Wall clock time and date at job start Tue Mar 31 2020 14:47:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 119.99930 * 2 1 4 4 H 1.48503 * 109.47419 * 270.00012 * 3 2 1 5 5 H 1.48503 * 109.47127 * 30.00512 * 3 2 1 6 6 H 1.48505 * 109.47004 * 149.99999 * 3 2 1 7 7 C 1.37877 * 120.00035 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99969 * 359.97438 * 7 2 1 9 9 C 1.50694 * 120.00006 * 180.02562 * 7 2 1 10 10 H 1.09005 * 109.50048 * 60.06187 * 9 7 2 11 11 C 1.53042 * 109.52520 * 180.14175 * 9 7 2 12 12 C 1.53044 * 109.54056 * 181.33311 * 11 9 7 13 13 C 1.53621 * 109.23887 * 298.51106 * 12 11 9 14 14 N 1.46927 * 108.54641 * 54.85704 * 13 12 11 15 15 C 1.34776 * 120.63415 * 126.36556 * 14 13 12 16 16 O 1.21522 * 119.99980 * 175.77677 * 15 14 13 17 17 C 1.48026 * 119.99599 * 355.77834 * 15 14 13 18 18 N 1.32794 * 119.72472 * 42.04426 * 17 15 14 19 19 C 1.31421 * 121.67103 * 179.97438 * 18 17 15 20 20 C 1.38806 * 120.91669 * 359.97438 * 19 18 17 21 21 Cl 1.73606 * 120.32818 * 179.97438 * 20 19 18 22 22 C 1.38654 * 119.34779 * 0.02562 * 20 19 18 23 23 C 1.38738 * 118.46662 * 359.74520 * 22 20 19 24 24 Cl 1.73598 * 120.48247 * 180.24744 * 23 22 20 25 25 C 1.46928 * 118.73392 * 306.09132 * 14 13 12 26 26 H 0.96997 * 120.00076 * 0.02562 * 1 2 3 27 27 H 1.09008 * 109.46007 * 301.35556 * 11 9 7 28 28 H 1.08996 * 109.46217 * 61.30904 * 11 9 7 29 29 H 1.09000 * 109.49510 * 58.58391 * 12 11 9 30 30 H 1.09000 * 109.49726 * 178.65298 * 12 11 9 31 31 H 1.09005 * 109.74305 * 295.11575 * 13 12 11 32 32 H 1.09000 * 109.66287 * 174.55142 * 13 12 11 33 33 H 1.08004 * 119.54487 * 180.02562 * 19 18 17 34 34 H 1.07995 * 120.77181 * 179.97438 * 22 20 19 35 35 H 1.09011 * 109.58348 * 173.64519 * 25 14 13 36 36 H 1.08994 * 109.59021 * 294.07345 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4466 2.6526 0.7002 6 1 3.5467 1.4401 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1940 0.0000 10 1 3.8750 -0.6818 0.8909 11 6 4.0230 -2.6364 -0.0043 12 6 5.5531 -2.6371 0.0299 13 6 6.0877 -1.9311 -1.2254 14 7 5.4867 -0.5924 -1.3004 15 6 6.2628 0.5031 -1.4189 16 8 5.7523 1.5972 -1.5571 17 6 7.7368 0.3734 -1.3806 18 7 8.3273 -0.6226 -2.0307 19 6 9.6328 -0.7737 -2.0229 20 6 10.4489 0.1097 -1.3299 21 17 12.1716 -0.1046 -1.3295 22 6 9.8745 1.1645 -0.6370 23 6 8.4942 1.3018 -0.6670 24 17 7.7207 2.6070 0.1767 25 6 4.0233 -0.4713 -1.2500 26 1 -0.4850 0.8400 -0.0004 27 1 3.6400 -3.1602 0.8716 28 1 3.6797 -3.1408 -0.9075 29 1 5.8973 -2.1112 0.9204 30 1 5.9161 -3.6646 0.0509 31 1 5.8174 -2.5032 -2.1130 32 1 7.1722 -1.8417 -1.1621 33 1 10.0770 -1.5961 -2.5640 34 1 10.4876 1.8652 -0.0898 35 1 3.7452 0.5817 -1.2028 36 1 3.5880 -0.9269 -2.1393 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001347181023.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:49 Heat of formation + Delta-G solvation = -16.852240 kcal Electronic energy + Delta-G solvation = -23698.430657 eV Core-core repulsion = 20041.049722 eV Total energy + Delta-G solvation = -3657.380935 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 328.049 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.20061 -40.59524 -38.61946 -37.95026 -37.80076 -35.40507 -34.04382 -33.48833 -32.57997 -32.01029 -27.41759 -26.92936 -25.30997 -24.83208 -23.58147 -21.91923 -20.52217 -19.09797 -18.83048 -18.55067 -18.02159 -17.45771 -16.69362 -16.36107 -16.05042 -15.63926 -15.50467 -15.33206 -14.96382 -14.71444 -14.60064 -14.25439 -13.93557 -13.76198 -13.55175 -13.31162 -13.07873 -12.84627 -12.70220 -12.35440 -12.24830 -12.14656 -11.80403 -11.61590 -11.52147 -11.27864 -11.07843 -10.95338 -10.81744 -10.59361 -10.19663 -9.65890 -8.39975 -6.41707 -0.88738 -0.36886 0.49440 0.89885 1.21761 1.28376 1.32762 1.39262 1.73589 2.16785 2.20001 2.82669 2.97120 3.25141 3.37139 3.45786 3.72790 3.93901 4.09530 4.14135 4.22642 4.41713 4.47949 4.52189 4.59627 4.73375 4.82875 4.95198 4.97412 5.12227 5.18520 5.33746 5.50251 5.60166 5.66737 6.17594 6.24706 6.31134 6.66951 6.89042 7.23932 8.76037 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.019654 B = 0.004151 C = 0.003610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1424.318594 B = 6743.991387 C = 7753.550225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.031 3.969 3 Si 0.930 3.070 4 H -0.279 1.279 5 H -0.293 1.293 6 H -0.265 1.265 7 C -0.509 4.509 8 H 0.053 0.947 9 C 0.005 3.995 10 H 0.015 0.985 11 C -0.098 4.098 12 C -0.129 4.129 13 C 0.100 3.900 14 N -0.589 5.589 15 C 0.551 3.449 16 O -0.561 6.561 17 C 0.088 3.912 18 N -0.431 5.431 19 C 0.126 3.874 20 C -0.053 4.053 21 Cl -0.012 7.012 22 C -0.053 4.053 23 C -0.046 4.046 24 Cl -0.035 7.035 25 C 0.109 3.891 26 H 0.267 0.733 27 H 0.058 0.942 28 H 0.062 0.938 29 H 0.054 0.946 30 H 0.108 0.892 31 H 0.087 0.913 32 H 0.116 0.884 33 H 0.219 0.781 34 H 0.188 0.812 35 H 0.051 0.949 36 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.212 -3.290 -2.565 29.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.168 4.168 3 Si 0.759 3.241 4 H -0.206 1.206 5 H -0.221 1.221 6 H -0.190 1.190 7 C -0.548 4.548 8 H 0.072 0.928 9 C -0.014 4.014 10 H 0.033 0.967 11 C -0.135 4.135 12 C -0.167 4.167 13 C -0.021 4.021 14 N -0.319 5.319 15 C 0.337 3.663 16 O -0.439 6.439 17 C -0.049 4.049 18 N -0.143 5.143 19 C -0.035 4.035 20 C -0.082 4.082 21 Cl 0.017 6.983 22 C -0.079 4.079 23 C -0.076 4.076 24 Cl -0.006 7.006 25 C -0.012 4.012 26 H 0.077 0.923 27 H 0.077 0.923 28 H 0.081 0.919 29 H 0.073 0.927 30 H 0.126 0.874 31 H 0.105 0.895 32 H 0.133 0.867 33 H 0.235 0.765 34 H 0.205 0.795 35 H 0.069 0.931 36 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 28.288 -3.100 -3.010 28.616 hybrid contribution -0.051 1.955 0.559 2.034 sum 28.238 -1.145 -2.451 28.367 Atomic orbital electron populations 1.69977 1.07466 1.27860 1.52322 1.25590 0.95153 1.01522 0.94522 0.86177 0.78493 0.80957 0.78432 1.20594 1.22060 1.19032 1.21287 0.90682 0.93290 1.49544 0.92849 1.19423 0.94002 0.95535 0.92477 0.96697 1.21387 0.95052 0.95255 1.01829 1.22064 0.95267 1.02072 0.97256 1.22456 0.99840 0.80531 0.99227 1.48332 1.06818 1.07679 1.69071 1.18297 0.86070 0.84354 0.77559 1.90809 1.74610 1.27338 1.51176 1.20841 0.93744 0.92987 0.97317 1.68055 1.12589 1.17291 1.16365 1.23694 0.86744 0.98381 0.94676 1.22282 0.88595 0.97177 1.00175 1.98439 1.06345 1.96416 1.97086 1.21697 0.91159 0.97762 0.97306 1.21937 0.93883 0.92841 0.98970 1.98451 1.81035 1.45983 1.75112 1.22242 0.77678 1.00538 1.00778 0.92339 0.92298 0.91947 0.92728 0.87400 0.89497 0.86653 0.76470 0.79522 0.93100 0.91182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.05 13.96 21.45 0.30 -58.75 16 2 C 0.03 1.85 5.45 84.65 0.46 2.31 16 3 Si 0.93 49.98 24.31 68.60 1.67 51.64 16 4 H -0.28 -15.22 6.92 99.48 0.69 -14.53 16 5 H -0.29 -15.44 7.11 99.48 0.71 -14.73 16 6 H -0.27 -14.17 6.53 99.48 0.65 -13.52 16 7 C -0.51 -28.87 9.15 25.60 0.23 -28.64 16 8 H 0.05 3.24 7.99 -2.91 -0.02 3.21 16 9 C 0.01 0.24 1.84 -11.46 -0.02 0.22 16 10 H 0.01 0.75 7.21 -2.38 -0.02 0.73 16 11 C -0.10 -3.53 5.11 30.62 0.16 -3.37 16 12 C -0.13 -3.49 6.10 30.82 0.19 -3.30 16 13 C 0.10 2.75 6.06 86.51 0.52 3.27 16 14 N -0.59 -22.09 2.97 -821.26 -2.44 -24.52 16 15 C 0.55 21.07 7.09 86.84 0.62 21.69 16 16 O -0.56 -25.77 14.82 -3.78 -0.06 -25.83 16 17 C 0.09 2.51 5.95 41.89 0.25 2.76 16 18 N -0.43 -9.35 7.39 -184.75 -1.36 -10.71 16 19 C 0.13 1.68 10.98 84.89 0.93 2.61 16 20 C -0.05 -0.67 6.35 22.51 0.14 -0.52 16 21 Cl -0.01 -0.11 28.99 -2.72 -0.08 -0.19 16 22 C -0.05 -0.84 9.78 22.49 0.22 -0.62 16 23 C -0.05 -1.13 6.35 22.68 0.14 -0.99 16 24 Cl -0.03 -1.02 26.91 -2.72 -0.07 -1.10 16 25 C 0.11 4.97 5.09 86.36 0.44 5.41 16 26 H 0.27 15.94 8.31 -92.71 -0.77 15.17 16 27 H 0.06 2.12 8.14 -2.38 -0.02 2.10 16 28 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 29 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.11 2.11 8.14 -2.39 -0.02 2.09 16 31 H 0.09 2.15 8.14 -2.38 -0.02 2.13 16 32 H 0.12 2.67 4.63 -2.39 -0.01 2.66 16 33 H 0.22 1.17 8.06 -2.91 -0.02 1.14 16 34 H 0.19 1.94 8.06 -2.91 -0.02 1.92 16 35 H 0.05 2.62 2.34 -2.38 -0.01 2.62 16 36 H 0.07 3.14 8.14 -2.39 -0.02 3.12 16 Total: -1.00 -74.09 320.63 3.30 -70.79 By element: Atomic # 1 Polarization: -3.24 SS G_CDS: 1.05 Total: -2.19 kcal Atomic # 6 Polarization: -3.44 SS G_CDS: 4.29 Total: 0.85 kcal Atomic # 7 Polarization: -90.49 SS G_CDS: -3.50 Total: -93.99 kcal Atomic # 8 Polarization: -25.77 SS G_CDS: -0.06 Total: -25.83 kcal Atomic # 14 Polarization: 49.98 SS G_CDS: 1.67 Total: 51.64 kcal Atomic # 17 Polarization: -1.13 SS G_CDS: -0.15 Total: -1.28 kcal Total: -74.09 3.30 -70.79 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347181023.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.938 kcal (2) G-P(sol) polarization free energy of solvation -74.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds