Wall clock time and date at job start Tue Mar 31 2020 15:53:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.43198 * 179.97438 * 2 1 4 4 S 1.75856 * 125.38616 * 333.80981 * 3 2 1 5 5 C 1.75733 * 91.31033 * 180.21569 * 4 3 2 6 6 C 1.33315 * 110.44099 * 359.83330 * 5 4 3 7 7 C 1.38003 * 125.38610 * 153.73014 * 3 2 1 8 8 C 1.47366 * 123.09197 * 359.97438 * 7 3 2 9 9 O 1.21611 * 120.00189 * 359.73156 * 8 7 3 10 10 N 1.34776 * 120.00006 * 179.72824 * 8 7 3 11 11 C 1.46506 * 120.00039 * 179.97438 * 10 8 7 12 12 C 1.50700 * 109.47222 * 179.72863 * 11 10 8 13 13 C 1.38303 * 119.92687 * 269.73074 * 12 11 10 14 14 C 1.38102 * 120.06272 * 179.72720 * 13 12 11 15 15 C 1.38877 * 119.93092 * 0.56459 * 14 13 12 16 16 O 1.35754 * 120.06908 * 179.68613 * 15 14 13 17 17 C 1.34835 * 117.00174 * 174.49085 * 16 15 14 18 18 H 1.07999 * 119.99479 * 5.05241 * 17 16 15 19 19 C 1.38646 * 119.99973 * 185.05815 * 17 16 15 20 20 N 1.31556 * 120.00208 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 119.99892 * 180.02562 * 19 17 16 22 22 H 1.48495 * 109.47095 * 59.99750 * 21 19 17 23 23 H 1.48497 * 109.47092 * 179.97438 * 21 19 17 24 24 H 1.48502 * 109.46700 * 299.99402 * 21 19 17 25 25 C 1.38877 * 119.86520 * 359.70939 * 15 14 13 26 26 C 1.38104 * 119.92688 * 359.97438 * 25 15 14 27 27 H 1.08000 * 124.77727 * 179.87653 * 5 4 3 28 28 H 1.08002 * 122.39454 * 180.02562 * 6 5 4 29 29 H 0.96997 * 119.99784 * 359.73429 * 10 8 7 30 30 H 1.08993 * 109.47241 * 299.73152 * 11 10 8 31 31 H 1.08999 * 109.46538 * 59.72920 * 11 10 8 32 32 H 1.07992 * 119.96935 * 359.97438 * 13 12 11 33 33 H 1.08000 * 120.03542 * 180.27868 * 14 13 12 34 34 H 0.96997 * 120.00219 * 180.02562 * 20 19 17 35 35 H 1.07999 * 120.03695 * 179.97438 * 25 15 14 36 36 H 1.07997 * 119.96206 * 180.02562 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 16 3.5869 -1.2854 0.6328 5 6 5.0421 -0.3983 0.2041 6 6 4.7273 0.7633 -0.3693 7 6 3.3667 1.0099 -0.4980 8 6 2.8255 2.2387 -1.1052 9 8 1.6227 2.3966 -1.1895 10 7 3.6637 3.1877 -1.5672 11 6 3.1257 4.4091 -2.1714 12 6 4.2627 5.3021 -2.5966 13 6 4.7679 6.2421 -1.7169 14 6 5.8135 7.0581 -2.1017 15 6 6.3499 6.9420 -3.3774 16 8 7.3735 7.7471 -3.7607 17 6 7.9225 7.5063 -4.9685 18 1 7.4933 6.7567 -5.6169 19 6 9.0379 8.2208 -5.3779 20 7 9.5604 9.1340 -4.5882 21 14 9.7980 7.8876 -7.0514 22 1 8.7934 8.1515 -8.1127 23 1 10.9707 8.7770 -7.2484 24 1 10.2338 6.4698 -7.1237 25 6 5.8366 6.0010 -4.2604 26 6 4.7952 5.1835 -3.8674 27 1 6.0495 -0.7457 0.3798 28 1 5.4769 1.4624 -0.7097 29 1 4.6231 3.0635 -1.4965 30 1 2.5230 4.1490 -3.0415 31 1 2.5057 4.9320 -1.4432 32 1 4.3470 6.3354 -0.7268 33 1 6.2107 7.7889 -1.4128 34 1 10.3405 9.6342 -4.8748 35 1 6.2513 5.9087 -5.2533 36 1 4.3959 4.4512 -4.5535 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001464759945.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:53:20 Heat of formation + Delta-G solvation = 29.489964 kcal Electronic energy + Delta-G solvation = -22984.015810 eV Core-core repulsion = 19333.120980 eV Total energy + Delta-G solvation = -3650.894830 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.067 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.33362 -39.17545 -37.70734 -36.84869 -36.52644 -34.55614 -32.42100 -30.62297 -30.35622 -30.12131 -26.87832 -25.58132 -24.32960 -22.10996 -22.00699 -21.03505 -20.65875 -19.41791 -18.12186 -17.36445 -16.90683 -16.38218 -15.62910 -15.55576 -14.98146 -14.77444 -14.60833 -14.22975 -14.12177 -13.92209 -13.74550 -13.72299 -13.41980 -13.17307 -12.93024 -12.83376 -12.66323 -12.32326 -12.14115 -11.72974 -11.62088 -11.44710 -11.01552 -10.85444 -10.75725 -10.54011 -10.17015 -9.48165 -9.39481 -9.26151 -9.00233 -8.95044 -8.33987 -7.38580 -6.56968 -4.16100 -0.26500 0.60036 1.18695 1.51321 1.99490 2.07945 2.62128 2.79186 3.05453 3.06410 3.10171 3.22682 3.25010 3.67751 3.86908 4.31066 4.46941 4.64262 4.72444 4.97620 5.10095 5.16674 5.30939 5.35968 5.45048 5.57502 5.60875 5.74708 5.85633 6.07350 6.29531 6.34541 6.54655 6.75088 6.90284 7.08512 7.21575 7.22915 7.30371 7.42189 7.66287 7.87402 8.04549 8.88138 9.55669 10.60298 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.020518 B = 0.002197 C = 0.002092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1364.354235 B =12740.969811 C =13384.274571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.380 5.380 2 C 0.279 3.721 3 C -0.090 4.090 4 S 0.220 5.780 5 C -0.196 4.196 6 C -0.118 4.118 7 C -0.085 4.085 8 C 0.562 3.438 9 O -0.532 6.532 10 N -0.708 5.708 11 C 0.179 3.821 12 C -0.218 4.218 13 C -0.053 4.053 14 C -0.195 4.195 15 C 0.161 3.839 16 O -0.172 6.172 17 C -0.394 4.394 18 H 0.093 0.907 19 C 0.041 3.959 20 N -0.859 5.859 21 Si 0.942 3.058 22 H -0.269 1.269 23 H -0.277 1.277 24 H -0.269 1.269 25 C -0.237 4.237 26 C -0.049 4.049 27 H 0.182 0.818 28 H 0.159 0.841 29 H 0.403 0.597 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.113 0.887 33 H 0.118 0.882 34 H 0.272 0.728 35 H 0.128 0.872 36 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.039 -18.778 8.763 21.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.058 5.058 2 C -0.038 4.038 3 C -0.213 4.213 4 S 0.487 5.513 5 C -0.334 4.334 6 C -0.146 4.146 7 C -0.107 4.107 8 C 0.346 3.654 9 O -0.409 6.409 10 N -0.360 5.360 11 C 0.057 3.943 12 C -0.219 4.219 13 C -0.072 4.072 14 C -0.215 4.215 15 C 0.106 3.894 16 O -0.074 6.074 17 C -0.470 4.470 18 H 0.111 0.889 19 C -0.164 4.164 20 N -0.493 5.493 21 Si 0.766 3.234 22 H -0.194 1.194 23 H -0.202 1.202 24 H -0.194 1.194 25 C -0.256 4.256 26 C -0.068 4.068 27 H 0.200 0.800 28 H 0.176 0.824 29 H 0.239 0.761 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.131 0.869 33 H 0.136 0.864 34 H 0.082 0.918 35 H 0.146 0.854 36 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -7.569 -19.701 9.490 23.140 hybrid contribution 1.743 1.222 -1.572 2.646 sum -5.826 -18.479 7.918 20.931 Atomic orbital electron populations 1.81216 1.11025 1.06611 1.06938 1.23902 0.90659 0.94468 0.94738 1.20420 0.89849 1.00886 1.10096 1.84356 0.94383 1.16858 1.55746 1.25897 1.02893 0.98808 1.05755 1.20073 0.94668 0.98413 1.01489 1.19567 0.93015 0.95688 1.02413 1.17655 0.86446 0.82543 0.78725 1.90847 1.14495 1.78900 1.56683 1.46215 1.10146 1.19160 1.60458 1.20047 0.93979 0.82759 0.97475 1.19170 1.03264 1.03240 0.96230 1.20537 0.94639 0.94113 0.97917 1.20218 1.01245 1.04794 0.95205 1.19449 0.88509 0.88937 0.92510 1.83981 1.40379 1.47497 1.35576 1.21311 1.11340 1.23046 0.91333 0.88937 1.25319 0.95683 0.95549 0.99867 1.70021 1.21665 1.21244 1.36327 0.85763 0.78750 0.78721 0.80135 1.19407 1.20194 1.19403 1.21158 1.01713 1.01273 1.01499 1.20646 0.94542 0.96965 0.94673 0.80034 0.82356 0.76136 0.91239 0.91194 0.86908 0.86350 0.91776 0.85399 0.87345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.38 -5.69 18.54 41.84 0.78 -4.91 16 2 C 0.28 3.56 13.95 -22.47 -0.31 3.25 16 3 C -0.09 -0.87 6.36 -37.74 -0.24 -1.11 16 4 S 0.22 1.22 23.27 -107.50 -2.50 -1.28 16 5 C -0.20 -0.88 11.16 29.01 0.32 -0.56 16 6 C -0.12 -0.74 9.61 -41.06 -0.39 -1.14 16 7 C -0.08 -0.82 5.86 -106.03 -0.62 -1.44 16 8 C 0.56 7.09 7.79 -12.55 -0.10 7.00 16 9 O -0.53 -8.80 15.19 5.27 0.08 -8.72 16 10 N -0.71 -8.02 5.52 -62.58 -0.35 -8.37 16 11 C 0.18 2.34 5.80 -5.19 -0.03 2.31 16 12 C -0.22 -3.25 5.25 -104.58 -0.55 -3.80 16 13 C -0.05 -0.84 9.69 -39.61 -0.38 -1.22 16 14 C -0.20 -3.75 9.99 -39.39 -0.39 -4.14 16 15 C 0.16 3.59 6.65 -39.11 -0.26 3.33 16 16 O -0.17 -4.63 9.76 0.02 0.00 -4.63 16 17 C -0.39 -10.43 9.49 30.88 0.29 -10.14 16 18 H 0.09 2.24 5.20 -52.49 -0.27 1.97 16 19 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 20 N -0.86 -24.14 13.67 55.48 0.76 -23.39 16 21 Si 0.94 19.52 29.55 -169.99 -5.02 14.50 16 22 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 23 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 24 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 25 C -0.24 -4.68 9.17 -39.39 -0.36 -5.04 16 26 C -0.05 -0.80 9.69 -39.61 -0.38 -1.19 16 27 H 0.18 0.30 8.06 -52.49 -0.42 -0.12 16 28 H 0.16 0.73 6.88 -52.49 -0.36 0.37 16 29 H 0.40 3.74 6.88 -40.82 -0.28 3.46 16 30 H 0.07 0.93 8.08 -51.93 -0.42 0.51 16 31 H 0.07 0.93 8.08 -51.93 -0.42 0.51 16 32 H 0.11 1.50 8.06 -52.49 -0.42 1.08 16 33 H 0.12 2.21 8.06 -52.49 -0.42 1.79 16 34 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 35 H 0.13 2.55 5.64 -52.49 -0.30 2.26 16 36 H 0.11 1.52 8.06 -52.49 -0.42 1.10 16 LS Contribution 344.07 15.07 5.19 5.19 Total: -1.00 -32.70 344.07 -7.46 -40.15 By element: Atomic # 1 Polarization: 7.27 SS G_CDS: -2.88 Total: 4.40 kcal Atomic # 6 Polarization: -9.42 SS G_CDS: -3.51 Total: -12.93 kcal Atomic # 7 Polarization: -37.86 SS G_CDS: 1.19 Total: -36.67 kcal Atomic # 8 Polarization: -13.44 SS G_CDS: 0.08 Total: -13.36 kcal Atomic # 14 Polarization: 19.52 SS G_CDS: -5.02 Total: 14.50 kcal Atomic # 16 Polarization: 1.22 SS G_CDS: -2.50 Total: -1.28 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -32.70 -7.46 -40.15 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001464759945.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.645 kcal (2) G-P(sol) polarization free energy of solvation -32.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.155 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds