Wall clock time and date at job start Tue Mar 31 2020 15:24:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09006 * 109.46976 * 2 1 4 4 C 1.50700 * 109.47495 * 239.99758 * 2 1 3 5 5 H 1.07997 * 120.00030 * 240.00103 * 4 2 1 6 6 C 1.37874 * 120.00067 * 59.99569 * 4 2 1 7 7 N 1.31516 * 119.99928 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 120.00329 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.46813 * 89.99796 * 8 6 4 10 10 H 1.48492 * 109.47193 * 210.00575 * 8 6 4 11 11 H 1.48506 * 109.46602 * 330.00466 * 8 6 4 12 12 N 1.46899 * 109.47006 * 119.99475 * 2 1 3 13 13 C 1.46896 * 110.99948 * 299.41568 * 12 2 1 14 14 C 1.39789 * 110.99931 * 175.46492 * 12 2 1 15 15 C 1.38932 * 120.00606 * 59.93760 * 14 12 2 16 16 C 1.38276 * 120.25067 * 180.02562 * 15 14 12 17 17 C 1.37952 * 120.27086 * 359.72540 * 16 15 14 18 18 N 1.48019 * 120.00266 * 180.27997 * 17 16 15 19 19 O 1.21793 * 120.00039 * 0.26769 * 18 17 16 20 20 O 1.21805 * 119.99953 * 180.27970 * 18 17 16 21 21 C 1.39696 * 119.99942 * 0.54845 * 17 16 15 22 22 C 1.47661 * 120.12319 * 179.72221 * 21 17 16 23 23 O 1.21485 * 119.99882 * 269.73044 * 22 21 17 24 24 O 1.34717 * 120.00032 * 89.45494 * 22 21 17 25 25 C 1.38793 * 120.00290 * 239.96278 * 14 12 2 26 26 Cl 1.73599 * 120.12955 * 359.95489 * 25 14 12 27 27 H 1.08992 * 109.46988 * 305.97903 * 1 2 3 28 28 H 1.09002 * 109.46573 * 65.97711 * 1 2 3 29 29 H 1.09001 * 109.46681 * 185.97248 * 1 2 3 30 30 H 0.97008 * 120.00173 * 179.97438 * 7 6 4 31 31 H 1.08998 * 109.47701 * 296.04565 * 13 12 2 32 32 H 1.08997 * 109.47535 * 56.04591 * 13 12 2 33 33 H 1.09000 * 109.47308 * 176.04564 * 13 12 2 34 34 H 1.07997 * 119.87255 * 0.02562 * 15 14 12 35 35 H 1.08006 * 119.86733 * 180.02562 * 16 15 14 36 36 H 0.96693 * 116.99749 * 0.27377 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0325 -0.7104 -1.2304 5 1 2.6534 -1.5885 -1.1312 6 6 1.6994 -0.2395 -2.4827 7 7 0.9436 0.8300 -2.6034 8 14 2.3216 -1.1205 -4.0079 9 1 1.3430 -2.1619 -4.4117 10 1 2.4868 -0.1416 -5.1122 11 1 3.6295 -1.7585 -3.7120 12 7 2.0197 -0.6924 1.1995 13 6 1.5601 -0.0181 2.4210 14 6 3.4132 -0.8011 1.1814 15 6 4.1989 0.3439 1.1374 16 6 5.5778 0.2422 1.1188 17 6 6.1843 -0.9965 1.1495 18 7 7.6609 -1.0982 1.1356 19 8 8.3406 -0.0881 1.1020 20 8 8.1962 -2.1921 1.1575 21 6 5.4047 -2.1550 1.1880 22 6 6.0509 -3.4825 1.2146 23 8 6.3004 -4.0576 0.1740 24 8 6.3689 -4.0533 2.3927 25 6 4.0121 -2.0529 1.2068 26 17 3.0338 -3.4859 1.2623 27 1 -0.3633 0.6037 0.8316 28 1 -0.3632 0.4184 -0.9387 29 1 -0.3633 -1.0221 0.1069 30 1 0.7095 1.1616 -3.4845 31 1 1.9894 0.9827 2.4671 32 1 0.4725 0.0533 2.4094 33 1 1.8774 -0.5900 3.2930 34 1 3.7309 1.3170 1.1177 35 1 6.1827 1.1364 1.0850 36 1 6.1508 -3.5575 3.1937 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592221652.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:24:13 Heat of formation + Delta-G solvation = -66.986043 kcal Electronic energy + Delta-G solvation = -26659.323193 eV Core-core repulsion = 22559.059128 eV Total energy + Delta-G solvation = -4100.264064 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.070 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.59554 -41.77891 -40.73305 -38.26266 -37.89769 -37.75230 -37.74648 -35.05141 -32.79481 -32.61163 -30.66762 -28.55363 -27.11027 -26.02434 -25.72423 -23.69297 -23.28946 -21.71211 -20.92418 -20.05610 -19.52219 -18.89175 -18.32621 -17.86012 -17.70040 -17.34103 -16.80990 -16.33585 -16.15375 -15.87863 -15.23642 -15.16084 -14.67833 -14.42424 -13.89397 -13.77769 -13.69094 -13.05853 -13.00771 -12.95518 -12.83194 -12.75359 -12.59950 -12.57587 -12.47716 -12.39637 -12.26932 -12.20366 -11.96405 -11.74932 -11.05688 -10.64391 -10.58744 -10.25972 -9.38737 -8.21159 -6.29675 -1.59082 -0.64786 -0.08826 0.01231 0.73785 0.79210 1.31070 1.36693 1.43757 1.73130 1.78960 2.32843 2.77725 3.04502 3.10870 3.14271 3.48357 3.54929 3.78465 3.90704 4.29603 4.48360 4.54046 4.68086 4.75038 4.88006 4.99543 5.03720 5.06444 5.10929 5.40909 5.62387 5.72160 5.86925 6.16916 6.22140 6.26689 6.44509 6.47375 6.81133 7.39620 8.83091 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.012350 B = 0.005401 C = 0.005138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2266.748948 B = 5183.245290 C = 5448.229517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.226 3.774 3 H 0.002 0.998 4 C -0.519 4.519 5 H 0.047 0.953 6 C 0.036 3.964 7 N -0.902 5.902 8 Si 0.925 3.075 9 H -0.277 1.277 10 H -0.279 1.279 11 H -0.285 1.285 12 N -0.520 5.520 13 C 0.023 3.977 14 C 0.200 3.800 15 C -0.109 4.109 16 C -0.018 4.018 17 C -0.034 4.034 18 N 0.032 4.968 19 O -0.115 6.115 20 O -0.206 6.206 21 C -0.110 4.110 22 C 0.563 3.437 23 O -0.482 6.482 24 O -0.478 6.478 25 C 0.001 3.999 26 Cl -0.016 7.016 27 H 0.042 0.958 28 H 0.064 0.936 29 H 0.031 0.969 30 H 0.264 0.736 31 H 0.044 0.956 32 H 0.084 0.916 33 H 0.081 0.919 34 H 0.176 0.824 35 H 0.195 0.805 36 H 0.438 0.562 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.129 1.513 14.463 15.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.122 3.878 3 H 0.019 0.981 4 C -0.557 4.557 5 H 0.066 0.934 6 C -0.165 4.165 7 N -0.542 5.542 8 Si 0.753 3.247 9 H -0.203 1.203 10 H -0.204 1.204 11 H -0.211 1.211 12 N -0.242 5.242 13 C -0.122 4.122 14 C 0.104 3.896 15 C -0.130 4.130 16 C -0.038 4.038 17 C -0.118 4.118 18 N 0.549 4.451 19 O -0.343 6.343 20 O -0.407 6.407 21 C -0.115 4.115 22 C 0.401 3.599 23 O -0.367 6.367 24 O -0.289 6.289 25 C -0.028 4.028 26 Cl 0.014 6.986 27 H 0.061 0.939 28 H 0.083 0.917 29 H 0.051 0.949 30 H 0.073 0.927 31 H 0.063 0.937 32 H 0.103 0.897 33 H 0.100 0.900 34 H 0.194 0.806 35 H 0.212 0.788 36 H 0.299 0.701 Dipole moment (debyes) X Y Z Total from point charges 3.317 0.225 13.502 13.905 hybrid contribution 0.576 0.369 -0.969 1.186 sum 3.893 0.594 12.533 13.137 Atomic orbital electron populations 1.21700 0.96304 0.99267 1.01178 1.19229 0.93206 0.90965 0.84383 0.98096 1.21293 1.31100 1.12193 0.91113 0.93429 1.25246 0.95287 0.95421 1.00562 1.69909 1.36918 1.23211 1.24128 0.86060 0.78555 0.78944 0.81153 1.20314 1.20432 1.21067 1.59936 1.03567 1.55395 1.05345 1.22595 1.02555 0.97048 0.90002 1.19005 0.91996 0.90439 0.88152 1.22136 0.92282 1.00802 0.97766 1.21252 0.95318 0.96018 0.91186 1.20856 0.78543 0.95620 1.16792 1.43589 1.03523 1.00489 0.97454 1.94493 1.62747 1.26501 1.50601 1.94627 1.74490 1.14928 1.56627 1.19796 0.92664 0.94037 1.04979 1.19679 0.73861 0.82445 0.83914 1.90894 1.50624 1.64582 1.30613 1.84561 1.76510 1.51024 1.16837 1.20741 0.88217 0.90344 1.03519 1.98413 1.69798 1.34383 1.96054 0.93909 0.91683 0.94946 0.92661 0.93745 0.89705 0.89988 0.80626 0.78782 0.70125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.08 8.65 71.98 0.62 -4.46 16 2 C 0.23 9.18 1.76 44.17 0.08 9.25 16 3 H 0.00 0.07 7.28 -2.38 -0.02 0.05 16 4 C -0.52 -25.15 8.04 25.60 0.21 -24.94 16 5 H 0.05 2.43 6.90 -2.91 -0.02 2.41 16 6 C 0.04 1.81 5.29 84.65 0.45 2.25 16 7 N -0.90 -46.49 11.29 21.45 0.24 -46.25 16 8 Si 0.93 42.62 29.54 68.60 2.03 44.65 16 9 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 10 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 11 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 12 N -0.52 -16.80 4.00 -700.20 -2.80 -19.60 16 13 C 0.02 0.54 9.11 127.69 1.16 1.71 16 14 C 0.20 6.07 3.45 38.17 0.13 6.20 16 15 C -0.11 -2.73 8.61 22.45 0.19 -2.53 16 16 C -0.02 -0.41 9.53 22.21 0.21 -0.20 16 17 C -0.03 -0.95 6.88 36.66 0.25 -0.70 16 18 N 0.03 0.96 4.45 -45.78 -0.20 0.75 16 19 O -0.11 -3.23 18.44 18.90 0.35 -2.88 16 20 O -0.21 -7.06 16.28 24.15 0.39 -6.66 16 21 C -0.11 -3.34 5.56 -20.10 -0.11 -3.45 16 22 C 0.56 18.52 4.26 70.31 0.30 18.82 16 23 O -0.48 -20.32 17.84 23.70 0.42 -19.90 16 24 O -0.48 -11.75 13.40 -53.60 -0.72 -12.47 16 25 C 0.00 0.03 5.98 22.74 0.14 0.17 16 26 Cl -0.02 -0.51 27.52 -2.72 -0.07 -0.59 16 27 H 0.04 1.43 6.66 -2.39 -0.02 1.41 16 28 H 0.06 3.03 5.93 -2.39 -0.01 3.02 16 29 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.26 13.18 8.31 -92.70 -0.77 12.41 16 31 H 0.04 0.90 7.34 -2.39 -0.02 0.88 16 32 H 0.08 1.98 6.25 -2.39 -0.01 1.96 16 33 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 34 H 0.18 3.79 7.04 -2.91 -0.02 3.77 16 35 H 0.20 3.14 7.60 -2.91 -0.02 3.12 16 36 H 0.44 5.16 8.96 -74.06 -0.66 4.50 16 Total: -1.00 -65.03 329.74 3.77 -61.26 By element: Atomic # 1 Polarization: -0.92 SS G_CDS: 0.51 Total: -0.42 kcal Atomic # 6 Polarization: -1.52 SS G_CDS: 3.63 Total: 2.11 kcal Atomic # 7 Polarization: -62.33 SS G_CDS: -2.76 Total: -65.10 kcal Atomic # 8 Polarization: -42.36 SS G_CDS: 0.45 Total: -41.91 kcal Atomic # 14 Polarization: 42.62 SS G_CDS: 2.03 Total: 44.65 kcal Atomic # 17 Polarization: -0.51 SS G_CDS: -0.07 Total: -0.59 kcal Total: -65.03 3.77 -61.26 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592221652.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.728 kcal (2) G-P(sol) polarization free energy of solvation -65.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds