53 24.83 0.14 0.16 16 23 C -0.19 -10.04 9.17 22.19 0.20 -9.84 16 24 C -0.23 -9.64 10.91 22.19 0.24 -9.40 16 25 C -0.07 -2.83 12.09 66.97 0.81 -2.02 16 26 O -0.19 -9.62 10.65 -1.24 -0.01 -9.63 16 27 H 0.27 14.45 8.31 -92.71 -0.77 13.68 16 28 H 0.13 2.90 8.14 -2.39 -0.02 2.88 16 29 H 0.15 2.87 8.13 -2.38 -0.02 2.85 16 30 H 0.11 1.61 8.14 -2.40 -0.02 1.59 16 31 H 0.14 1.72 8.12 -2.40 -0.02 1.70 16 32 H 0.10 1.42 8.14 -2.40 -0.02 1.40 16 33 H 0.14 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.13 2.10 8.14 -2.39 -0.02 2.08 16 35 H 0.09 1.87 8.14 -2.40 -0.02 1.85 16 36 H 0.12 6.55 7.87 -2.91 -0.02 6.53 16 37 H 0.16 5.65 8.06 -2.91 -0.02 5.62 16 38 H 0.24 6.46 8.06 -2.91 -0.02 6.44 16 Total: -1.00 -73.37 345.78 4.97 -68.40 By element: Atomic # 1 Polarization: 23.80 SS G_CDS: 1.07 Total: 24.86 kcal Atomic # 6 Polarization: -24.93 SS G_CDS: 4.20 Total: -20.73 kcal Atomic # 7 Polarization: -50.74 SS G_CDS: 0.23 Total: -50.51 kcal Atomic # 8 Polarization: -51.46 SS G_CDS: -0.19 Total: -51.66 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 2.03 Total: 44.97 kcal Atomic # 16 Polarization: -12.97 SS G_CDS: -2.37 Total: -15.33 kcal Total: -73.37 4.97 -68.40 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345547647.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.328 kcal (2) G-P(sol) polarization free energy of solvation -73.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds