Wall clock time and date at job start Tue Mar 31 2020 15:24:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09008 * 109.47113 * 2 1 4 4 C 1.50709 * 109.47079 * 119.99492 * 2 1 3 5 5 H 1.07995 * 119.99528 * 119.99636 * 4 2 1 6 6 C 1.37878 * 119.99831 * 300.00239 * 4 2 1 7 7 N 1.31513 * 119.99902 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 119.99637 * 179.97438 * 6 4 2 9 9 H 1.48494 * 109.47436 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47007 * 120.00123 * 8 6 4 11 11 H 1.48504 * 109.46947 * 239.99500 * 8 6 4 12 12 N 1.46897 * 109.47545 * 239.99670 * 2 1 3 13 13 C 1.46904 * 111.00065 * 59.89744 * 12 2 1 14 14 C 1.39782 * 111.00273 * 183.85597 * 12 2 1 15 15 C 1.38931 * 120.00166 * 302.91850 * 14 12 2 16 16 C 1.38287 * 120.24976 * 179.74553 * 15 14 12 17 17 C 1.37945 * 120.26806 * 0.55667 * 16 15 14 18 18 N 1.48020 * 119.99860 * 179.72097 * 17 16 15 19 19 O 1.21796 * 119.99883 * 359.97438 * 18 17 16 20 20 O 1.21805 * 119.99804 * 179.97438 * 18 17 16 21 21 C 1.39691 * 120.00543 * 359.70280 * 17 16 15 22 22 C 1.47658 * 120.12953 * 180.02562 * 21 17 16 23 23 O 1.21488 * 119.99824 * 269.97990 * 22 21 17 24 24 O 1.34710 * 120.00414 * 89.96954 * 22 21 17 25 25 C 1.38787 * 120.00580 * 123.19906 * 14 12 2 26 26 Cl 1.73598 * 120.13368 * 359.97438 * 25 14 12 27 27 H 1.08998 * 109.47495 * 297.39939 * 1 2 3 28 28 H 1.09002 * 109.46889 * 57.39639 * 1 2 3 29 29 H 1.08998 * 109.47292 * 177.39752 * 1 2 3 30 30 H 0.97004 * 119.99744 * 180.02562 * 7 6 4 31 31 H 1.08997 * 109.47061 * 183.96176 * 13 12 2 32 32 H 1.09007 * 109.46649 * 303.95701 * 13 12 2 33 33 H 1.08996 * 109.46793 * 63.95373 * 13 12 2 34 34 H 1.07995 * 119.87266 * 0.02936 * 15 14 12 35 35 H 1.08001 * 119.86274 * 180.27862 * 16 15 14 36 36 H 0.96705 * 117.00378 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2306 5 1 2.6531 -1.5884 1.1315 6 6 1.6992 -0.2392 2.4828 7 7 0.9426 0.8298 2.6033 8 14 2.3212 -1.1201 4.0081 9 1 3.1453 -2.2874 3.6040 10 1 3.1464 -0.1870 4.8166 11 1 1.1659 -1.5863 4.8162 12 7 2.0197 -0.6925 -1.1993 13 6 1.5468 -0.0279 -2.4211 14 6 3.4143 -0.7876 -1.1886 15 6 4.1883 0.3622 -1.0938 16 6 5.5682 0.2736 -1.0774 17 6 6.1872 -0.9559 -1.1666 18 7 7.6648 -1.0433 -1.1547 19 8 8.3340 -0.0295 -1.0666 20 8 8.2113 -2.1290 -1.2330 21 6 5.4197 -2.1187 -1.2677 22 6 6.0793 -3.4363 -1.3628 23 8 6.3638 -3.8961 -2.4507 24 8 6.3660 -4.1285 -0.2432 25 6 4.0259 -2.0302 -1.2785 26 17 3.0624 -3.4688 -1.4038 27 1 -0.3634 0.4729 0.9123 28 1 -0.3633 0.5537 -0.8657 29 1 -0.3634 -1.0266 -0.0467 30 1 0.7085 1.1615 3.4843 31 1 1.8647 -0.6004 -3.2924 32 1 0.4585 0.0328 -2.4036 33 1 1.9659 0.9769 -2.4736 34 1 3.7104 1.3284 -1.0280 35 1 6.1638 1.1712 -0.9989 36 1 6.7984 -4.9861 -0.3558 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592221661.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:24:17 Heat of formation + Delta-G solvation = -52.620245 kcal Electronic energy + Delta-G solvation = -26616.823207 eV Core-core repulsion = 22517.182091 eV Total energy + Delta-G solvation = -4099.641117 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.070 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.30355 -40.51863 -39.60383 -36.96155 -36.61683 -36.45076 -36.05870 -33.27859 -31.63446 -31.21506 -29.10855 -27.24008 -25.61285 -24.74353 -24.40825 -22.42934 -21.79930 -20.03493 -19.37651 -18.76109 -18.16196 -17.54686 -17.40661 -16.57474 -16.28602 -15.96352 -15.27489 -15.04146 -14.83926 -14.29465 -13.76929 -13.58665 -13.26536 -13.17261 -12.59788 -12.38441 -12.17062 -11.70771 -11.66998 -11.53859 -11.32496 -11.27551 -11.16711 -11.08170 -10.97102 -10.87306 -10.77741 -10.61019 -10.53177 -10.20909 -9.39834 -9.26437 -8.99535 -8.69636 -7.97514 -6.29016 -4.35056 -0.28817 0.59936 1.21683 1.29232 1.96592 2.07114 2.67891 3.09079 3.15794 3.25068 3.30469 4.02869 4.26283 4.34211 4.54587 4.72476 4.91319 5.05284 5.13419 5.20081 5.45557 5.59686 5.62458 5.88750 6.01866 6.06274 6.28992 6.37249 6.49240 6.64268 6.71940 7.02323 7.27645 7.52179 7.60256 7.72545 7.73559 7.92363 8.10139 8.69202 9.31866 10.76775 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.012251 B = 0.005383 C = 0.005101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2284.972165 B = 5200.690259 C = 5487.680415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.215 3.785 3 H 0.012 0.988 4 C -0.515 4.515 5 H 0.063 0.937 6 C 0.068 3.932 7 N -0.886 5.886 8 Si 0.891 3.109 9 H -0.270 1.270 10 H -0.282 1.282 11 H -0.281 1.281 12 N -0.511 5.511 13 C 0.026 3.974 14 C 0.215 3.785 15 C -0.115 4.115 16 C -0.037 4.037 17 C -0.029 4.029 18 N 0.036 4.964 19 O -0.146 6.146 20 O -0.167 6.167 21 C -0.040 4.040 22 C 0.545 3.455 23 O -0.487 6.487 24 O -0.494 6.494 25 C 0.009 3.991 26 Cl -0.010 7.010 27 H 0.093 0.907 28 H 0.013 0.987 29 H 0.039 0.961 30 H 0.264 0.736 31 H 0.060 0.940 32 H 0.084 0.916 33 H 0.027 0.973 34 H 0.160 0.840 35 H 0.163 0.837 36 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.766 -2.162 -7.690 9.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.112 3.888 3 H 0.029 0.971 4 C -0.553 4.553 5 H 0.081 0.919 6 C -0.135 4.135 7 N -0.523 5.523 8 Si 0.719 3.281 9 H -0.194 1.194 10 H -0.208 1.208 11 H -0.206 1.206 12 N -0.233 5.233 13 C -0.120 4.120 14 C 0.119 3.881 15 C -0.136 4.136 16 C -0.057 4.057 17 C -0.113 4.113 18 N 0.555 4.445 19 O -0.365 6.365 20 O -0.379 6.379 21 C -0.044 4.044 22 C 0.385 3.615 23 O -0.374 6.374 24 O -0.305 6.305 25 C -0.021 4.021 26 Cl 0.020 6.980 27 H 0.111 0.889 28 H 0.032 0.968 29 H 0.058 0.942 30 H 0.074 0.926 31 H 0.079 0.921 32 H 0.103 0.897 33 H 0.046 0.954 34 H 0.177 0.823 35 H 0.181 0.819 36 H 0.277 0.723 Dipole moment (debyes) X Y Z Total from point charges 3.523 -2.397 -7.808 8.895 hybrid contribution 1.119 -0.311 0.965 1.510 sum 4.642 -2.708 -6.843 8.701 Atomic orbital electron populations 1.21874 0.96444 0.99984 1.00995 1.19555 0.93253 0.91906 0.84038 0.97064 1.21105 1.31734 1.12823 0.89591 0.91866 1.24847 0.94724 0.94832 0.99065 1.69859 1.35988 1.22559 1.23942 0.86515 0.78928 0.79973 0.82712 1.19397 1.20820 1.20636 1.60106 1.02396 1.55496 1.05319 1.22477 1.02320 0.96111 0.91119 1.18821 0.92168 0.89693 0.87449 1.21937 0.92095 1.00762 0.98768 1.20899 0.95351 0.95766 0.93636 1.20682 0.79151 0.95192 1.16305 1.43382 1.03160 1.00532 0.97474 1.94518 1.63428 1.26002 1.52538 1.94530 1.73301 1.15897 1.54131 1.18394 0.91933 0.90657 1.03394 1.20016 0.74914 0.84084 0.82453 1.90925 1.49165 1.68504 1.28756 1.84625 1.73488 1.36567 1.35869 1.20638 0.88002 0.90386 1.03041 1.98404 1.70416 1.33624 1.95603 0.88888 0.96789 0.94156 0.92587 0.92137 0.89693 0.95413 0.82298 0.81932 0.72306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.81 8.69 37.16 0.32 -2.49 16 2 C 0.22 4.56 1.73 -68.86 -0.12 4.44 16 3 H 0.01 0.26 7.11 -51.92 -0.37 -0.11 16 4 C -0.51 -12.48 8.04 -34.44 -0.28 -12.75 16 5 H 0.06 1.59 7.09 -52.49 -0.37 1.22 16 6 C 0.07 1.71 5.30 -17.82 -0.09 1.62 16 7 N -0.89 -22.73 11.30 55.43 0.63 -22.10 16 8 Si 0.89 20.16 29.54 -169.99 -5.02 15.14 16 9 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 10 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 11 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 12 N -0.51 -9.13 4.00 -172.67 -0.69 -9.82 16 13 C 0.03 0.37 9.12 60.07 0.55 0.92 16 14 C 0.22 3.69 3.42 -83.77 -0.29 3.41 16 15 C -0.11 -1.72 8.62 -39.31 -0.34 -2.06 16 16 C -0.04 -0.52 9.53 -39.67 -0.38 -0.89 16 17 C -0.03 -0.48 6.88 -79.51 -0.55 -1.02 16 18 N 0.04 0.60 4.45 34.18 0.15 0.76 16 19 O -0.15 -2.36 18.44 -29.46 -0.54 -2.91 16 20 O -0.17 -2.96 16.29 -34.87 -0.57 -3.53 16 21 C -0.04 -0.68 5.75 -104.98 -0.60 -1.29 16 22 C 0.54 9.08 4.19 34.58 0.14 9.23 16 23 O -0.49 -8.75 17.77 -23.33 -0.41 -9.16 16 24 O -0.49 -6.97 13.37 -43.06 -0.58 -7.55 16 25 C 0.01 0.15 6.17 -38.85 -0.24 -0.09 16 26 Cl -0.01 -0.17 27.52 -51.86 -1.43 -1.60 16 27 H 0.09 2.19 6.00 -51.93 -0.31 1.87 16 28 H 0.01 0.24 6.46 -51.93 -0.34 -0.09 16 29 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.26 6.54 8.31 -40.82 -0.34 6.20 16 31 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.08 1.18 6.15 -51.93 -0.32 0.86 16 33 H 0.03 0.36 7.51 -51.93 -0.39 -0.03 16 34 H 0.16 2.15 7.03 -52.49 -0.37 1.78 16 35 H 0.16 1.83 7.60 -52.49 -0.40 1.43 16 36 H 0.42 3.59 9.11 45.56 0.42 4.00 16 LS Contribution 330.13 15.07 4.97 4.97 Total: -1.00 -28.76 330.13 -7.79 -36.55 By element: Atomic # 1 Polarization: 2.66 SS G_CDS: -2.43 Total: 0.23 kcal Atomic # 6 Polarization: 0.89 SS G_CDS: -1.87 Total: -0.98 kcal Atomic # 7 Polarization: -31.26 SS G_CDS: 0.09 Total: -31.17 kcal Atomic # 8 Polarization: -21.04 SS G_CDS: -2.10 Total: -23.15 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.02 Total: 15.14 kcal Atomic # 17 Polarization: -0.17 SS G_CDS: -1.43 Total: -1.60 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -28.76 -7.79 -36.55 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592221661.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.068 kcal (2) G-P(sol) polarization free energy of solvation -28.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds