Wall clock time and date at job start Tue Mar 31 2020 15:15:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53004 * 109.47228 * 2 1 4 4 C 1.50698 * 109.47113 * 240.00058 * 2 1 3 5 5 H 1.08008 * 119.99798 * 237.00876 * 4 2 1 6 6 C 1.37878 * 120.00214 * 57.00469 * 4 2 1 7 7 N 1.31512 * 119.99674 * 5.54382 * 6 4 2 8 8 Si 1.86803 * 119.99868 * 185.54100 * 6 4 2 9 9 H 1.48503 * 109.46992 * 85.00369 * 8 6 4 10 10 H 1.48497 * 109.47089 * 204.99930 * 8 6 4 11 11 H 1.48495 * 109.47371 * 325.00338 * 8 6 4 12 12 C 1.53000 * 109.47327 * 119.99683 * 2 1 3 13 13 N 1.46494 * 109.47236 * 300.00298 * 12 2 1 14 14 C 1.34781 * 120.00186 * 179.97438 * 13 12 2 15 15 O 1.21567 * 119.99698 * 0.02562 * 14 13 12 16 16 N 1.34777 * 119.99771 * 180.27084 * 14 13 12 17 17 C 1.38451 * 119.99489 * 179.72620 * 16 14 13 18 18 N 1.30027 * 124.71640 * 0.03231 * 17 16 14 19 19 C 1.31100 * 117.27981 * 179.97438 * 18 17 16 20 20 Cl 1.73603 * 123.02784 * 180.02562 * 19 18 17 21 21 C 1.36842 * 113.94452 * 359.97438 * 19 18 17 22 22 C 1.43198 * 126.12261 * 180.02562 * 21 19 18 23 23 N 9.72293 * 121.75768 * 146.48209 * 12 1 2 24 24 S 1.70908 * 124.71081 * 179.72413 * 17 16 14 25 25 H 1.09007 * 109.47403 * 293.93494 * 1 2 3 26 26 H 1.09009 * 109.47390 * 53.93371 * 1 2 3 27 27 H 1.08998 * 109.47196 * 173.93456 * 1 2 3 28 28 H 1.08993 * 109.47180 * 180.02562 * 3 2 1 29 29 H 1.09003 * 109.46630 * 299.99884 * 3 2 1 30 30 H 1.09000 * 109.47278 * 59.99825 * 3 2 1 31 31 H 0.97006 * 119.99660 * 179.97438 * 7 6 4 32 32 H 1.08993 * 109.47203 * 179.97438 * 12 2 1 33 33 H 1.09006 * 109.46878 * 60.00067 * 12 2 1 34 34 H 0.97007 * 120.00186 * 359.97438 * 13 12 2 35 35 H 0.96994 * 120.00241 * 359.73168 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6925 -1.5595 -1.1321 6 6 1.6490 -0.2765 -2.4818 7 7 0.9350 0.8208 -2.6071 8 14 2.1441 -1.2471 -3.9991 9 1 1.1619 -2.3362 -4.2323 10 1 2.1707 -0.3440 -5.1776 11 1 3.4931 -1.8328 -3.7937 12 6 2.0400 -0.7212 1.2493 13 7 1.5517 -0.0306 2.4454 14 6 1.8769 -0.4913 3.6695 15 8 2.5758 -1.4797 3.7811 16 7 1.4230 0.1409 4.7699 17 6 1.7525 -0.3357 6.0274 18 7 2.4915 -1.3815 6.2527 19 6 2.7119 -1.7032 7.5044 20 17 3.6761 -3.0680 7.9750 21 6 2.1143 -0.8655 8.4065 22 6 2.1832 -0.9734 9.8328 23 7 2.2390 -1.0582 10.9643 24 16 1.2504 0.3733 7.4992 25 1 -0.3634 0.4169 0.9393 26 1 -0.3634 0.6050 -0.8308 27 1 -0.3633 -1.0219 -0.1086 28 1 3.1299 1.4425 -0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6766 1.9564 0.8900 31 1 0.6657 1.1263 -3.4875 32 1 3.1299 -0.7216 1.2490 33 1 1.6766 -1.7489 1.2493 34 1 0.9942 0.7583 2.3564 35 1 0.8656 0.9297 4.6809 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364137820.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:15:19 Heat of formation + Delta-G solvation = 35.374060 kcal Electronic energy + Delta-G solvation = -22186.107157 eV Core-core repulsion = 18565.327382 eV Total energy + Delta-G solvation = -3620.779775 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 328.050 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.94140 -40.59113 -38.40526 -37.83334 -37.73179 -36.05832 -35.01760 -32.73900 -31.25743 -27.81750 -27.49971 -27.22620 -26.03500 -23.93007 -22.02021 -20.95587 -20.49407 -20.07619 -18.41475 -17.87165 -17.64711 -17.24752 -16.60386 -16.36851 -16.18150 -15.95689 -15.25604 -14.88321 -14.71352 -14.49084 -14.42773 -14.25385 -13.95530 -13.38649 -13.16235 -13.12982 -13.03245 -12.66100 -12.57938 -12.31394 -12.19835 -12.12254 -11.76212 -11.75175 -11.42698 -11.18249 -10.73768 -10.65926 -10.63816 -10.35768 -10.01460 -9.38290 -8.00487 -6.13589 -1.11918 -0.64069 -0.23186 0.67225 1.05901 1.38729 1.44692 1.48676 1.55289 1.68669 2.01483 2.15690 2.47430 2.62093 3.00419 3.24356 3.51231 3.86158 4.43807 4.57510 4.76489 4.88215 5.02383 5.11032 5.12307 5.25837 5.36032 5.47238 5.60576 5.72646 5.73873 6.15988 6.21058 6.26399 6.29785 6.47362 6.90200 6.92119 7.41962 7.53647 8.98664 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.029163 B = 0.002419 C = 0.002269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.887799 B =11570.311468 C =12336.517756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.052 3.948 3 C -0.121 4.121 4 C -0.528 4.528 5 H 0.044 0.956 6 C 0.031 3.969 7 N -0.896 5.896 8 Si 0.939 3.061 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.278 1.278 12 C 0.167 3.833 13 N -0.710 5.710 14 C 0.692 3.308 15 O -0.572 6.572 16 N -0.619 5.619 17 C 0.302 3.698 18 N -0.517 5.517 19 C 0.216 3.784 20 Cl 0.009 6.991 21 C -0.234 4.234 22 C 0.311 3.689 23 N -0.421 5.421 24 S 0.380 5.620 25 H 0.044 0.956 26 H 0.058 0.942 27 H 0.017 0.983 28 H 0.017 0.983 29 H 0.060 0.940 30 H 0.043 0.957 31 H 0.259 0.741 32 H 0.040 0.960 33 H 0.041 0.959 34 H 0.412 0.588 35 H 0.446 0.554 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.440 4.701 19.605 20.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.051 3.949 3 C -0.179 4.179 4 C -0.567 4.567 5 H 0.062 0.938 6 C -0.169 4.169 7 N -0.535 5.535 8 Si 0.766 3.234 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.203 1.203 12 C 0.043 3.957 13 N -0.367 5.367 14 C 0.389 3.611 15 O -0.446 6.446 16 N -0.274 5.274 17 C -0.065 4.065 18 N -0.240 5.240 19 C 0.044 3.956 20 Cl 0.037 6.963 21 C -0.363 4.363 22 C -0.005 4.005 23 N -0.099 5.099 24 S 0.632 5.368 25 H 0.063 0.937 26 H 0.077 0.923 27 H 0.036 0.964 28 H 0.036 0.964 29 H 0.079 0.921 30 H 0.062 0.938 31 H 0.069 0.931 32 H 0.059 0.941 33 H 0.059 0.941 34 H 0.250 0.750 35 H 0.289 0.711 Dipole moment (debyes) X Y Z Total from point charges -3.188 4.353 20.894 21.579 hybrid contribution 0.655 -1.071 -1.637 2.063 sum -2.534 3.282 19.257 19.699 Atomic orbital electron populations 1.21661 0.96831 0.99260 1.00001 1.18367 0.93400 0.93113 0.90000 1.21696 0.97969 0.97665 1.00588 1.21257 1.29394 1.14382 0.91620 0.93792 1.25380 0.95295 0.95532 1.00706 1.69913 1.38188 1.21836 1.23562 0.85870 0.78489 0.78896 0.80106 1.20573 1.21065 1.20273 1.21208 0.97067 0.94873 0.82530 1.45189 1.55176 1.33183 1.03111 1.16154 0.80894 0.83070 0.80937 1.91059 1.41140 1.27190 1.85192 1.42023 1.53077 1.32223 1.00085 1.23449 0.96255 0.93765 0.93047 1.65767 1.20540 1.17789 1.19867 1.20689 0.95809 0.92474 0.86634 1.98437 1.68132 1.40020 1.89687 1.21163 1.17423 1.07464 0.90212 1.23569 0.93276 0.93695 0.89998 1.81331 1.09245 1.07902 1.11432 1.83597 1.43972 1.20888 0.88310 0.93670 0.92288 0.96389 0.96380 0.92087 0.93827 0.93110 0.94138 0.94063 0.75021 0.71129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.78 8.03 71.98 0.58 -4.20 16 2 C 0.05 2.19 0.50 -52.93 -0.03 2.16 16 3 C -0.12 -4.85 8.11 71.98 0.58 -4.27 16 4 C -0.53 -26.51 8.01 25.60 0.20 -26.30 16 5 H 0.04 2.28 7.75 -2.91 -0.02 2.25 16 6 C 0.03 1.57 5.13 84.66 0.43 2.00 16 7 N -0.90 -45.69 9.45 21.45 0.20 -45.49 16 8 Si 0.94 41.38 29.54 68.60 2.03 43.40 16 9 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 10 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 11 H -0.28 -12.27 7.11 99.48 0.71 -11.57 16 12 C 0.17 6.37 4.50 86.38 0.39 6.76 16 13 N -0.71 -19.97 4.91 -478.57 -2.35 -22.32 16 14 C 0.69 19.81 8.52 179.05 1.53 21.34 16 15 O -0.57 -22.42 14.94 -3.93 -0.06 -22.48 16 16 N -0.62 -10.84 5.39 -327.71 -1.77 -12.60 16 17 C 0.30 5.67 7.98 179.28 1.43 7.10 16 18 N -0.52 -13.73 8.56 -190.96 -1.63 -15.36 16 19 C 0.22 4.93 7.41 84.47 0.63 5.55 16 20 Cl 0.01 0.20 28.82 -2.72 -0.08 0.13 16 21 C -0.23 -4.02 6.39 23.19 0.15 -3.87 16 22 C 0.31 5.94 15.43 88.33 1.36 7.31 16 23 N -0.42 -9.53 18.54 19.00 0.35 -9.18 16 24 S 0.38 3.67 23.19 -56.49 -1.31 2.36 16 25 H 0.04 1.40 6.71 -2.38 -0.02 1.38 16 26 H 0.06 2.66 6.25 -2.38 -0.01 2.64 16 27 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 28 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.06 2.79 6.10 -2.39 -0.01 2.77 16 30 H 0.04 1.36 6.86 -2.39 -0.02 1.34 16 31 H 0.26 12.83 8.31 -92.70 -0.77 12.06 16 32 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 33 H 0.04 1.71 8.14 -2.38 -0.02 1.69 16 34 H 0.41 8.93 6.17 -92.70 -0.57 8.36 16 35 H 0.45 3.19 8.83 -92.71 -0.82 2.37 16 Total: -1.00 -67.20 334.24 2.44 -64.76 By element: Atomic # 1 Polarization: 3.40 SS G_CDS: -0.20 Total: 3.19 kcal Atomic # 6 Polarization: 6.33 SS G_CDS: 7.26 Total: 13.58 kcal Atomic # 7 Polarization: -99.76 SS G_CDS: -5.19 Total: -104.95 kcal Atomic # 8 Polarization: -22.42 SS G_CDS: -0.06 Total: -22.48 kcal Atomic # 14 Polarization: 41.38 SS G_CDS: 2.03 Total: 43.40 kcal Atomic # 16 Polarization: 3.67 SS G_CDS: -1.31 Total: 2.36 kcal Atomic # 17 Polarization: 0.20 SS G_CDS: -0.08 Total: 0.13 kcal Total: -67.20 2.44 -64.76 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364137820.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.134 kcal (2) G-P(sol) polarization free energy of solvation -67.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.760 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds