Wall clock time and date at job start Tue Mar 31 2020 15:15:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53004 * 109.47228 * 2 1 4 4 C 1.50698 * 109.47113 * 240.00058 * 2 1 3 5 5 H 1.08008 * 119.99798 * 237.00876 * 4 2 1 6 6 C 1.37878 * 120.00214 * 57.00469 * 4 2 1 7 7 N 1.31512 * 119.99674 * 5.54382 * 6 4 2 8 8 Si 1.86803 * 119.99868 * 185.54100 * 6 4 2 9 9 H 1.48503 * 109.46992 * 85.00369 * 8 6 4 10 10 H 1.48497 * 109.47089 * 204.99930 * 8 6 4 11 11 H 1.48495 * 109.47371 * 325.00338 * 8 6 4 12 12 C 1.53000 * 109.47327 * 119.99683 * 2 1 3 13 13 N 1.46494 * 109.47236 * 300.00298 * 12 2 1 14 14 C 1.34781 * 120.00186 * 179.97438 * 13 12 2 15 15 O 1.21567 * 119.99698 * 0.02562 * 14 13 12 16 16 N 1.34777 * 119.99771 * 180.27084 * 14 13 12 17 17 C 1.38451 * 119.99489 * 179.72620 * 16 14 13 18 18 N 1.30027 * 124.71640 * 0.03231 * 17 16 14 19 19 C 1.31100 * 117.27981 * 179.97438 * 18 17 16 20 20 Cl 1.73603 * 123.02784 * 180.02562 * 19 18 17 21 21 C 1.36842 * 113.94452 * 359.97438 * 19 18 17 22 22 C 1.43198 * 126.12261 * 180.02562 * 21 19 18 23 23 N 9.72293 * 121.75768 * 146.48209 * 12 1 2 24 24 S 1.70908 * 124.71081 * 179.72413 * 17 16 14 25 25 H 1.09007 * 109.47403 * 293.93494 * 1 2 3 26 26 H 1.09009 * 109.47390 * 53.93371 * 1 2 3 27 27 H 1.08998 * 109.47196 * 173.93456 * 1 2 3 28 28 H 1.08993 * 109.47180 * 180.02562 * 3 2 1 29 29 H 1.09003 * 109.46630 * 299.99884 * 3 2 1 30 30 H 1.09000 * 109.47278 * 59.99825 * 3 2 1 31 31 H 0.97006 * 119.99660 * 179.97438 * 7 6 4 32 32 H 1.08993 * 109.47203 * 179.97438 * 12 2 1 33 33 H 1.09006 * 109.46878 * 60.00067 * 12 2 1 34 34 H 0.97007 * 120.00186 * 359.97438 * 13 12 2 35 35 H 0.96994 * 120.00241 * 359.73168 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6925 -1.5595 -1.1321 6 6 1.6490 -0.2765 -2.4818 7 7 0.9350 0.8208 -2.6071 8 14 2.1441 -1.2471 -3.9991 9 1 1.1619 -2.3362 -4.2323 10 1 2.1707 -0.3440 -5.1776 11 1 3.4931 -1.8328 -3.7937 12 6 2.0400 -0.7212 1.2493 13 7 1.5517 -0.0306 2.4454 14 6 1.8769 -0.4913 3.6695 15 8 2.5758 -1.4797 3.7811 16 7 1.4230 0.1409 4.7699 17 6 1.7525 -0.3357 6.0274 18 7 2.4915 -1.3815 6.2527 19 6 2.7119 -1.7032 7.5044 20 17 3.6761 -3.0680 7.9750 21 6 2.1143 -0.8655 8.4065 22 6 2.1832 -0.9734 9.8328 23 7 2.2390 -1.0582 10.9643 24 16 1.2504 0.3733 7.4992 25 1 -0.3634 0.4169 0.9393 26 1 -0.3634 0.6050 -0.8308 27 1 -0.3633 -1.0219 -0.1086 28 1 3.1299 1.4425 -0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6766 1.9564 0.8900 31 1 0.6657 1.1263 -3.4875 32 1 3.1299 -0.7216 1.2490 33 1 1.6766 -1.7489 1.2493 34 1 0.9942 0.7583 2.3564 35 1 0.8656 0.9297 4.6809 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364137820.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:15:19 Heat of formation + Delta-G solvation = 54.114256 kcal Electronic energy + Delta-G solvation = -22185.294521 eV Core-core repulsion = 18565.327382 eV Total energy + Delta-G solvation = -3619.967139 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 328.050 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.96237 -39.53974 -37.22975 -36.86529 -36.58056 -35.00156 -33.47796 -31.10314 -30.30427 -26.63063 -25.83741 -25.52649 -24.70534 -22.92789 -21.00358 -20.02986 -19.09152 -18.76236 -17.54992 -16.82200 -16.28856 -15.93948 -15.49884 -15.09242 -14.79091 -14.70837 -13.87832 -13.79006 -13.64345 -13.39393 -13.12992 -12.98106 -12.37342 -12.33619 -12.30370 -11.55194 -11.48490 -11.29438 -10.96779 -10.81393 -10.75503 -10.64315 -10.47466 -10.26902 -9.90432 -9.75459 -9.73696 -9.44801 -8.89841 -8.79035 -8.51209 -8.39797 -6.10256 -4.19097 -0.30740 0.09264 0.53766 1.46619 1.93406 2.31006 2.56404 2.87301 3.25107 3.28099 3.31952 3.35550 3.49206 3.95142 4.33269 4.41862 4.74194 5.17578 5.69103 5.92505 6.20912 6.27321 6.43393 6.62121 6.69085 6.80343 6.82792 6.91085 7.01230 7.13883 7.25311 7.45415 7.62564 7.89815 7.92528 8.05989 8.29073 8.55393 8.81157 9.46924 10.91859 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.029163 B = 0.002419 C = 0.002269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.887799 B =11570.311468 C =12336.517756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.057 3.943 3 C -0.131 4.131 4 C -0.508 4.508 5 H 0.059 0.941 6 C 0.068 3.932 7 N -0.885 5.885 8 Si 0.893 3.107 9 H -0.280 1.280 10 H -0.287 1.287 11 H -0.274 1.274 12 C 0.148 3.852 13 N -0.719 5.719 14 C 0.686 3.314 15 O -0.523 6.523 16 N -0.636 5.636 17 C 0.335 3.665 18 N -0.472 5.472 19 C 0.232 3.768 20 Cl 0.021 6.979 21 C -0.228 4.228 22 C 0.295 3.705 23 N -0.395 5.395 24 S 0.241 5.759 25 H 0.005 0.995 26 H 0.082 0.918 27 H 0.030 0.970 28 H 0.028 0.972 29 H 0.086 0.914 30 H 0.004 0.996 31 H 0.260 0.740 32 H 0.058 0.942 33 H 0.059 0.941 34 H 0.397 0.603 35 H 0.423 0.577 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.134 2.944 18.031 18.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.056 3.944 3 C -0.189 4.189 4 C -0.547 4.547 5 H 0.077 0.923 6 C -0.134 4.134 7 N -0.523 5.523 8 Si 0.721 3.279 9 H -0.206 1.206 10 H -0.213 1.213 11 H -0.199 1.199 12 C 0.026 3.974 13 N -0.374 5.374 14 C 0.383 3.617 15 O -0.393 6.393 16 N -0.289 5.289 17 C -0.035 4.035 18 N -0.194 5.194 19 C 0.061 3.939 20 Cl 0.050 6.950 21 C -0.357 4.357 22 C -0.022 4.022 23 N -0.073 5.073 24 S 0.493 5.507 25 H 0.024 0.976 26 H 0.101 0.899 27 H 0.050 0.950 28 H 0.047 0.953 29 H 0.105 0.895 30 H 0.023 0.977 31 H 0.071 0.929 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.232 0.768 35 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges -1.830 2.524 19.284 19.535 hybrid contribution 0.279 -0.576 -1.272 1.424 sum -1.551 1.948 18.012 18.184 Atomic orbital electron populations 1.21820 0.97647 1.00319 0.98935 1.18382 0.92836 0.92813 0.90395 1.21863 0.98744 0.98239 1.00018 1.20934 1.29528 1.14459 0.89770 0.92302 1.24867 0.94910 0.94755 0.98847 1.69814 1.37748 1.21351 1.23405 0.86583 0.79106 0.79907 0.82272 1.20586 1.21331 1.19915 1.21763 0.98316 0.95668 0.81644 1.45604 1.54934 1.32954 1.03921 1.16155 0.81634 0.83653 0.80270 1.91078 1.39066 1.24929 1.84266 1.42530 1.53158 1.31927 1.01275 1.23206 0.95409 0.93125 0.91713 1.65863 1.19116 1.15889 1.18502 1.20772 0.94652 0.91889 0.86591 1.98450 1.67638 1.39202 1.89707 1.20832 1.17635 1.06611 0.90575 1.23578 0.94037 0.94491 0.90049 1.81307 1.08429 1.07032 1.10573 1.84004 1.48039 1.25303 0.93404 0.97557 0.89931 0.95036 0.95306 0.89509 0.97659 0.92941 0.92324 0.92292 0.76775 0.73899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.65 8.03 37.15 0.30 -2.36 16 2 C 0.06 1.20 0.50 -155.66 -0.08 1.12 16 3 C -0.13 -2.69 8.11 37.16 0.30 -2.39 16 4 C -0.51 -12.58 8.01 -34.44 -0.28 -12.86 16 5 H 0.06 1.48 7.75 -52.48 -0.41 1.07 16 6 C 0.07 1.71 5.13 -17.82 -0.09 1.62 16 7 N -0.88 -22.49 9.45 55.43 0.52 -21.96 16 8 Si 0.89 20.01 29.54 -169.99 -5.02 14.99 16 9 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 10 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 11 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 12 C 0.15 2.84 4.50 -4.05 -0.02 2.82 16 13 N -0.72 -10.77 4.91 -65.23 -0.32 -11.09 16 14 C 0.69 10.31 8.52 -86.91 -0.74 9.57 16 15 O -0.52 -10.23 14.94 5.31 0.08 -10.15 16 16 N -0.64 -6.47 5.39 -17.55 -0.09 -6.56 16 17 C 0.33 3.57 7.98 -87.56 -0.70 2.88 16 18 N -0.47 -6.50 8.56 -11.71 -0.10 -6.60 16 19 C 0.23 2.77 7.41 -18.37 -0.14 2.63 16 20 Cl 0.02 0.25 28.82 -51.86 -1.49 -1.25 16 21 C -0.23 -2.23 6.39 -38.16 -0.24 -2.47 16 22 C 0.29 3.11 15.43 -22.47 -0.35 2.76 16 23 N -0.40 -4.78 18.54 41.84 0.78 -4.00 16 24 S 0.24 1.67 23.19 -107.50 -2.49 -0.82 16 25 H 0.01 0.09 6.71 -51.93 -0.35 -0.25 16 26 H 0.08 1.89 6.25 -51.92 -0.32 1.57 16 27 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 28 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.09 2.01 6.10 -51.93 -0.32 1.70 16 30 H 0.00 0.08 6.86 -51.93 -0.36 -0.28 16 31 H 0.26 6.44 8.31 -40.82 -0.34 6.10 16 32 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 33 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 34 H 0.40 4.98 6.17 -40.82 -0.25 4.73 16 35 H 0.42 2.40 8.83 -40.82 -0.36 2.04 16 LS Contribution 334.24 15.07 5.04 5.04 Total: -1.00 -29.84 334.24 -8.33 -38.17 By element: Atomic # 1 Polarization: 4.12 SS G_CDS: -3.19 Total: 0.93 kcal Atomic # 6 Polarization: 5.35 SS G_CDS: -2.03 Total: 3.32 kcal Atomic # 7 Polarization: -51.01 SS G_CDS: 0.78 Total: -50.22 kcal Atomic # 8 Polarization: -10.23 SS G_CDS: 0.08 Total: -10.15 kcal Atomic # 14 Polarization: 20.01 SS G_CDS: -5.02 Total: 14.99 kcal Atomic # 16 Polarization: 1.67 SS G_CDS: -2.49 Total: -0.82 kcal Atomic # 17 Polarization: 0.25 SS G_CDS: -1.49 Total: -1.25 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -29.84 -8.33 -38.17 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364137820.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.281 kcal (2) G-P(sol) polarization free energy of solvation -29.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.167 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds