Wall clock time and date at job start Tue Mar 31 2020 15:11:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86809 * 119.99750 * 2 1 4 4 H 1.48499 * 109.47211 * 270.00082 * 3 2 1 5 5 H 1.48498 * 109.47358 * 30.00266 * 3 2 1 6 6 H 1.48496 * 109.46959 * 150.00001 * 3 2 1 7 7 C 1.37870 * 120.00406 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00627 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99500 * 359.97438 * 7 2 1 10 10 H 1.08992 * 109.47752 * 299.99787 * 9 7 2 11 11 O 1.45204 * 109.46973 * 179.97438 * 9 7 2 12 12 C 1.34225 * 116.99948 * 150.00130 * 11 9 7 13 13 O 1.20825 * 120.00022 * 0.02562 * 12 11 9 14 14 C 1.50700 * 120.00405 * 180.02562 * 12 11 9 15 15 C 1.53001 * 109.47695 * 179.97438 * 14 12 11 16 16 H 1.09003 * 109.29294 * 54.73711 * 15 14 12 17 17 C 1.52635 * 109.38294 * 174.46335 * 15 14 12 18 18 S 1.81179 * 109.98828 * 187.01020 * 17 15 14 19 19 C 1.81168 * 103.31418 * 297.38607 * 18 17 15 20 20 C 1.52638 * 109.99051 * 62.62132 * 19 18 17 21 21 S 1.81168 * 109.38279 * 295.00001 * 15 14 12 22 22 C 1.50701 * 109.47282 * 60.00504 * 9 7 2 23 23 C 1.34512 * 125.78640 * 264.71427 * 22 9 7 24 24 C 1.41385 * 106.83888 * 179.88717 * 23 22 9 25 25 C 1.34513 * 106.83956 * 0.36732 * 24 23 22 26 26 O 1.34300 * 108.42251 * 359.77857 * 25 24 23 27 27 H 0.96999 * 120.00108 * 359.97438 * 1 2 3 28 28 H 1.09003 * 109.47389 * 59.99346 * 14 12 11 29 29 H 1.09007 * 109.46949 * 300.00545 * 14 12 11 30 30 H 1.08998 * 109.38498 * 66.85637 * 17 15 14 31 31 H 1.08997 * 109.30196 * 307.11575 * 17 15 14 32 32 H 1.08999 * 109.38702 * 302.45642 * 19 18 17 33 33 H 1.09007 * 109.29408 * 182.71843 * 19 18 17 34 34 H 1.09004 * 109.38423 * 172.99061 * 20 19 18 35 35 H 1.08998 * 109.38967 * 53.30264 * 20 19 18 36 36 H 1.08000 * 126.58222 * 0.02632 * 23 22 9 37 37 H 1.08004 * 126.57602 * 180.12683 * 24 23 22 38 38 H 1.08006 * 125.78590 * 179.78711 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.4966 2.0466 -1.4001 5 1 1.4466 2.6528 0.7001 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2510 -2.4990 -0.0005 10 1 0.6248 -2.5571 0.8896 11 8 2.1946 -3.6027 -0.0018 12 6 1.8038 -4.7392 0.5960 13 8 0.7094 -4.8097 1.1030 14 6 2.7300 -5.9273 0.6347 15 6 2.0469 -7.0830 1.3688 16 1 1.0854 -7.2899 0.8989 17 6 2.9285 -8.3264 1.2875 18 16 2.0480 -9.7554 1.9694 19 6 1.7842 -9.2953 3.7017 20 6 0.9026 -8.0519 3.7829 21 16 1.7831 -6.6227 3.1011 22 6 0.3842 -2.5787 -1.2307 23 6 -0.9158 -2.2403 -1.3002 24 6 -1.3276 -2.4683 -2.6334 25 6 -0.2568 -2.9401 -3.2968 26 8 0.7772 -3.0049 -2.4422 27 1 -0.4850 0.8400 0.0004 28 1 3.6470 -5.6563 1.1581 29 1 2.9701 -6.2342 -0.3833 30 1 3.8428 -8.1595 1.8568 31 1 3.1816 -8.5210 0.2453 32 1 2.7458 -9.0884 4.1715 33 1 1.2966 -10.1191 4.2230 34 1 0.6478 -7.8564 4.8246 35 1 -0.0117 -8.2188 3.2136 36 1 -1.5270 -1.8643 -0.4931 37 1 -2.3140 -2.3000 -3.0400 38 1 -0.2326 -3.2193 -4.3399 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001345547648.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:11:00 Heat of formation + Delta-G solvation = -86.983973 kcal Electronic energy + Delta-G solvation = -23533.712751 eV Core-core repulsion = 19980.918433 eV Total energy + Delta-G solvation = -3552.794319 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.064 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -43.16828 -41.25855 -37.75473 -35.94599 -35.29903 -34.02503 -33.51993 -31.66226 -29.60522 -28.48612 -25.24916 -24.84003 -23.68744 -22.39967 -21.84396 -21.02890 -19.16141 -18.49925 -18.38073 -18.21143 -17.49846 -17.15676 -16.94685 -16.50838 -16.28271 -16.09360 -15.17789 -15.06407 -14.76726 -14.70316 -14.40552 -14.13457 -13.86859 -13.70898 -13.48889 -13.45045 -13.17347 -13.08533 -12.97256 -12.82006 -12.52245 -12.20841 -11.98231 -11.81649 -11.40633 -11.30284 -11.24611 -10.81515 -10.64894 -10.50392 -9.10589 -8.97403 -8.63907 -8.22729 -6.52832 0.49984 0.63775 1.10832 1.29399 1.35579 1.39771 1.41928 1.51908 1.52955 1.90390 2.12038 2.39104 2.42836 3.01358 3.39418 3.53029 3.64268 3.90168 4.00674 4.03942 4.23590 4.26942 4.31789 4.40934 4.45116 4.54688 4.58799 4.60244 4.72159 4.73507 4.77638 5.16963 5.35711 5.43566 5.48024 5.68888 5.85918 5.98956 6.48440 6.60158 6.95584 7.19793 8.72568 Molecular weight = 328.06amu Principal moments of inertia in cm(-1) A = 0.017533 B = 0.003433 C = 0.003140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1596.617660 B = 8154.898133 C = 8914.791749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.025 3.975 3 Si 0.979 3.021 4 H -0.273 1.273 5 H -0.275 1.275 6 H -0.261 1.261 7 C -0.556 4.556 8 H 0.074 0.926 9 C 0.305 3.695 10 H 0.040 0.960 11 O -0.360 6.360 12 C 0.439 3.561 13 O -0.525 6.525 14 C -0.086 4.086 15 C -0.032 4.032 16 H 0.088 0.912 17 C -0.072 4.072 18 S -0.275 6.275 19 C -0.077 4.077 20 C -0.081 4.081 21 S -0.287 6.287 22 C -0.007 4.007 23 C -0.191 4.191 24 C -0.230 4.230 25 C -0.070 4.070 26 O -0.195 6.195 27 H 0.270 0.730 28 H 0.131 0.869 29 H 0.151 0.849 30 H 0.114 0.886 31 H 0.140 0.860 32 H 0.105 0.895 33 H 0.137 0.863 34 H 0.130 0.870 35 H 0.087 0.913 36 H 0.123 0.877 37 H 0.164 0.836 38 H 0.240 0.760 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.727 -17.119 1.928 17.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.179 4.179 3 Si 0.802 3.198 4 H -0.199 1.199 5 H -0.200 1.200 6 H -0.185 1.185 7 C -0.593 4.593 8 H 0.092 0.908 9 C 0.251 3.749 10 H 0.057 0.943 11 O -0.277 6.277 12 C 0.282 3.718 13 O -0.414 6.414 14 C -0.126 4.126 15 C -0.163 4.163 16 H 0.107 0.893 17 C -0.222 4.222 18 S -0.047 6.047 19 C -0.227 4.227 20 C -0.231 4.231 21 S -0.059 6.059 22 C -0.058 4.058 23 C -0.210 4.210 24 C -0.249 4.249 25 C -0.137 4.137 26 O -0.092 6.092 27 H 0.079 0.921 28 H 0.149 0.851 29 H 0.168 0.832 30 H 0.132 0.868 31 H 0.158 0.842 32 H 0.124 0.876 33 H 0.155 0.845 34 H 0.148 0.852 35 H 0.106 0.894 36 H 0.141 0.859 37 H 0.181 0.819 38 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges 4.491 -17.120 2.048 17.817 hybrid contribution -0.617 1.441 0.137 1.573 sum 3.874 -15.679 2.184 16.297 Atomic orbital electron populations 1.70165 1.07205 1.28394 1.46754 1.25811 0.96017 1.02757 0.93267 0.85233 0.78691 0.77304 0.78541 1.19882 1.20014 1.18500 1.21168 0.94160 0.88868 1.55108 0.90803 1.18676 0.85521 0.82670 0.88018 0.94260 1.86509 1.48087 1.22648 1.70429 1.24346 0.87674 0.85323 0.74475 1.90657 1.23968 1.83461 1.43283 1.21331 0.97897 0.87679 1.05652 1.23074 1.02401 0.96636 0.94177 0.89326 1.23594 0.99775 0.91565 1.07308 1.86889 1.76940 1.28499 1.12343 1.23591 1.04011 1.00607 0.94524 1.23574 1.00345 0.93380 1.05754 1.87366 1.76720 1.31686 1.10111 1.23369 0.94711 1.01830 0.85843 1.21335 0.95063 1.06227 0.98407 1.22059 1.01388 1.07481 0.93954 1.24669 0.85130 1.06766 0.97100 1.83954 1.39051 1.67122 1.19053 0.92062 0.85115 0.83186 0.86778 0.84168 0.87644 0.84493 0.85154 0.89408 0.85867 0.81857 0.74359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -50.59 10.50 21.44 0.23 -50.36 16 2 C 0.02 1.36 5.30 84.65 0.45 1.81 16 3 Si 0.98 43.11 29.54 68.60 2.03 45.14 16 4 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 5 H -0.28 -11.67 7.11 99.48 0.71 -10.96 16 6 H -0.26 -11.04 7.11 99.48 0.71 -10.33 16 7 C -0.56 -31.71 8.89 25.60 0.23 -31.48 16 8 H 0.07 4.12 7.81 -2.91 -0.02 4.09 16 9 C 0.31 16.90 2.41 29.10 0.07 16.97 16 10 H 0.04 2.43 7.16 -2.39 -0.02 2.42 16 11 O -0.36 -17.33 9.83 -48.68 -0.48 -17.81 16 12 C 0.44 17.92 7.63 71.24 0.54 18.46 16 13 O -0.52 -24.69 14.00 21.97 0.31 -24.38 16 14 C -0.09 -2.23 5.27 29.85 0.16 -2.07 16 15 C -0.03 -0.77 2.02 30.47 0.06 -0.71 16 16 H 0.09 2.50 7.94 -2.39 -0.02 2.48 16 17 C -0.07 -1.20 5.53 71.86 0.40 -0.80 16 18 S -0.28 -4.99 22.05 -56.49 -1.25 -6.23 16 19 C -0.08 -1.14 6.25 71.86 0.45 -0.69 16 20 C -0.08 -1.56 6.25 71.86 0.45 -1.11 16 21 S -0.29 -7.94 19.85 -56.49 -1.12 -9.06 16 22 C -0.01 -0.38 5.66 24.83 0.14 -0.24 16 23 C -0.19 -9.80 9.05 22.19 0.20 -9.60 16 24 C -0.23 -9.56 10.91 22.19 0.24 -9.32 16 25 C -0.07 -2.71 12.09 66.97 0.81 -1.90 16 26 O -0.19 -9.39 10.63 1.11 0.01 -9.37 16 27 H 0.27 14.46 8.31 -92.71 -0.77 13.69 16 28 H 0.13 2.93 8.14 -2.39 -0.02 2.91 16 29 H 0.15 2.91 8.13 -2.38 -0.02 2.89 16 30 H 0.11 1.62 8.14 -2.40 -0.02 1.60 16 31 H 0.14 1.75 8.12 -2.40 -0.02 1.73 16 32 H 0.11 1.42 8.14 -2.40 -0.02 1.40 16 33 H 0.14 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.13 2.09 8.14 -2.39 -0.02 2.07 16 35 H 0.09 1.86 8.14 -2.40 -0.02 1.84 16 36 H 0.12 6.76 7.51 -2.91 -0.02 6.73 16 37 H 0.16 5.53 8.06 -2.91 -0.02 5.51 16 38 H 0.24 6.19 8.06 -2.91 -0.02 6.17 16 Total: -1.00 -73.19 344.95 4.99 -68.20 By element: Atomic # 1 Polarization: 23.49 SS G_CDS: 1.07 Total: 24.56 kcal Atomic # 6 Polarization: -24.87 SS G_CDS: 4.20 Total: -20.67 kcal Atomic # 7 Polarization: -50.59 SS G_CDS: 0.23 Total: -50.36 kcal Atomic # 8 Polarization: -51.41 SS G_CDS: -0.16 Total: -51.57 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.14 kcal Atomic # 16 Polarization: -12.93 SS G_CDS: -2.37 Total: -15.29 kcal Total: -73.19 4.99 -68.20 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345547648.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.781 kcal (2) G-P(sol) polarization free energy of solvation -73.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds