Wall clock time and date at job start Tue Mar 31 2020 14:47:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86792 * 120.00206 * 2 1 4 4 H 1.48503 * 109.47530 * 270.00635 * 3 2 1 5 5 H 1.48506 * 109.47107 * 30.00791 * 3 2 1 6 6 H 1.48502 * 109.47020 * 150.00310 * 3 2 1 7 7 C 1.37880 * 119.99549 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99875 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00454 * 359.97438 * 7 2 1 10 10 H 1.08997 * 109.49848 * 300.07061 * 9 7 2 11 11 C 1.53042 * 109.49864 * 180.02562 * 9 7 2 12 12 C 1.53041 * 109.53569 * 178.68354 * 11 9 7 13 13 C 1.53195 * 109.31313 * 61.36707 * 12 11 9 14 14 N 1.46929 * 108.89245 * 305.29183 * 13 12 11 15 15 C 1.34769 * 120.63125 * 233.67587 * 14 13 12 16 16 O 1.21539 * 119.99911 * 356.12309 * 15 14 13 17 17 C 1.48018 * 120.00301 * 176.12367 * 15 14 13 18 18 N 1.32797 * 119.72373 * 40.71147 * 17 15 14 19 19 C 1.31426 * 121.67167 * 179.97438 * 18 17 15 20 20 C 1.38802 * 120.91733 * 0.02562 * 19 18 17 21 21 Cl 1.73603 * 120.32661 * 179.97438 * 20 19 18 22 22 C 1.38659 * 119.34898 * 359.97438 * 20 19 18 23 23 C 1.38743 * 118.45915 * 359.74599 * 22 20 19 24 24 Cl 1.73602 * 120.47213 * 180.24550 * 23 22 20 25 25 C 1.47209 * 118.55447 * 53.53940 * 14 13 12 26 26 H 0.97000 * 119.99807 * 359.97438 * 1 2 3 27 27 H 1.08994 * 109.45863 * 58.66471 * 11 9 7 28 28 H 1.08996 * 109.44699 * 298.70001 * 11 9 7 29 29 H 1.08992 * 109.49910 * 301.41329 * 12 11 9 30 30 H 1.09001 * 109.49714 * 181.31422 * 12 11 9 31 31 H 1.09003 * 109.58704 * 65.14928 * 13 12 11 32 32 H 1.08997 * 109.58610 * 185.43225 * 13 12 11 33 33 H 1.08001 * 119.54044 * 179.97438 * 19 18 17 34 34 H 1.07995 * 120.76711 * 180.02562 * 22 20 19 35 35 H 1.08994 * 109.53164 * 186.67363 * 25 14 13 36 36 H 1.08993 * 109.67645 * 66.36788 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4467 2.6526 0.7002 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1942 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 1 0.6236 -2.5571 0.8889 11 6 2.2450 -3.6629 -0.0005 12 6 1.4809 -4.9885 0.0326 13 6 0.6056 -5.1003 -1.2197 14 7 -0.2553 -3.9128 -1.3059 15 6 -1.5914 -4.0408 -1.4277 16 8 -2.0886 -5.1443 -1.5381 17 6 -2.4533 -2.8374 -1.4270 18 7 -2.0661 -1.7498 -2.0834 19 6 -2.8013 -0.6607 -2.1086 20 6 -4.0189 -0.6067 -1.4445 21 17 -4.9774 0.8401 -1.4875 22 6 -4.4622 -1.7196 -0.7463 23 6 -3.6678 -2.8571 -0.7421 24 17 -4.1752 -4.2821 0.1097 25 6 0.3731 -2.5827 -1.2532 26 1 -0.4850 0.8401 0.0004 27 1 2.8872 -3.5919 0.8773 28 1 2.8559 -3.6183 -0.9020 29 1 0.8507 -5.0231 0.9212 30 1 2.1896 -5.8164 0.0561 31 1 1.2395 -5.1571 -2.1047 32 1 -0.0123 -5.9958 -1.1548 33 1 -2.4528 0.2045 -2.6530 34 1 -5.4061 -1.7029 -0.2218 35 1 -0.4001 -1.8158 -1.2093 36 1 0.9875 -2.4317 -2.1407 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001347181024.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:52 Heat of formation + Delta-G solvation = -19.647387 kcal Electronic energy + Delta-G solvation = -24094.563554 eV Core-core repulsion = 20437.061412 eV Total energy + Delta-G solvation = -3657.502142 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 328.049 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.97177 -40.36526 -38.42773 -37.84176 -37.68047 -35.04247 -34.11502 -33.26444 -32.29174 -31.37051 -27.08637 -26.80294 -25.17660 -24.88447 -23.33316 -21.83653 -20.37927 -18.80596 -18.44951 -18.19454 -17.82545 -17.19161 -16.50721 -16.25989 -16.09632 -15.44256 -15.28291 -15.01631 -14.65218 -14.54245 -14.38391 -13.89326 -13.76933 -13.52944 -13.40689 -13.04187 -12.83497 -12.68154 -12.52472 -12.27411 -12.19424 -12.16568 -11.79903 -11.63877 -11.34097 -11.14230 -10.87271 -10.81417 -10.50464 -10.23867 -10.02058 -9.45256 -8.04414 -6.15577 -0.68726 -0.17538 0.57611 0.99378 1.45103 1.47515 1.48983 1.56086 1.95910 2.44888 2.48204 3.03594 3.24657 3.43513 3.50705 3.67352 3.87661 4.08260 4.13553 4.29731 4.37709 4.60752 4.61340 4.71699 4.83833 4.88152 5.01422 5.09530 5.21119 5.28792 5.36047 5.61434 5.69221 5.92982 6.08489 6.31307 6.42787 6.55605 6.89889 7.06061 7.51355 9.00036 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.009325 B = 0.006821 C = 0.004268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3002.031889 B = 4104.074520 C = 6559.369032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.029 3.971 3 Si 0.946 3.054 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.277 1.277 7 C -0.536 4.536 8 H 0.053 0.947 9 C 0.037 3.963 10 H -0.011 1.011 11 C -0.108 4.108 12 C -0.123 4.123 13 C 0.108 3.892 14 N -0.589 5.589 15 C 0.561 3.439 16 O -0.555 6.555 17 C 0.086 3.914 18 N -0.421 5.421 19 C 0.125 3.875 20 C -0.054 4.054 21 Cl -0.020 7.020 22 C -0.059 4.059 23 C -0.045 4.045 24 Cl -0.025 7.025 25 C 0.104 3.896 26 H 0.262 0.738 27 H 0.051 0.949 28 H 0.056 0.944 29 H 0.047 0.953 30 H 0.099 0.901 31 H 0.080 0.920 32 H 0.087 0.913 33 H 0.188 0.812 34 H 0.188 0.812 35 H 0.137 0.863 36 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.602 -1.842 -2.717 9.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.172 4.172 3 Si 0.773 3.227 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.202 1.202 7 C -0.575 4.575 8 H 0.071 0.929 9 C 0.017 3.983 10 H 0.007 0.993 11 C -0.145 4.145 12 C -0.161 4.161 13 C -0.014 4.014 14 N -0.318 5.318 15 C 0.347 3.653 16 O -0.435 6.435 17 C -0.053 4.053 18 N -0.133 5.133 19 C -0.036 4.036 20 C -0.084 4.084 21 Cl 0.009 6.991 22 C -0.086 4.086 23 C -0.076 4.076 24 Cl 0.004 6.996 25 C -0.017 4.017 26 H 0.071 0.929 27 H 0.070 0.930 28 H 0.075 0.925 29 H 0.066 0.934 30 H 0.118 0.882 31 H 0.098 0.902 32 H 0.106 0.894 33 H 0.205 0.795 34 H 0.206 0.794 35 H 0.154 0.846 36 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -8.300 -2.363 -3.139 9.183 hybrid contribution -0.267 1.159 0.693 1.377 sum -8.567 -1.204 -2.446 8.991 Atomic orbital electron populations 1.69936 1.06441 1.27011 1.50017 1.25555 0.95724 1.01491 0.94422 0.85744 0.78685 0.80154 0.78106 1.20124 1.21140 1.20201 1.21338 0.92961 0.91354 1.51825 0.92904 1.18940 0.93149 0.93486 0.92677 0.99320 1.21553 0.97933 0.94175 1.00860 1.21878 0.98679 0.98749 0.96761 1.21774 0.92920 0.87635 0.99066 1.48516 1.05088 1.10071 1.68168 1.17963 0.82619 0.87284 0.77435 1.90726 1.74315 1.26072 1.52367 1.21114 0.92935 0.93986 0.97221 1.68028 1.29841 0.98730 1.16684 1.23212 0.88448 0.96407 0.95487 1.22169 0.95057 0.90414 1.00739 1.98395 1.69778 1.33856 1.97116 1.21613 1.01019 0.88685 0.97245 1.21841 0.95165 0.91537 0.99019 1.98394 1.89980 1.36594 1.74601 1.22647 0.99410 0.81968 0.97666 0.92904 0.93022 0.92515 0.93375 0.88245 0.90225 0.89427 0.79484 0.79433 0.84632 0.94425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -45.81 11.40 21.45 0.24 -45.57 16 2 C 0.03 1.47 5.30 84.65 0.45 1.92 16 3 Si 0.95 40.83 29.54 68.60 2.03 42.85 16 4 H -0.28 -11.63 7.11 99.48 0.71 -10.92 16 5 H -0.29 -12.19 7.11 99.48 0.71 -11.48 16 6 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 7 C -0.54 -27.67 8.56 25.60 0.22 -27.45 16 8 H 0.05 2.71 7.74 -2.91 -0.02 2.69 16 9 C 0.04 1.76 2.25 -11.46 -0.03 1.73 16 10 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 11 C -0.11 -4.20 5.11 30.62 0.16 -4.04 16 12 C -0.12 -4.03 6.08 30.67 0.19 -3.85 16 13 C 0.11 3.71 6.41 86.36 0.55 4.26 16 14 N -0.59 -24.29 2.98 -821.40 -2.45 -26.74 16 15 C 0.56 23.40 7.13 86.84 0.62 24.02 16 16 O -0.56 -23.71 14.74 -3.84 -0.06 -23.76 16 17 C 0.09 3.33 5.99 41.89 0.25 3.58 16 18 N -0.42 -16.02 7.33 -184.77 -1.35 -17.37 16 19 C 0.13 3.92 10.98 84.89 0.93 4.85 16 20 C -0.05 -1.45 6.35 22.51 0.14 -1.31 16 21 Cl -0.02 -0.44 28.99 -2.72 -0.08 -0.52 16 22 C -0.06 -1.58 9.78 22.49 0.22 -1.36 16 23 C -0.05 -1.51 6.35 22.68 0.14 -1.36 16 24 Cl -0.02 -0.79 26.86 -2.72 -0.07 -0.86 16 25 C 0.10 4.76 5.01 86.31 0.43 5.19 16 26 H 0.26 12.77 8.31 -92.71 -0.77 12.00 16 27 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 28 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 29 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 30 H 0.10 2.54 8.14 -2.39 -0.02 2.52 16 31 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 32 H 0.09 2.93 7.02 -2.39 -0.02 2.92 16 33 H 0.19 5.06 8.06 -2.91 -0.02 5.04 16 34 H 0.19 3.67 8.06 -2.91 -0.02 3.65 16 35 H 0.14 6.43 2.75 -2.39 -0.01 6.43 16 36 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 Total: -1.00 -58.54 327.40 3.66 -54.89 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: 1.12 Total: 10.91 kcal Atomic # 6 Polarization: 1.89 SS G_CDS: 4.28 Total: 6.17 kcal Atomic # 7 Polarization: -86.12 SS G_CDS: -3.56 Total: -89.68 kcal Atomic # 8 Polarization: -23.71 SS G_CDS: -0.06 Total: -23.76 kcal Atomic # 14 Polarization: 40.83 SS G_CDS: 2.03 Total: 42.85 kcal Atomic # 17 Polarization: -1.23 SS G_CDS: -0.15 Total: -1.38 kcal Total: -58.54 3.66 -54.89 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347181024.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.239 kcal (2) G-P(sol) polarization free energy of solvation -58.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds