Wall clock time and date at job start Tue Mar 31 2020 15:24:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09006 * 109.46976 * 2 1 4 4 C 1.50700 * 109.47495 * 239.99758 * 2 1 3 5 5 H 1.07997 * 120.00030 * 240.00103 * 4 2 1 6 6 C 1.37874 * 120.00067 * 59.99569 * 4 2 1 7 7 N 1.31516 * 119.99928 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 120.00329 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.46813 * 89.99796 * 8 6 4 10 10 H 1.48492 * 109.47193 * 210.00575 * 8 6 4 11 11 H 1.48506 * 109.46602 * 330.00466 * 8 6 4 12 12 N 1.46899 * 109.47006 * 119.99475 * 2 1 3 13 13 C 1.46896 * 110.99948 * 299.41568 * 12 2 1 14 14 C 1.39789 * 110.99931 * 175.46492 * 12 2 1 15 15 C 1.38932 * 120.00606 * 59.93760 * 14 12 2 16 16 C 1.38276 * 120.25067 * 180.02562 * 15 14 12 17 17 C 1.37952 * 120.27086 * 359.72540 * 16 15 14 18 18 N 1.48019 * 120.00266 * 180.27997 * 17 16 15 19 19 O 1.21793 * 120.00039 * 0.26769 * 18 17 16 20 20 O 1.21805 * 119.99953 * 180.27970 * 18 17 16 21 21 C 1.39696 * 119.99942 * 0.54845 * 17 16 15 22 22 C 1.47661 * 120.12319 * 179.72221 * 21 17 16 23 23 O 1.21485 * 119.99882 * 269.73044 * 22 21 17 24 24 O 1.34717 * 120.00032 * 89.45494 * 22 21 17 25 25 C 1.38793 * 120.00290 * 239.96278 * 14 12 2 26 26 Cl 1.73599 * 120.12955 * 359.95489 * 25 14 12 27 27 H 1.08992 * 109.46988 * 305.97903 * 1 2 3 28 28 H 1.09002 * 109.46573 * 65.97711 * 1 2 3 29 29 H 1.09001 * 109.46681 * 185.97248 * 1 2 3 30 30 H 0.97008 * 120.00173 * 179.97438 * 7 6 4 31 31 H 1.08998 * 109.47701 * 296.04565 * 13 12 2 32 32 H 1.08997 * 109.47535 * 56.04591 * 13 12 2 33 33 H 1.09000 * 109.47308 * 176.04564 * 13 12 2 34 34 H 1.07997 * 119.87255 * 0.02562 * 15 14 12 35 35 H 1.08006 * 119.86733 * 180.02562 * 16 15 14 36 36 H 0.96693 * 116.99749 * 0.27377 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0325 -0.7104 -1.2304 5 1 2.6534 -1.5885 -1.1312 6 6 1.6994 -0.2395 -2.4827 7 7 0.9436 0.8300 -2.6034 8 14 2.3216 -1.1205 -4.0079 9 1 1.3430 -2.1619 -4.4117 10 1 2.4868 -0.1416 -5.1122 11 1 3.6295 -1.7585 -3.7120 12 7 2.0197 -0.6924 1.1995 13 6 1.5601 -0.0181 2.4210 14 6 3.4132 -0.8011 1.1814 15 6 4.1989 0.3439 1.1374 16 6 5.5778 0.2422 1.1188 17 6 6.1843 -0.9965 1.1495 18 7 7.6609 -1.0982 1.1356 19 8 8.3406 -0.0881 1.1020 20 8 8.1962 -2.1921 1.1575 21 6 5.4047 -2.1550 1.1880 22 6 6.0509 -3.4825 1.2146 23 8 6.3004 -4.0576 0.1740 24 8 6.3689 -4.0533 2.3927 25 6 4.0121 -2.0529 1.2068 26 17 3.0338 -3.4859 1.2623 27 1 -0.3633 0.6037 0.8316 28 1 -0.3632 0.4184 -0.9387 29 1 -0.3633 -1.0221 0.1069 30 1 0.7095 1.1616 -3.4845 31 1 1.9894 0.9827 2.4671 32 1 0.4725 0.0533 2.4094 33 1 1.8774 -0.5900 3.2930 34 1 3.7309 1.3170 1.1177 35 1 6.1827 1.1364 1.0850 36 1 6.1508 -3.5575 3.1937 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592221652.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:24:14 Heat of formation + Delta-G solvation = -49.344738 kcal Electronic energy + Delta-G solvation = -26658.558208 eV Core-core repulsion = 22559.059128 eV Total energy + Delta-G solvation = -4099.499080 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.070 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.35141 -40.53103 -39.46415 -36.93314 -36.64399 -36.50587 -36.47732 -33.30273 -31.59359 -31.25359 -29.14503 -27.27085 -25.54414 -24.63950 -24.44985 -22.48107 -21.97659 -20.25909 -19.70677 -18.80825 -18.19345 -17.64389 -16.76251 -16.56442 -16.29343 -15.99235 -15.31274 -15.13545 -14.87920 -14.30325 -13.99873 -13.72729 -13.36446 -13.21030 -12.62563 -12.54532 -12.18580 -11.77423 -11.70681 -11.56833 -11.35922 -11.29794 -11.19721 -11.08525 -10.92041 -10.87426 -10.74558 -10.57210 -10.45474 -10.21383 -9.45963 -9.30687 -9.04169 -8.69986 -8.03047 -6.30020 -4.36417 -0.35724 0.52409 1.14506 1.24572 2.00375 2.04154 2.94744 2.95400 3.18605 3.25765 3.32392 3.94151 4.09063 4.26278 4.30048 4.60516 4.71160 4.94585 5.04269 5.11396 5.38212 5.51980 5.56082 5.82347 5.96324 6.00711 6.26026 6.44745 6.61304 6.69522 6.97069 7.00960 7.24369 7.49809 7.50498 7.54683 7.69088 7.90647 8.07722 8.67654 9.30914 10.75325 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.012350 B = 0.005401 C = 0.005138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2266.748948 B = 5183.245290 C = 5448.229517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.217 3.783 3 H 0.012 0.988 4 C -0.516 4.516 5 H 0.063 0.937 6 C 0.070 3.930 7 N -0.885 5.885 8 Si 0.891 3.109 9 H -0.276 1.276 10 H -0.284 1.284 11 H -0.271 1.271 12 N -0.511 5.511 13 C 0.026 3.974 14 C 0.215 3.785 15 C -0.115 4.115 16 C -0.037 4.037 17 C -0.031 4.031 18 N 0.032 4.968 19 O -0.146 6.146 20 O -0.162 6.162 21 C -0.107 4.107 22 C 0.554 3.446 23 O -0.430 6.430 24 O -0.485 6.485 25 C 0.008 3.992 26 Cl -0.008 7.008 27 H 0.013 0.987 28 H 0.094 0.906 29 H 0.039 0.961 30 H 0.265 0.735 31 H 0.027 0.973 32 H 0.084 0.916 33 H 0.059 0.941 34 H 0.158 0.842 35 H 0.162 0.838 36 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.820 0.037 12.905 13.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.115 3.885 3 H 0.029 0.971 4 C -0.554 4.554 5 H 0.081 0.919 6 C -0.134 4.134 7 N -0.523 5.523 8 Si 0.718 3.282 9 H -0.202 1.202 10 H -0.209 1.209 11 H -0.196 1.196 12 N -0.234 5.234 13 C -0.120 4.120 14 C 0.119 3.881 15 C -0.136 4.136 16 C -0.057 4.057 17 C -0.115 4.115 18 N 0.550 4.450 19 O -0.365 6.365 20 O -0.374 6.374 21 C -0.112 4.112 22 C 0.391 3.609 23 O -0.311 6.311 24 O -0.294 6.294 25 C -0.021 4.021 26 Cl 0.021 6.979 27 H 0.032 0.968 28 H 0.112 0.888 29 H 0.058 0.942 30 H 0.075 0.925 31 H 0.045 0.955 32 H 0.102 0.898 33 H 0.078 0.922 34 H 0.175 0.825 35 H 0.179 0.821 36 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges 3.015 -1.155 11.879 12.310 hybrid contribution 0.612 0.745 -0.622 1.147 sum 3.627 -0.410 11.257 11.834 Atomic orbital electron populations 1.21874 0.96437 0.99474 1.01555 1.19542 0.93251 0.91812 0.83924 0.97087 1.21082 1.31828 1.12898 0.89628 0.91878 1.24836 0.94673 0.94785 0.99076 1.69847 1.35916 1.22429 1.24098 0.86577 0.79782 0.79606 0.82256 1.20161 1.20942 1.19581 1.60166 1.02773 1.55119 1.05333 1.22469 1.02424 0.96013 0.91138 1.18878 0.92148 0.89880 0.87242 1.21936 0.92074 1.00789 0.98820 1.20915 0.95464 0.95757 0.93520 1.20719 0.79170 0.95102 1.16489 1.43479 1.03162 1.00658 0.97685 1.94522 1.62456 1.26776 1.52715 1.94598 1.74121 1.14577 1.54109 1.19872 0.92767 0.94108 1.04437 1.19593 0.75015 0.82615 0.83720 1.90926 1.48305 1.63290 1.28594 1.84620 1.77323 1.50795 1.16626 1.20701 0.88163 0.90390 1.02884 1.98419 1.69605 1.33872 1.95964 0.96840 0.88761 0.94194 0.92496 0.95465 0.89765 0.92212 0.82451 0.82079 0.73103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.80 8.65 37.16 0.32 -2.48 16 2 C 0.22 4.57 1.76 -68.86 -0.12 4.45 16 3 H 0.01 0.26 7.28 -51.93 -0.38 -0.12 16 4 C -0.52 -12.65 8.04 -34.44 -0.28 -12.93 16 5 H 0.06 1.61 6.90 -52.49 -0.36 1.25 16 6 C 0.07 1.77 5.29 -17.82 -0.09 1.67 16 7 N -0.89 -22.90 11.29 55.43 0.63 -22.28 16 8 Si 0.89 20.75 29.54 -169.99 -5.02 15.73 16 9 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 10 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 11 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 12 N -0.51 -8.79 4.00 -172.67 -0.69 -9.48 16 13 C 0.03 0.34 9.11 60.06 0.55 0.89 16 14 C 0.22 3.49 3.45 -83.77 -0.29 3.20 16 15 C -0.12 -1.62 8.61 -39.31 -0.34 -1.96 16 16 C -0.04 -0.48 9.53 -39.67 -0.38 -0.86 16 17 C -0.03 -0.46 6.88 -79.51 -0.55 -1.01 16 18 N 0.03 0.51 4.45 34.18 0.15 0.66 16 19 O -0.15 -2.27 18.44 -29.46 -0.54 -2.82 16 20 O -0.16 -2.83 16.28 -34.97 -0.57 -3.40 16 21 C -0.11 -1.69 5.56 -104.98 -0.58 -2.27 16 22 C 0.55 9.18 4.26 34.58 0.15 9.32 16 23 O -0.43 -8.87 17.84 -23.24 -0.41 -9.28 16 24 O -0.49 -6.16 13.40 -43.33 -0.58 -6.74 16 25 C 0.01 0.13 5.98 -38.85 -0.23 -0.10 16 26 Cl -0.01 -0.13 27.52 -51.86 -1.43 -1.56 16 27 H 0.01 0.23 6.66 -51.93 -0.35 -0.12 16 28 H 0.09 2.22 5.93 -51.93 -0.31 1.91 16 29 H 0.04 0.83 8.14 -51.93 -0.42 0.40 16 30 H 0.27 6.64 8.31 -40.82 -0.34 6.30 16 31 H 0.03 0.33 7.34 -51.93 -0.38 -0.05 16 32 H 0.08 1.11 6.25 -51.93 -0.32 0.79 16 33 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.16 2.01 7.04 -52.49 -0.37 1.64 16 35 H 0.16 1.70 7.60 -52.48 -0.40 1.30 16 36 H 0.41 2.77 8.96 45.56 0.41 3.18 16 LS Contribution 329.74 15.07 4.97 4.97 Total: -1.00 -30.03 329.74 -7.78 -37.82 By element: Atomic # 1 Polarization: 0.90 SS G_CDS: -2.44 Total: -1.54 kcal Atomic # 6 Polarization: -0.23 SS G_CDS: -1.84 Total: -2.08 kcal Atomic # 7 Polarization: -31.18 SS G_CDS: 0.09 Total: -31.10 kcal Atomic # 8 Polarization: -20.13 SS G_CDS: -2.11 Total: -22.24 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Atomic # 17 Polarization: -0.13 SS G_CDS: -1.43 Total: -1.56 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -30.03 -7.78 -37.82 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592221652.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.529 kcal (2) G-P(sol) polarization free energy of solvation -30.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds