Wall clock time and date at job start Tue Mar 31 2020 15:11:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86809 * 119.99750 * 2 1 4 4 H 1.48499 * 109.47211 * 270.00082 * 3 2 1 5 5 H 1.48498 * 109.47358 * 30.00266 * 3 2 1 6 6 H 1.48496 * 109.46959 * 150.00001 * 3 2 1 7 7 C 1.37870 * 120.00406 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00627 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99500 * 359.97438 * 7 2 1 10 10 H 1.08992 * 109.47752 * 299.99787 * 9 7 2 11 11 O 1.45204 * 109.46973 * 179.97438 * 9 7 2 12 12 C 1.34225 * 116.99948 * 150.00130 * 11 9 7 13 13 O 1.20825 * 120.00022 * 0.02562 * 12 11 9 14 14 C 1.50700 * 120.00405 * 180.02562 * 12 11 9 15 15 C 1.53001 * 109.47695 * 179.97438 * 14 12 11 16 16 H 1.09003 * 109.29294 * 54.73711 * 15 14 12 17 17 C 1.52635 * 109.38294 * 174.46335 * 15 14 12 18 18 S 1.81179 * 109.98828 * 187.01020 * 17 15 14 19 19 C 1.81168 * 103.31418 * 297.38607 * 18 17 15 20 20 C 1.52638 * 109.99051 * 62.62132 * 19 18 17 21 21 S 1.81168 * 109.38279 * 295.00001 * 15 14 12 22 22 C 1.50701 * 109.47282 * 60.00504 * 9 7 2 23 23 C 1.34512 * 125.78640 * 264.71427 * 22 9 7 24 24 C 1.41385 * 106.83888 * 179.88717 * 23 22 9 25 25 C 1.34513 * 106.83956 * 0.36732 * 24 23 22 26 26 O 1.34300 * 108.42251 * 359.77857 * 25 24 23 27 27 H 0.96999 * 120.00108 * 359.97438 * 1 2 3 28 28 H 1.09003 * 109.47389 * 59.99346 * 14 12 11 29 29 H 1.09007 * 109.46949 * 300.00545 * 14 12 11 30 30 H 1.08998 * 109.38498 * 66.85637 * 17 15 14 31 31 H 1.08997 * 109.30196 * 307.11575 * 17 15 14 32 32 H 1.08999 * 109.38702 * 302.45642 * 19 18 17 33 33 H 1.09007 * 109.29408 * 182.71843 * 19 18 17 34 34 H 1.09004 * 109.38423 * 172.99061 * 20 19 18 35 35 H 1.08998 * 109.38967 * 53.30264 * 20 19 18 36 36 H 1.08000 * 126.58222 * 0.02632 * 23 22 9 37 37 H 1.08004 * 126.57602 * 180.12683 * 24 23 22 38 38 H 1.08006 * 125.78590 * 179.78711 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.4966 2.0466 -1.4001 5 1 1.4466 2.6528 0.7001 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2510 -2.4990 -0.0005 10 1 0.6248 -2.5571 0.8896 11 8 2.1946 -3.6027 -0.0018 12 6 1.8038 -4.7392 0.5960 13 8 0.7094 -4.8097 1.1030 14 6 2.7300 -5.9273 0.6347 15 6 2.0469 -7.0830 1.3688 16 1 1.0854 -7.2899 0.8989 17 6 2.9285 -8.3264 1.2875 18 16 2.0480 -9.7554 1.9694 19 6 1.7842 -9.2953 3.7017 20 6 0.9026 -8.0519 3.7829 21 16 1.7831 -6.6227 3.1011 22 6 0.3842 -2.5787 -1.2307 23 6 -0.9158 -2.2403 -1.3002 24 6 -1.3276 -2.4683 -2.6334 25 6 -0.2568 -2.9401 -3.2968 26 8 0.7772 -3.0049 -2.4422 27 1 -0.4850 0.8400 0.0004 28 1 3.6470 -5.6563 1.1581 29 1 2.9701 -6.2342 -0.3833 30 1 3.8428 -8.1595 1.8568 31 1 3.1816 -8.5210 0.2453 32 1 2.7458 -9.0884 4.1715 33 1 1.2966 -10.1191 4.2230 34 1 0.6478 -7.8564 4.8246 35 1 -0.0117 -8.2188 3.2136 36 1 -1.5270 -1.8643 -0.4931 37 1 -2.3140 -2.3000 -3.0400 38 1 -0.2326 -3.2193 -4.3399 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001345547648.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:11:00 Heat of formation + Delta-G solvation = -70.080364 kcal Electronic energy + Delta-G solvation = -23532.979756 eV Core-core repulsion = 19980.918433 eV Total energy + Delta-G solvation = -3552.061323 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.064 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.34590 -39.61053 -36.12334 -34.79256 -33.31628 -33.19829 -31.68669 -29.83002 -28.42837 -26.59731 -24.11484 -23.47784 -22.39284 -20.68422 -20.21921 -19.27275 -17.57106 -17.14455 -16.86079 -16.61925 -16.28123 -15.79575 -15.34028 -14.91589 -14.74080 -14.44211 -14.32893 -14.05404 -13.58554 -13.33282 -13.23114 -12.93692 -12.53329 -12.33020 -11.90937 -11.76857 -11.58249 -11.51055 -11.23815 -11.10267 -10.99424 -10.95249 -10.42449 -10.36064 -10.08159 -9.82999 -9.63965 -9.41281 -8.83278 -8.63796 -8.15156 -7.59781 -7.24608 -6.20896 -4.40055 1.30032 1.51647 2.08717 2.41344 2.87293 2.92628 3.21725 3.26131 3.29194 3.46330 3.94904 4.18036 4.24177 4.36587 4.45333 4.58564 4.71613 4.77708 4.99641 5.06471 5.14852 5.27667 5.32361 5.44449 5.50205 5.64322 5.73785 5.85677 6.07195 6.38714 6.73842 6.99985 7.17603 7.24554 7.40650 7.69672 7.72983 7.86217 8.36112 8.51328 8.78436 9.26990 10.76476 Molecular weight = 328.06amu Principal moments of inertia in cm(-1) A = 0.017533 B = 0.003433 C = 0.003140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1596.617660 B = 8154.898133 C = 8914.791749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.070 3.930 3 Si 0.914 3.086 4 H -0.277 1.277 5 H -0.283 1.283 6 H -0.269 1.269 7 C -0.530 4.530 8 H 0.077 0.923 9 C 0.300 3.700 10 H 0.079 0.921 11 O -0.349 6.349 12 C 0.448 3.552 13 O -0.493 6.493 14 C -0.097 4.097 15 C -0.049 4.049 16 H 0.109 0.891 17 C -0.082 4.082 18 S -0.254 6.254 19 C -0.087 4.087 20 C -0.098 4.098 21 S -0.213 6.213 22 C 0.021 3.979 23 C -0.175 4.175 24 C -0.218 4.218 25 C -0.091 4.091 26 O -0.179 6.179 27 H 0.269 0.731 28 H 0.111 0.889 29 H 0.117 0.883 30 H 0.100 0.900 31 H 0.119 0.881 32 H 0.096 0.904 33 H 0.113 0.887 34 H 0.115 0.885 35 H 0.096 0.904 36 H 0.145 0.855 37 H 0.130 0.870 38 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.621 -15.974 3.221 16.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.136 4.136 3 Si 0.740 3.260 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.194 1.194 7 C -0.567 4.567 8 H 0.095 0.905 9 C 0.247 3.753 10 H 0.097 0.903 11 O -0.266 6.266 12 C 0.289 3.711 13 O -0.381 6.381 14 C -0.137 4.137 15 C -0.180 4.180 16 H 0.127 0.873 17 C -0.233 4.233 18 S -0.025 6.025 19 C -0.238 4.238 20 C -0.248 4.248 21 S 0.015 5.985 22 C -0.030 4.030 23 C -0.194 4.194 24 C -0.238 4.238 25 C -0.158 4.158 26 O -0.076 6.076 27 H 0.078 0.922 28 H 0.129 0.871 29 H 0.135 0.865 30 H 0.118 0.882 31 H 0.137 0.863 32 H 0.114 0.886 33 H 0.132 0.868 34 H 0.133 0.867 35 H 0.115 0.885 36 H 0.163 0.837 37 H 0.148 0.852 38 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 3.382 -15.944 3.334 16.637 hybrid contribution -0.165 1.181 -0.273 1.223 sum 3.217 -14.763 3.061 15.417 Atomic orbital electron populations 1.70026 1.05926 1.27621 1.46637 1.24933 0.95125 0.99532 0.94017 0.86238 0.79694 0.81675 0.78396 1.20331 1.20802 1.19369 1.20897 0.94137 0.87626 1.54044 0.90461 1.19177 0.85595 0.81701 0.88801 0.90317 1.86524 1.48566 1.21997 1.69503 1.23083 0.86985 0.85069 0.75962 1.90678 1.22112 1.83114 1.42187 1.21148 0.98948 0.90394 1.03216 1.23161 1.02771 0.95864 0.96203 0.87253 1.23638 1.00334 0.93616 1.05679 1.86785 1.76580 1.28339 1.10821 1.23582 1.03725 1.01004 0.95445 1.23568 1.01109 0.94628 1.05539 1.87168 1.75757 1.27736 1.07836 1.23598 0.94405 0.99769 0.85182 1.21287 0.95131 1.06045 0.96973 1.21720 0.99302 1.07119 0.95628 1.23590 0.86768 1.09760 0.95700 1.83981 1.37593 1.66842 1.19199 0.92157 0.87117 0.86491 0.88192 0.86315 0.88561 0.86845 0.86684 0.88495 0.83707 0.85194 0.79945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.85 10.50 55.43 0.58 -23.27 16 2 C 0.07 1.87 5.30 -17.82 -0.09 1.78 16 3 Si 0.91 20.84 29.54 -169.99 -5.02 15.82 16 4 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 5 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 6 H -0.27 -6.01 7.11 56.52 0.40 -5.60 16 7 C -0.53 -14.57 8.89 -34.44 -0.31 -14.88 16 8 H 0.08 2.09 7.81 -52.49 -0.41 1.68 16 9 C 0.30 7.90 2.41 -29.03 -0.07 7.83 16 10 H 0.08 2.23 7.16 -51.93 -0.37 1.86 16 11 O -0.35 -8.10 9.83 -42.06 -0.41 -8.51 16 12 C 0.45 8.86 7.63 36.01 0.27 9.13 16 13 O -0.49 -10.96 14.00 -18.75 -0.26 -11.23 16 14 C -0.10 -1.30 5.27 -27.88 -0.15 -1.44 16 15 C -0.05 -0.61 2.02 -26.92 -0.05 -0.66 16 16 H 0.11 1.53 7.94 -51.92 -0.41 1.12 16 17 C -0.08 -0.77 5.53 36.97 0.20 -0.57 16 18 S -0.25 -2.54 22.05 -107.50 -2.37 -4.91 16 19 C -0.09 -0.73 6.25 36.97 0.23 -0.50 16 20 C -0.10 -0.99 6.25 36.97 0.23 -0.76 16 21 S -0.21 -2.92 19.85 -107.50 -2.13 -5.06 16 22 C 0.02 0.55 5.66 -35.63 -0.20 0.35 16 23 C -0.17 -4.37 9.05 -39.70 -0.36 -4.72 16 24 C -0.22 -4.68 10.91 -39.70 -0.43 -5.11 16 25 C -0.09 -1.86 12.09 29.42 0.36 -1.51 16 26 O -0.18 -4.37 10.63 1.98 0.02 -4.34 16 27 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 28 H 0.11 1.32 8.14 -51.93 -0.42 0.90 16 29 H 0.12 1.27 8.13 -51.92 -0.42 0.85 16 30 H 0.10 0.85 8.14 -51.92 -0.42 0.43 16 31 H 0.12 0.93 8.12 -51.92 -0.42 0.51 16 32 H 0.10 0.76 8.14 -51.92 -0.42 0.34 16 33 H 0.11 0.75 8.14 -51.91 -0.42 0.32 16 34 H 0.12 0.98 8.14 -51.91 -0.42 0.56 16 35 H 0.10 1.04 8.14 -51.92 -0.42 0.61 16 36 H 0.15 3.74 7.51 -52.49 -0.39 3.34 16 37 H 0.13 2.36 8.06 -52.48 -0.42 1.94 16 38 H 0.18 2.83 8.06 -52.48 -0.42 2.41 16 LS Contribution 344.95 15.07 5.20 5.20 Total: -1.00 -31.58 344.95 -9.72 -41.30 By element: Atomic # 1 Polarization: 11.01 SS G_CDS: -4.95 Total: 6.06 kcal Atomic # 6 Polarization: -10.69 SS G_CDS: -0.37 Total: -11.06 kcal Atomic # 7 Polarization: -23.85 SS G_CDS: 0.58 Total: -23.27 kcal Atomic # 8 Polarization: -23.43 SS G_CDS: -0.66 Total: -24.08 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Atomic # 16 Polarization: -5.46 SS G_CDS: -4.50 Total: -9.97 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -31.58 -9.72 -41.30 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345547648.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.785 kcal (2) G-P(sol) polarization free energy of solvation -31.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds