Wall clock time and date at job start Tue Mar 31 2020 15:24:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09008 * 109.47113 * 2 1 4 4 C 1.50709 * 109.47079 * 119.99492 * 2 1 3 5 5 H 1.07995 * 119.99528 * 119.99636 * 4 2 1 6 6 C 1.37878 * 119.99831 * 300.00239 * 4 2 1 7 7 N 1.31513 * 119.99902 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 119.99637 * 179.97438 * 6 4 2 9 9 H 1.48494 * 109.47436 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47007 * 120.00123 * 8 6 4 11 11 H 1.48504 * 109.46947 * 239.99500 * 8 6 4 12 12 N 1.46897 * 109.47545 * 239.99670 * 2 1 3 13 13 C 1.46904 * 111.00065 * 59.89744 * 12 2 1 14 14 C 1.39782 * 111.00273 * 183.85597 * 12 2 1 15 15 C 1.38931 * 120.00166 * 302.91850 * 14 12 2 16 16 C 1.38287 * 120.24976 * 179.74553 * 15 14 12 17 17 C 1.37945 * 120.26806 * 0.55667 * 16 15 14 18 18 N 1.48020 * 119.99860 * 179.72097 * 17 16 15 19 19 O 1.21796 * 119.99883 * 359.97438 * 18 17 16 20 20 O 1.21805 * 119.99804 * 179.97438 * 18 17 16 21 21 C 1.39691 * 120.00543 * 359.70280 * 17 16 15 22 22 C 1.47658 * 120.12953 * 180.02562 * 21 17 16 23 23 O 1.21488 * 119.99824 * 269.97990 * 22 21 17 24 24 O 1.34710 * 120.00414 * 89.96954 * 22 21 17 25 25 C 1.38787 * 120.00580 * 123.19906 * 14 12 2 26 26 Cl 1.73598 * 120.13368 * 359.97438 * 25 14 12 27 27 H 1.08998 * 109.47495 * 297.39939 * 1 2 3 28 28 H 1.09002 * 109.46889 * 57.39639 * 1 2 3 29 29 H 1.08998 * 109.47292 * 177.39752 * 1 2 3 30 30 H 0.97004 * 119.99744 * 180.02562 * 7 6 4 31 31 H 1.08997 * 109.47061 * 183.96176 * 13 12 2 32 32 H 1.09007 * 109.46649 * 303.95701 * 13 12 2 33 33 H 1.08996 * 109.46793 * 63.95373 * 13 12 2 34 34 H 1.07995 * 119.87266 * 0.02936 * 15 14 12 35 35 H 1.08001 * 119.86274 * 180.27862 * 16 15 14 36 36 H 0.96705 * 117.00378 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2306 5 1 2.6531 -1.5884 1.1315 6 6 1.6992 -0.2392 2.4828 7 7 0.9426 0.8298 2.6033 8 14 2.3212 -1.1201 4.0081 9 1 3.1453 -2.2874 3.6040 10 1 3.1464 -0.1870 4.8166 11 1 1.1659 -1.5863 4.8162 12 7 2.0197 -0.6925 -1.1993 13 6 1.5468 -0.0279 -2.4211 14 6 3.4143 -0.7876 -1.1886 15 6 4.1883 0.3622 -1.0938 16 6 5.5682 0.2736 -1.0774 17 6 6.1872 -0.9559 -1.1666 18 7 7.6648 -1.0433 -1.1547 19 8 8.3340 -0.0295 -1.0666 20 8 8.2113 -2.1290 -1.2330 21 6 5.4197 -2.1187 -1.2677 22 6 6.0793 -3.4363 -1.3628 23 8 6.3638 -3.8961 -2.4507 24 8 6.3660 -4.1285 -0.2432 25 6 4.0259 -2.0302 -1.2785 26 17 3.0624 -3.4688 -1.4038 27 1 -0.3634 0.4729 0.9123 28 1 -0.3633 0.5537 -0.8657 29 1 -0.3634 -1.0266 -0.0467 30 1 0.7085 1.1615 3.4843 31 1 1.8647 -0.6004 -3.2924 32 1 0.4585 0.0328 -2.4036 33 1 1.9659 0.9769 -2.4736 34 1 3.7104 1.3284 -1.0280 35 1 6.1638 1.1712 -0.9989 36 1 6.7984 -4.9861 -0.3558 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592221661.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:24:17 Heat of formation + Delta-G solvation = -68.685910 kcal Electronic energy + Delta-G solvation = -26617.519867 eV Core-core repulsion = 22517.182091 eV Total energy + Delta-G solvation = -4100.337776 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.070 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.59804 -41.79085 -40.88372 -38.33116 -37.91910 -37.74957 -37.29280 -35.02132 -32.87961 -32.61148 -30.65622 -28.56681 -27.16051 -26.14890 -25.76151 -23.68722 -23.16581 -21.51612 -20.63971 -20.06368 -19.44917 -18.88542 -18.80101 -18.03732 -17.72771 -17.34391 -16.78293 -16.28675 -16.12022 -15.88040 -15.17577 -14.91077 -14.58723 -14.43018 -13.90823 -13.78742 -13.56963 -13.01466 -12.98546 -12.95706 -12.79765 -12.70802 -12.59042 -12.55714 -12.48153 -12.39824 -12.28087 -12.22817 -12.01386 -11.87717 -11.01752 -10.64308 -10.55689 -10.25547 -9.37766 -8.17139 -6.26135 -1.56502 -0.62790 -0.05946 0.00703 0.69583 0.77969 1.34884 1.41730 1.48973 1.50388 1.86329 2.36860 2.77232 3.11924 3.14905 3.37046 3.54142 3.68964 3.89056 4.01359 4.30956 4.46961 4.52779 4.68171 4.75616 4.86972 4.99410 5.03647 5.07411 5.11814 5.24146 5.42924 5.65640 5.72794 6.18819 6.22454 6.29631 6.45479 6.64765 6.84136 7.42984 8.87619 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.012251 B = 0.005383 C = 0.005101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2284.972165 B = 5200.690259 C = 5487.680415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.224 3.776 3 H 0.002 0.998 4 C -0.517 4.517 5 H 0.050 0.950 6 C 0.032 3.968 7 N -0.906 5.906 8 Si 0.931 3.069 9 H -0.276 1.276 10 H -0.281 1.281 11 H -0.281 1.281 12 N -0.519 5.519 13 C 0.023 3.977 14 C 0.200 3.800 15 C -0.110 4.110 16 C -0.019 4.019 17 C -0.038 4.038 18 N 0.034 4.966 19 O -0.119 6.119 20 O -0.201 6.201 21 C -0.055 4.055 22 C 0.547 3.453 23 O -0.507 6.507 24 O -0.494 6.494 25 C -0.002 4.002 26 Cl -0.015 7.015 27 H 0.065 0.935 28 H 0.042 0.958 29 H 0.030 0.970 30 H 0.263 0.737 31 H 0.075 0.925 32 H 0.088 0.912 33 H 0.044 0.956 34 H 0.177 0.823 35 H 0.197 0.803 36 H 0.439 0.561 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.276 -1.201 -8.212 9.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.120 3.880 3 H 0.019 0.981 4 C -0.555 4.555 5 H 0.068 0.932 6 C -0.168 4.168 7 N -0.545 5.545 8 Si 0.759 3.241 9 H -0.201 1.201 10 H -0.207 1.207 11 H -0.207 1.207 12 N -0.241 5.241 13 C -0.122 4.122 14 C 0.104 3.896 15 C -0.131 4.131 16 C -0.039 4.039 17 C -0.122 4.122 18 N 0.552 4.448 19 O -0.346 6.346 20 O -0.403 6.403 21 C -0.059 4.059 22 C 0.389 3.611 23 O -0.396 6.396 24 O -0.308 6.308 25 C -0.031 4.031 26 Cl 0.014 6.986 27 H 0.084 0.916 28 H 0.061 0.939 29 H 0.050 0.950 30 H 0.073 0.927 31 H 0.094 0.906 32 H 0.106 0.894 33 H 0.063 0.937 34 H 0.195 0.805 35 H 0.214 0.786 36 H 0.302 0.698 Dipole moment (debyes) X Y Z Total from point charges 4.044 -1.545 -8.339 9.396 hybrid contribution 1.018 -0.568 1.092 1.598 sum 5.063 -2.113 -7.246 9.089 Atomic orbital electron populations 1.21707 0.96330 0.99490 1.00894 1.19274 0.93205 0.91110 0.84459 0.98052 1.21294 1.31092 1.12193 0.90925 0.93221 1.25320 0.95244 0.95465 1.00810 1.69933 1.37010 1.23464 1.24083 0.85904 0.78334 0.78975 0.80935 1.20093 1.20658 1.20667 1.59907 1.03114 1.55742 1.05379 1.22590 1.02583 0.97054 0.89963 1.18964 0.92062 0.90272 0.88326 1.22135 0.92353 1.00741 0.97874 1.21252 0.95194 0.96072 0.91334 1.20884 0.78785 0.95777 1.16736 1.43467 1.03439 1.00474 0.97404 1.94490 1.63579 1.25744 1.50760 1.94546 1.73542 1.16177 1.56083 1.18551 0.92077 0.91356 1.03876 1.20017 0.74497 0.84103 0.82525 1.90906 1.50201 1.69044 1.29474 1.84581 1.73406 1.37909 1.34929 1.20723 0.88166 0.90469 1.03769 1.98394 1.70510 1.33958 1.95690 0.91601 0.93941 0.95047 0.92734 0.90619 0.89364 0.93706 0.80529 0.78585 0.69802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.13 8.69 71.98 0.63 -4.50 16 2 C 0.22 9.18 1.73 44.17 0.08 9.26 16 3 H 0.00 0.09 7.11 -2.38 -0.02 0.07 16 4 C -0.52 -24.74 8.04 25.60 0.21 -24.54 16 5 H 0.05 2.48 7.09 -2.91 -0.02 2.46 16 6 C 0.03 1.60 5.30 84.66 0.45 2.05 16 7 N -0.91 -46.24 11.30 21.45 0.24 -46.00 16 8 Si 0.93 41.08 29.54 68.60 2.03 43.10 16 9 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 10 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 11 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 12 N -0.52 -17.70 4.00 -700.19 -2.80 -20.50 16 13 C 0.02 0.60 9.12 127.69 1.16 1.77 16 14 C 0.20 6.53 3.42 38.17 0.13 6.66 16 15 C -0.11 -3.02 8.62 22.45 0.19 -2.82 16 16 C -0.02 -0.48 9.53 22.21 0.21 -0.27 16 17 C -0.04 -1.16 6.88 36.66 0.25 -0.91 16 18 N 0.03 1.08 4.45 -45.79 -0.20 0.88 16 19 O -0.12 -3.52 18.44 18.89 0.35 -3.17 16 20 O -0.20 -6.95 16.29 24.05 0.39 -6.56 16 21 C -0.05 -1.82 5.75 -20.09 -0.12 -1.94 16 22 C 0.55 17.98 4.19 70.31 0.29 18.28 16 23 O -0.51 -18.15 17.77 23.77 0.42 -17.73 16 24 O -0.49 -13.63 13.37 -53.76 -0.72 -14.35 16 25 C 0.00 -0.07 6.17 22.75 0.14 0.07 16 26 Cl -0.02 -0.50 27.52 -2.72 -0.07 -0.58 16 27 H 0.07 3.07 6.00 -2.39 -0.01 3.05 16 28 H 0.04 1.44 6.46 -2.39 -0.02 1.42 16 29 H 0.03 1.28 8.14 -2.39 -0.02 1.27 16 30 H 0.26 12.98 8.31 -92.71 -0.77 12.21 16 31 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 32 H 0.09 2.22 6.15 -2.38 -0.01 2.21 16 33 H 0.04 1.02 7.51 -2.39 -0.02 1.00 16 34 H 0.18 4.20 7.03 -2.91 -0.02 4.18 16 35 H 0.20 3.56 7.60 -2.91 -0.02 3.54 16 36 H 0.44 7.20 9.11 -74.05 -0.67 6.53 16 Total: -1.00 -60.61 330.13 3.75 -56.86 By element: Atomic # 1 Polarization: 4.44 SS G_CDS: 0.49 Total: 4.93 kcal Atomic # 6 Polarization: -0.52 SS G_CDS: 3.63 Total: 3.11 kcal Atomic # 7 Polarization: -62.86 SS G_CDS: -2.76 Total: -65.62 kcal Atomic # 8 Polarization: -42.25 SS G_CDS: 0.44 Total: -41.81 kcal Atomic # 14 Polarization: 41.08 SS G_CDS: 2.03 Total: 43.10 kcal Atomic # 17 Polarization: -0.50 SS G_CDS: -0.07 Total: -0.58 kcal Total: -60.61 3.75 -56.86 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592221661.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.830 kcal (2) G-P(sol) polarization free energy of solvation -60.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds