Wall clock time and date at job start Tue Mar 31 2020 15:53:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.43198 * 179.97438 * 2 1 4 4 S 1.75856 * 125.38616 * 333.80981 * 3 2 1 5 5 C 1.75733 * 91.31033 * 180.21569 * 4 3 2 6 6 C 1.33315 * 110.44099 * 359.83330 * 5 4 3 7 7 C 1.38003 * 125.38610 * 153.73014 * 3 2 1 8 8 C 1.47366 * 123.09197 * 359.97438 * 7 3 2 9 9 O 1.21611 * 120.00189 * 359.73156 * 8 7 3 10 10 N 1.34776 * 120.00006 * 179.72824 * 8 7 3 11 11 C 1.46506 * 120.00039 * 179.97438 * 10 8 7 12 12 C 1.50700 * 109.47222 * 179.72863 * 11 10 8 13 13 C 1.38303 * 119.92687 * 269.73074 * 12 11 10 14 14 C 1.38102 * 120.06272 * 179.72720 * 13 12 11 15 15 C 1.38877 * 119.93092 * 0.56459 * 14 13 12 16 16 O 1.35754 * 120.06908 * 179.68613 * 15 14 13 17 17 C 1.34835 * 117.00174 * 174.49085 * 16 15 14 18 18 H 1.07999 * 119.99479 * 5.05241 * 17 16 15 19 19 C 1.38646 * 119.99973 * 185.05815 * 17 16 15 20 20 N 1.31556 * 120.00208 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 119.99892 * 180.02562 * 19 17 16 22 22 H 1.48495 * 109.47095 * 59.99750 * 21 19 17 23 23 H 1.48497 * 109.47092 * 179.97438 * 21 19 17 24 24 H 1.48502 * 109.46700 * 299.99402 * 21 19 17 25 25 C 1.38877 * 119.86520 * 359.70939 * 15 14 13 26 26 C 1.38104 * 119.92688 * 359.97438 * 25 15 14 27 27 H 1.08000 * 124.77727 * 179.87653 * 5 4 3 28 28 H 1.08002 * 122.39454 * 180.02562 * 6 5 4 29 29 H 0.96997 * 119.99784 * 359.73429 * 10 8 7 30 30 H 1.08993 * 109.47241 * 299.73152 * 11 10 8 31 31 H 1.08999 * 109.46538 * 59.72920 * 11 10 8 32 32 H 1.07992 * 119.96935 * 359.97438 * 13 12 11 33 33 H 1.08000 * 120.03542 * 180.27868 * 14 13 12 34 34 H 0.96997 * 120.00219 * 180.02562 * 20 19 17 35 35 H 1.07999 * 120.03695 * 179.97438 * 25 15 14 36 36 H 1.07997 * 119.96206 * 180.02562 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 16 3.5869 -1.2854 0.6328 5 6 5.0421 -0.3983 0.2041 6 6 4.7273 0.7633 -0.3693 7 6 3.3667 1.0099 -0.4980 8 6 2.8255 2.2387 -1.1052 9 8 1.6227 2.3966 -1.1895 10 7 3.6637 3.1877 -1.5672 11 6 3.1257 4.4091 -2.1714 12 6 4.2627 5.3021 -2.5966 13 6 4.7679 6.2421 -1.7169 14 6 5.8135 7.0581 -2.1017 15 6 6.3499 6.9420 -3.3774 16 8 7.3735 7.7471 -3.7607 17 6 7.9225 7.5063 -4.9685 18 1 7.4933 6.7567 -5.6169 19 6 9.0379 8.2208 -5.3779 20 7 9.5604 9.1340 -4.5882 21 14 9.7980 7.8876 -7.0514 22 1 8.7934 8.1515 -8.1127 23 1 10.9707 8.7770 -7.2484 24 1 10.2338 6.4698 -7.1237 25 6 5.8366 6.0010 -4.2604 26 6 4.7952 5.1835 -3.8674 27 1 6.0495 -0.7457 0.3798 28 1 5.4769 1.4624 -0.7097 29 1 4.6231 3.0635 -1.4965 30 1 2.5230 4.1490 -3.0415 31 1 2.5057 4.9320 -1.4432 32 1 4.3470 6.3354 -0.7268 33 1 6.2107 7.7889 -1.4128 34 1 10.3405 9.6342 -4.8748 35 1 6.2513 5.9087 -5.2533 36 1 4.3959 4.4512 -4.5535 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001464759945.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:53:19 Heat of formation + Delta-G solvation = 7.952301 kcal Electronic energy + Delta-G solvation = -22984.949753 eV Core-core repulsion = 19333.120980 eV Total energy + Delta-G solvation = -3651.828773 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.067 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.29414 -40.70729 -38.73035 -38.18121 -37.43084 -35.73772 -34.26169 -31.83638 -31.55942 -31.14623 -28.07272 -27.17694 -25.45010 -23.62519 -22.75030 -22.19932 -21.62645 -20.28591 -19.83192 -18.85160 -17.88336 -17.26342 -16.68891 -16.49936 -16.31293 -16.13669 -15.88343 -15.52152 -15.32842 -15.15009 -14.87830 -14.68145 -14.50938 -14.36051 -14.21562 -14.02486 -13.69461 -13.48379 -13.22463 -13.03752 -13.00302 -12.52904 -12.36910 -12.22543 -12.13514 -12.08672 -11.22264 -11.18172 -10.77490 -10.22512 -9.91895 -9.78928 -9.61744 -8.99952 -8.46299 -6.14499 -0.92227 0.03500 0.55338 0.60176 0.74918 0.94656 1.37856 1.47134 1.53386 1.70581 1.85915 2.18685 2.23483 2.39536 2.83148 2.93049 3.19713 3.50507 3.67618 3.85964 4.04631 4.07897 4.19761 4.26602 4.45950 4.58877 4.73053 4.81896 4.84072 5.01479 5.06011 5.11224 5.16259 5.28731 5.34090 5.54619 5.71404 5.76598 6.03360 6.17664 6.32921 6.49330 6.98593 7.11679 7.77822 8.76161 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.020518 B = 0.002197 C = 0.002092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1364.354235 B =12740.969811 C =13384.274571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.439 5.439 2 C 0.294 3.706 3 C -0.134 4.134 4 S 0.283 5.717 5 C -0.170 4.170 6 C -0.129 4.129 7 C -0.088 4.088 8 C 0.561 3.439 9 O -0.577 6.577 10 N -0.698 5.698 11 C 0.184 3.816 12 C -0.183 4.183 13 C -0.042 4.042 14 C -0.204 4.204 15 C 0.123 3.877 16 O -0.229 6.229 17 C -0.413 4.413 18 H 0.104 0.896 19 C -0.021 4.021 20 N -0.919 5.919 21 Si 1.016 2.984 22 H -0.259 1.259 23 H -0.274 1.274 24 H -0.255 1.255 25 C -0.243 4.243 26 C -0.044 4.044 27 H 0.221 0.779 28 H 0.178 0.822 29 H 0.416 0.584 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.147 0.853 33 H 0.115 0.885 34 H 0.273 0.727 35 H 0.121 0.879 36 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.645 -21.937 9.206 24.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.118 5.118 2 C -0.021 4.021 3 C -0.257 4.257 4 S 0.550 5.450 5 C -0.307 4.307 6 C -0.156 4.156 7 C -0.112 4.112 8 C 0.347 3.653 9 O -0.458 6.458 10 N -0.350 5.350 11 C 0.061 3.939 12 C -0.184 4.184 13 C -0.060 4.060 14 C -0.223 4.223 15 C 0.072 3.928 16 O -0.135 6.135 17 C -0.489 4.489 18 H 0.122 0.878 19 C -0.219 4.219 20 N -0.557 5.557 21 Si 0.836 3.164 22 H -0.184 1.184 23 H -0.199 1.199 24 H -0.179 1.179 25 C -0.262 4.262 26 C -0.062 4.062 27 H 0.237 0.763 28 H 0.195 0.805 29 H 0.254 0.746 30 H 0.090 0.910 31 H 0.092 0.908 32 H 0.165 0.835 33 H 0.133 0.867 34 H 0.082 0.918 35 H 0.138 0.862 36 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -7.197 -22.915 9.959 26.001 hybrid contribution 1.397 1.939 -1.468 2.805 sum -5.800 -20.976 8.491 23.361 Atomic orbital electron populations 1.81198 1.12729 1.08610 1.09265 1.24482 0.91538 0.92898 0.93175 1.20703 0.88681 1.03460 1.12831 1.84263 0.93215 1.14299 1.53208 1.26435 1.04215 0.97427 1.02670 1.20171 0.93221 0.99750 1.02498 1.19456 0.94483 0.94350 1.02881 1.18083 0.85822 0.83338 0.78040 1.90836 1.16512 1.79937 1.58546 1.45970 1.10755 1.18325 1.59912 1.19929 0.92910 0.83108 0.97942 1.19422 1.01913 1.01818 0.95215 1.20872 0.92995 0.92702 0.99458 1.20441 1.02131 1.05468 0.94261 1.20005 0.88504 0.89992 0.94264 1.83952 1.42942 1.50265 1.36302 1.21788 1.11833 1.23468 0.91816 0.87841 1.26558 0.96032 0.95197 1.04116 1.70169 1.22969 1.23546 1.38969 0.84675 0.77783 0.79126 0.74852 1.18372 1.19890 1.17896 1.21239 1.02645 1.01389 1.00935 1.20933 0.93118 0.96489 0.95665 0.76264 0.80500 0.74638 0.91015 0.90802 0.83504 0.86702 0.91825 0.86159 0.84284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -13.56 18.54 19.00 0.35 -13.21 16 2 C 0.29 7.51 13.95 88.33 1.23 8.75 16 3 C -0.13 -2.35 6.36 23.46 0.15 -2.20 16 4 S 0.28 2.07 23.27 -56.49 -1.31 0.76 16 5 C -0.17 -0.63 11.16 66.71 0.74 0.11 16 6 C -0.13 -1.08 9.61 21.31 0.20 -0.87 16 7 C -0.09 -1.47 5.86 -20.78 -0.12 -1.59 16 8 C 0.56 13.04 7.79 86.65 0.67 13.72 16 9 O -0.58 -18.74 15.19 -4.07 -0.06 -18.80 16 10 N -0.70 -13.57 5.52 -470.16 -2.59 -16.16 16 11 C 0.18 4.19 5.80 85.63 0.50 4.68 16 12 C -0.18 -4.86 5.25 -19.84 -0.10 -4.96 16 13 C -0.04 -1.21 9.69 22.25 0.22 -0.99 16 14 C -0.20 -7.78 9.99 22.39 0.22 -7.55 16 15 C 0.12 5.64 6.65 22.58 0.15 5.79 16 16 O -0.23 -13.00 9.76 -22.84 -0.22 -13.22 16 17 C -0.41 -22.81 9.49 67.92 0.64 -22.16 16 18 H 0.10 5.18 5.20 -2.91 -0.02 5.16 16 19 C -0.02 -1.15 5.49 84.83 0.47 -0.68 16 20 N -0.92 -54.45 13.67 21.61 0.30 -54.16 16 21 Si 1.02 40.85 29.55 68.60 2.03 42.88 16 22 H -0.26 -9.85 7.11 99.48 0.71 -9.14 16 23 H -0.27 -10.71 7.11 99.48 0.71 -10.00 16 24 H -0.25 -9.50 7.11 99.48 0.71 -8.79 16 25 C -0.24 -9.49 9.17 22.39 0.21 -9.28 16 26 C -0.04 -1.30 9.69 22.25 0.22 -1.08 16 27 H 0.22 -0.79 8.06 -2.91 -0.02 -0.81 16 28 H 0.18 0.77 6.88 -2.91 -0.02 0.75 16 29 H 0.42 6.06 6.88 -92.71 -0.64 5.43 16 30 H 0.07 1.69 8.08 -2.39 -0.02 1.67 16 31 H 0.07 1.72 8.08 -2.39 -0.02 1.70 16 32 H 0.15 3.31 8.06 -2.91 -0.02 3.29 16 33 H 0.11 4.39 8.06 -2.91 -0.02 4.37 16 34 H 0.27 14.86 8.31 -92.71 -0.77 14.09 16 35 H 0.12 4.83 5.64 -2.91 -0.02 4.81 16 36 H 0.14 3.35 8.06 -2.91 -0.02 3.33 16 Total: -1.00 -78.79 344.07 4.41 -74.39 By element: Atomic # 1 Polarization: 15.33 SS G_CDS: 0.53 Total: 15.86 kcal Atomic # 6 Polarization: -23.74 SS G_CDS: 5.40 Total: -18.34 kcal Atomic # 7 Polarization: -81.58 SS G_CDS: -1.95 Total: -83.53 kcal Atomic # 8 Polarization: -31.73 SS G_CDS: -0.28 Total: -32.02 kcal Atomic # 14 Polarization: 40.85 SS G_CDS: 2.03 Total: 42.88 kcal Atomic # 16 Polarization: 2.07 SS G_CDS: -1.31 Total: 0.76 kcal Total: -78.79 4.41 -74.39 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001464759945.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.339 kcal (2) G-P(sol) polarization free energy of solvation -78.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.386 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds