Wall clock time and date at job start Tue Mar 31 2020 14:47:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86792 * 120.00206 * 2 1 4 4 H 1.48503 * 109.47530 * 270.00635 * 3 2 1 5 5 H 1.48506 * 109.47107 * 30.00791 * 3 2 1 6 6 H 1.48502 * 109.47020 * 150.00310 * 3 2 1 7 7 C 1.37880 * 119.99549 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99875 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00454 * 359.97438 * 7 2 1 10 10 H 1.08997 * 109.49848 * 300.07061 * 9 7 2 11 11 C 1.53042 * 109.49864 * 180.02562 * 9 7 2 12 12 C 1.53041 * 109.53569 * 178.68354 * 11 9 7 13 13 C 1.53195 * 109.31313 * 61.36707 * 12 11 9 14 14 N 1.46929 * 108.89245 * 305.29183 * 13 12 11 15 15 C 1.34769 * 120.63125 * 233.67587 * 14 13 12 16 16 O 1.21539 * 119.99911 * 356.12309 * 15 14 13 17 17 C 1.48018 * 120.00301 * 176.12367 * 15 14 13 18 18 N 1.32797 * 119.72373 * 40.71147 * 17 15 14 19 19 C 1.31426 * 121.67167 * 179.97438 * 18 17 15 20 20 C 1.38802 * 120.91733 * 0.02562 * 19 18 17 21 21 Cl 1.73603 * 120.32661 * 179.97438 * 20 19 18 22 22 C 1.38659 * 119.34898 * 359.97438 * 20 19 18 23 23 C 1.38743 * 118.45915 * 359.74599 * 22 20 19 24 24 Cl 1.73602 * 120.47213 * 180.24550 * 23 22 20 25 25 C 1.47209 * 118.55447 * 53.53940 * 14 13 12 26 26 H 0.97000 * 119.99807 * 359.97438 * 1 2 3 27 27 H 1.08994 * 109.45863 * 58.66471 * 11 9 7 28 28 H 1.08996 * 109.44699 * 298.70001 * 11 9 7 29 29 H 1.08992 * 109.49910 * 301.41329 * 12 11 9 30 30 H 1.09001 * 109.49714 * 181.31422 * 12 11 9 31 31 H 1.09003 * 109.58704 * 65.14928 * 13 12 11 32 32 H 1.08997 * 109.58610 * 185.43225 * 13 12 11 33 33 H 1.08001 * 119.54044 * 179.97438 * 19 18 17 34 34 H 1.07995 * 120.76711 * 180.02562 * 22 20 19 35 35 H 1.08994 * 109.53164 * 186.67363 * 25 14 13 36 36 H 1.08993 * 109.67645 * 66.36788 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4467 2.6526 0.7002 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1942 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 1 0.6236 -2.5571 0.8889 11 6 2.2450 -3.6629 -0.0005 12 6 1.4809 -4.9885 0.0326 13 6 0.6056 -5.1003 -1.2197 14 7 -0.2553 -3.9128 -1.3059 15 6 -1.5914 -4.0408 -1.4277 16 8 -2.0886 -5.1443 -1.5381 17 6 -2.4533 -2.8374 -1.4270 18 7 -2.0661 -1.7498 -2.0834 19 6 -2.8013 -0.6607 -2.1086 20 6 -4.0189 -0.6067 -1.4445 21 17 -4.9774 0.8401 -1.4875 22 6 -4.4622 -1.7196 -0.7463 23 6 -3.6678 -2.8571 -0.7421 24 17 -4.1752 -4.2821 0.1097 25 6 0.3731 -2.5827 -1.2532 26 1 -0.4850 0.8401 0.0004 27 1 2.8872 -3.5919 0.8773 28 1 2.8559 -3.6183 -0.9020 29 1 0.8507 -5.0231 0.9212 30 1 2.1896 -5.8164 0.0561 31 1 1.2395 -5.1571 -2.1047 32 1 -0.0123 -5.9958 -1.1548 33 1 -2.4528 0.2045 -2.6530 34 1 -5.4061 -1.7029 -0.2218 35 1 -0.4001 -1.8158 -1.2093 36 1 0.9875 -2.4317 -2.1407 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001347181024.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:52 Heat of formation + Delta-G solvation = -6.269265 kcal Electronic energy + Delta-G solvation = -24093.983435 eV Core-core repulsion = 20437.061412 eV Total energy + Delta-G solvation = -3656.922023 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 328.049 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.60021 -38.90219 -36.90455 -36.63140 -36.41313 -33.22224 -32.74451 -31.82941 -30.89124 -29.71782 -25.52795 -25.03492 -23.82651 -23.51476 -21.76769 -20.24723 -18.86031 -17.31559 -17.16332 -16.52899 -16.30902 -15.66798 -14.89508 -14.79066 -14.55573 -13.99490 -13.88277 -13.60996 -13.24167 -12.99071 -12.79713 -12.43816 -12.33958 -12.11379 -11.91075 -11.67223 -11.51221 -11.05466 -10.96952 -10.89303 -10.56306 -10.39200 -10.27120 -10.05882 -9.85042 -9.59773 -9.49126 -9.08816 -8.78089 -8.75543 -8.48347 -7.83042 -6.12322 -4.16665 0.61498 1.04240 1.76717 2.21912 2.94340 3.23747 3.31582 3.34392 3.40385 3.80141 4.34175 4.46886 4.63527 4.70489 4.96474 5.09588 5.21572 5.48089 5.57489 5.65470 5.76580 5.77629 6.07537 6.21382 6.25922 6.36654 6.51830 6.65205 6.78713 6.94316 7.00095 7.27531 7.54923 7.72137 7.78534 7.91586 8.06884 8.33193 8.61550 8.86025 9.48379 10.94027 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.009325 B = 0.006821 C = 0.004268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3002.031889 B = 4104.074520 C = 6559.369032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.066 3.934 3 Si 0.891 3.109 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.513 4.513 8 H 0.058 0.942 9 C 0.036 3.964 10 H 0.027 0.973 11 C -0.112 4.112 12 C -0.133 4.133 13 C 0.113 3.887 14 N -0.582 5.582 15 C 0.566 3.434 16 O -0.542 6.542 17 C 0.117 3.883 18 N -0.396 5.396 19 C 0.135 3.865 20 C -0.064 4.064 21 Cl -0.049 7.049 22 C -0.068 4.068 23 C -0.038 4.038 24 Cl -0.027 7.027 25 C 0.095 3.905 26 H 0.260 0.740 27 H 0.051 0.949 28 H 0.050 0.950 29 H 0.059 0.941 30 H 0.061 0.939 31 H 0.063 0.937 32 H 0.082 0.918 33 H 0.173 0.827 34 H 0.156 0.844 35 H 0.142 0.858 36 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.094 -2.426 -2.626 8.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.136 4.136 3 Si 0.719 3.281 4 H -0.206 1.206 5 H -0.213 1.213 6 H -0.200 1.200 7 C -0.552 4.552 8 H 0.076 0.924 9 C 0.017 3.983 10 H 0.045 0.955 11 C -0.150 4.150 12 C -0.171 4.171 13 C -0.009 4.009 14 N -0.312 5.312 15 C 0.351 3.649 16 O -0.420 6.420 17 C -0.022 4.022 18 N -0.107 5.107 19 C -0.025 4.025 20 C -0.093 4.093 21 Cl -0.020 7.020 22 C -0.095 4.095 23 C -0.068 4.068 24 Cl 0.002 6.998 25 C -0.025 4.025 26 H 0.070 0.930 27 H 0.070 0.930 28 H 0.069 0.931 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.082 0.918 32 H 0.100 0.900 33 H 0.190 0.810 34 H 0.173 0.827 35 H 0.159 0.841 36 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -7.793 -2.931 -3.049 8.866 hybrid contribution -0.346 1.259 0.659 1.463 sum -8.139 -1.672 -2.390 8.646 Atomic orbital electron populations 1.69836 1.05763 1.26472 1.50340 1.24948 0.94903 0.99026 0.94675 0.86601 0.79925 0.83396 0.78134 1.20609 1.21274 1.20021 1.21089 0.92993 0.90037 1.51046 0.92367 1.19024 0.92854 0.92490 0.93914 0.95481 1.21644 0.98560 0.94125 1.00634 1.21946 0.98557 0.99028 0.97589 1.21563 0.92851 0.88440 0.98086 1.48478 1.04647 1.10046 1.68067 1.17671 0.82501 0.86756 0.77950 1.90759 1.74156 1.25440 1.51678 1.21200 0.91922 0.93961 0.95118 1.68156 1.28601 0.98068 1.15895 1.22895 0.87824 0.96732 0.95098 1.22152 0.95523 0.89506 1.02162 1.98380 1.70723 1.35552 1.97331 1.21274 1.00432 0.89871 0.97950 1.21715 0.95420 0.90582 0.99103 1.98400 1.90170 1.36511 1.74754 1.22953 0.99838 0.80785 0.98958 0.93001 0.93008 0.93086 0.92183 0.92012 0.91847 0.89964 0.80981 0.82662 0.84110 0.93239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.57 11.40 55.43 0.63 -21.94 16 2 C 0.07 1.69 5.30 -17.82 -0.09 1.59 16 3 Si 0.89 19.99 29.54 -169.99 -5.02 14.97 16 4 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 5 H -0.29 -6.47 7.11 56.52 0.40 -6.06 16 6 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 7 C -0.51 -13.07 8.56 -34.44 -0.29 -13.37 16 8 H 0.06 1.48 7.74 -52.48 -0.41 1.07 16 9 C 0.04 0.85 2.25 -91.65 -0.21 0.65 16 10 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 11 C -0.11 -2.20 5.11 -26.69 -0.14 -2.34 16 12 C -0.13 -2.26 6.08 -26.61 -0.16 -2.43 16 13 C 0.11 1.99 6.41 -3.71 -0.02 1.97 16 14 N -0.58 -11.90 2.98 -173.59 -0.52 -12.42 16 15 C 0.57 11.67 7.13 -12.25 -0.09 11.58 16 16 O -0.54 -11.52 14.74 5.33 0.08 -11.44 16 17 C 0.12 2.26 5.99 -82.99 -0.50 1.76 16 18 N -0.40 -7.48 7.33 -9.75 -0.07 -7.55 16 19 C 0.13 2.16 10.98 -17.52 -0.19 1.97 16 20 C -0.06 -0.91 6.35 -39.22 -0.25 -1.16 16 21 Cl -0.05 -0.58 28.99 -51.86 -1.50 -2.09 16 22 C -0.07 -0.97 9.78 -39.24 -0.38 -1.36 16 23 C -0.04 -0.64 6.35 -38.94 -0.25 -0.89 16 24 Cl -0.03 -0.44 26.86 -51.86 -1.39 -1.83 16 25 C 0.09 2.12 5.01 -3.56 -0.02 2.11 16 26 H 0.26 6.40 8.31 -40.82 -0.34 6.06 16 27 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 28 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 29 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 30 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 31 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.08 1.41 7.02 -51.93 -0.36 1.05 16 33 H 0.17 2.40 8.06 -52.49 -0.42 1.98 16 34 H 0.16 1.75 8.06 -52.49 -0.42 1.33 16 35 H 0.14 3.28 2.75 -51.93 -0.14 3.13 16 36 H 0.05 1.14 8.14 -51.93 -0.42 0.71 16 LS Contribution 327.40 15.07 4.93 4.93 Total: -1.00 -27.21 327.40 -9.31 -36.52 By element: Atomic # 1 Polarization: 4.61 SS G_CDS: -3.85 Total: 0.75 kcal Atomic # 6 Polarization: 2.68 SS G_CDS: -2.59 Total: 0.09 kcal Atomic # 7 Polarization: -41.95 SS G_CDS: 0.04 Total: -41.91 kcal Atomic # 8 Polarization: -11.52 SS G_CDS: 0.08 Total: -11.44 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -5.02 Total: 14.97 kcal Atomic # 17 Polarization: -1.03 SS G_CDS: -2.90 Total: -3.92 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -27.21 -9.31 -36.52 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347181024.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.253 kcal (2) G-P(sol) polarization free energy of solvation -27.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds