Wall clock time and date at job start Tue Mar 31 2020 14:47:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 119.99930 * 2 1 4 4 H 1.48503 * 109.47419 * 270.00012 * 3 2 1 5 5 H 1.48503 * 109.47127 * 30.00512 * 3 2 1 6 6 H 1.48505 * 109.47004 * 149.99999 * 3 2 1 7 7 C 1.37877 * 120.00035 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99969 * 359.97438 * 7 2 1 9 9 C 1.50694 * 120.00006 * 180.02562 * 7 2 1 10 10 H 1.09005 * 109.50048 * 60.06187 * 9 7 2 11 11 C 1.53042 * 109.52520 * 180.14175 * 9 7 2 12 12 C 1.53044 * 109.54056 * 181.33311 * 11 9 7 13 13 C 1.53621 * 109.23887 * 298.51106 * 12 11 9 14 14 N 1.46927 * 108.54641 * 54.85704 * 13 12 11 15 15 C 1.34776 * 120.63415 * 126.36556 * 14 13 12 16 16 O 1.21522 * 119.99980 * 175.77677 * 15 14 13 17 17 C 1.48026 * 119.99599 * 355.77834 * 15 14 13 18 18 N 1.32794 * 119.72472 * 42.04426 * 17 15 14 19 19 C 1.31421 * 121.67103 * 179.97438 * 18 17 15 20 20 C 1.38806 * 120.91669 * 359.97438 * 19 18 17 21 21 Cl 1.73606 * 120.32818 * 179.97438 * 20 19 18 22 22 C 1.38654 * 119.34779 * 0.02562 * 20 19 18 23 23 C 1.38738 * 118.46662 * 359.74520 * 22 20 19 24 24 Cl 1.73598 * 120.48247 * 180.24744 * 23 22 20 25 25 C 1.46928 * 118.73392 * 306.09132 * 14 13 12 26 26 H 0.96997 * 120.00076 * 0.02562 * 1 2 3 27 27 H 1.09008 * 109.46007 * 301.35556 * 11 9 7 28 28 H 1.08996 * 109.46217 * 61.30904 * 11 9 7 29 29 H 1.09000 * 109.49510 * 58.58391 * 12 11 9 30 30 H 1.09000 * 109.49726 * 178.65298 * 12 11 9 31 31 H 1.09005 * 109.74305 * 295.11575 * 13 12 11 32 32 H 1.09000 * 109.66287 * 174.55142 * 13 12 11 33 33 H 1.08004 * 119.54487 * 180.02562 * 19 18 17 34 34 H 1.07995 * 120.77181 * 179.97438 * 22 20 19 35 35 H 1.09011 * 109.58348 * 173.64519 * 25 14 13 36 36 H 1.08994 * 109.59021 * 294.07345 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4466 2.6526 0.7002 6 1 3.5467 1.4401 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1940 0.0000 10 1 3.8750 -0.6818 0.8909 11 6 4.0230 -2.6364 -0.0043 12 6 5.5531 -2.6371 0.0299 13 6 6.0877 -1.9311 -1.2254 14 7 5.4867 -0.5924 -1.3004 15 6 6.2628 0.5031 -1.4189 16 8 5.7523 1.5972 -1.5571 17 6 7.7368 0.3734 -1.3806 18 7 8.3273 -0.6226 -2.0307 19 6 9.6328 -0.7737 -2.0229 20 6 10.4489 0.1097 -1.3299 21 17 12.1716 -0.1046 -1.3295 22 6 9.8745 1.1645 -0.6370 23 6 8.4942 1.3018 -0.6670 24 17 7.7207 2.6070 0.1767 25 6 4.0233 -0.4713 -1.2500 26 1 -0.4850 0.8400 -0.0004 27 1 3.6400 -3.1602 0.8716 28 1 3.6797 -3.1408 -0.9075 29 1 5.8973 -2.1112 0.9204 30 1 5.9161 -3.6646 0.0509 31 1 5.8174 -2.5032 -2.1130 32 1 7.1722 -1.8417 -1.1621 33 1 10.0770 -1.5961 -2.5640 34 1 10.4876 1.8652 -0.0898 35 1 3.7452 0.5817 -1.2028 36 1 3.5880 -0.9269 -2.1393 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001347181023.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:49 Heat of formation + Delta-G solvation = 3.798778 kcal Electronic energy + Delta-G solvation = -23697.535162 eV Core-core repulsion = 20041.049722 eV Total energy + Delta-G solvation = -3656.485440 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 328.049 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.15591 -39.30025 -37.31571 -37.04605 -36.78737 -33.66355 -32.84894 -31.99553 -31.48577 -30.42308 -25.98714 -25.21171 -24.35988 -23.69886 -22.03140 -20.49980 -19.02993 -17.79946 -17.68181 -17.07400 -16.72399 -16.11581 -15.38060 -15.23709 -14.42209 -14.33579 -14.15990 -13.99230 -13.70108 -13.35794 -12.95449 -12.91023 -12.75351 -12.43311 -12.21724 -12.16903 -11.97147 -11.33938 -11.25435 -11.08054 -10.61627 -10.50943 -10.34007 -10.14987 -10.04703 -9.78930 -9.64946 -9.30947 -9.19092 -9.10663 -8.61349 -8.12363 -6.11535 -4.13190 0.03245 0.42873 1.27630 1.77903 2.52419 3.03172 3.17976 3.37018 3.45315 3.54845 3.91065 4.05901 4.19929 4.40942 4.41276 4.50941 5.04434 5.20660 5.21512 5.28110 5.37838 5.57337 5.61210 5.91939 6.05843 6.08295 6.15708 6.40017 6.49473 6.61765 6.72298 6.80497 7.06938 7.12122 7.40968 7.68973 7.71247 8.29485 8.48191 8.91834 9.49929 11.00449 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.019654 B = 0.004151 C = 0.003610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1424.318594 B = 6743.991387 C = 7753.550225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.074 3.926 3 Si 0.875 3.125 4 H -0.271 1.271 5 H -0.295 1.295 6 H -0.263 1.263 7 C -0.516 4.516 8 H 0.078 0.922 9 C 0.005 3.995 10 H 0.031 0.969 11 C -0.101 4.101 12 C -0.139 4.139 13 C 0.103 3.897 14 N -0.583 5.583 15 C 0.558 3.442 16 O -0.517 6.517 17 C 0.111 3.889 18 N -0.421 5.421 19 C 0.113 3.887 20 C -0.068 4.068 21 Cl -0.039 7.039 22 C -0.064 4.064 23 C -0.037 4.037 24 Cl -0.010 7.010 25 C 0.102 3.898 26 H 0.265 0.735 27 H 0.060 0.940 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.066 0.934 31 H 0.072 0.928 32 H 0.092 0.908 33 H 0.180 0.820 34 H 0.162 0.838 35 H 0.080 0.920 36 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.796 -1.775 -2.158 24.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.129 4.129 3 Si 0.705 3.295 4 H -0.197 1.197 5 H -0.222 1.222 6 H -0.188 1.188 7 C -0.554 4.554 8 H 0.096 0.904 9 C -0.014 4.014 10 H 0.049 0.951 11 C -0.138 4.138 12 C -0.177 4.177 13 C -0.020 4.020 14 N -0.314 5.314 15 C 0.341 3.659 16 O -0.392 6.392 17 C -0.028 4.028 18 N -0.133 5.133 19 C -0.047 4.047 20 C -0.097 4.097 21 Cl -0.010 7.010 22 C -0.091 4.091 23 C -0.067 4.067 24 Cl 0.020 6.980 25 C -0.018 4.018 26 H 0.075 0.925 27 H 0.078 0.922 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.084 0.916 31 H 0.090 0.910 32 H 0.110 0.890 33 H 0.197 0.803 34 H 0.180 0.820 35 H 0.098 0.902 36 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 23.839 -1.558 -2.611 24.032 hybrid contribution 1.123 1.601 0.480 2.014 sum 24.962 0.043 -2.132 25.053 Atomic orbital electron populations 1.69885 1.06260 1.27165 1.49929 1.25036 0.94746 0.99045 0.94063 0.87048 0.79788 0.83577 0.79128 1.19704 1.22217 1.18758 1.20941 0.88088 0.94660 1.51690 0.90358 1.19497 0.96895 0.92286 0.92770 0.95119 1.21450 0.92021 0.98725 1.01638 1.22113 0.98566 0.99600 0.97420 1.22155 0.98641 0.82566 0.98639 1.48319 1.08311 1.05773 1.68959 1.17677 0.84064 0.85219 0.78907 1.90851 1.73117 1.25762 1.49470 1.21525 0.96181 0.90629 0.94447 1.68150 1.10827 1.17857 1.16433 1.23069 0.88064 0.97923 0.95652 1.22209 0.87305 0.98328 1.01875 1.98411 1.08576 1.96640 1.97345 1.21452 0.92643 0.97231 0.97729 1.21885 0.92718 0.93576 0.98539 1.98461 1.80287 1.44775 1.74521 1.22752 0.74744 1.02696 1.01566 0.92477 0.92174 0.92358 0.92291 0.91574 0.90951 0.89010 0.80321 0.82046 0.90226 0.90934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.32 13.96 55.43 0.77 -26.55 16 2 C 0.07 2.14 5.45 -17.82 -0.10 2.04 16 3 Si 0.88 23.05 24.31 -169.99 -4.13 18.92 16 4 H -0.27 -7.19 6.92 56.52 0.39 -6.80 16 5 H -0.29 -7.73 7.11 56.52 0.40 -7.33 16 6 H -0.26 -6.87 6.53 56.52 0.37 -6.50 16 7 C -0.52 -14.19 9.15 -34.44 -0.32 -14.51 16 8 H 0.08 2.30 7.99 -52.49 -0.42 1.88 16 9 C 0.01 0.12 1.84 -91.65 -0.17 -0.05 16 10 H 0.03 0.75 7.21 -51.93 -0.37 0.38 16 11 C -0.10 -1.88 5.11 -26.69 -0.14 -2.02 16 12 C -0.14 -2.09 6.10 -26.39 -0.16 -2.25 16 13 C 0.10 1.55 6.06 -3.49 -0.02 1.52 16 14 N -0.58 -11.11 2.97 -173.54 -0.51 -11.62 16 15 C 0.56 10.70 7.09 -12.25 -0.09 10.61 16 16 O -0.52 -11.56 14.82 5.35 0.08 -11.48 16 17 C 0.11 1.67 5.95 -82.98 -0.49 1.18 16 18 N -0.42 -5.25 7.39 -9.75 -0.07 -5.32 16 19 C 0.11 1.02 10.98 -17.52 -0.19 0.83 16 20 C -0.07 -0.58 6.35 -39.22 -0.25 -0.83 16 21 Cl -0.04 -0.27 28.99 -51.86 -1.50 -1.77 16 22 C -0.06 -0.61 9.78 -39.24 -0.38 -0.99 16 23 C -0.04 -0.48 6.35 -38.94 -0.25 -0.73 16 24 Cl -0.01 -0.14 26.91 -51.86 -1.40 -1.54 16 25 C 0.10 2.29 5.09 -3.71 -0.02 2.27 16 26 H 0.27 7.65 8.31 -40.82 -0.34 7.31 16 27 H 0.06 1.12 8.14 -51.92 -0.42 0.69 16 28 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 29 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 31 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.09 1.23 4.63 -51.93 -0.24 0.99 16 33 H 0.18 1.03 8.06 -52.48 -0.42 0.60 16 34 H 0.16 1.14 8.06 -52.49 -0.42 0.72 16 35 H 0.08 2.00 2.34 -51.92 -0.12 1.88 16 36 H 0.07 1.59 8.14 -51.93 -0.42 1.17 16 LS Contribution 320.63 15.07 4.83 4.83 Total: -1.00 -32.14 320.63 -8.22 -40.36 By element: Atomic # 1 Polarization: 0.82 SS G_CDS: -3.72 Total: -2.90 kcal Atomic # 6 Polarization: -0.35 SS G_CDS: -2.57 Total: -2.92 kcal Atomic # 7 Polarization: -43.69 SS G_CDS: 0.19 Total: -43.50 kcal Atomic # 8 Polarization: -11.56 SS G_CDS: 0.08 Total: -11.48 kcal Atomic # 14 Polarization: 23.05 SS G_CDS: -4.13 Total: 18.92 kcal Atomic # 17 Polarization: -0.41 SS G_CDS: -2.90 Total: -3.31 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -32.14 -8.22 -40.36 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347181023.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.160 kcal (2) G-P(sol) polarization free energy of solvation -32.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.362 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds