Wall clock time and date at job start Tue Mar 31 2020 15:15:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.46978 * 2 1 4 4 H 1.08997 * 109.47001 * 55.00222 * 3 2 1 5 5 C 1.50702 * 109.47138 * 175.00081 * 3 2 1 6 6 H 1.08001 * 119.99710 * 119.99991 * 5 3 2 7 7 C 1.37876 * 119.99701 * 300.00435 * 5 3 2 8 8 N 1.31508 * 120.00495 * 359.97438 * 7 5 3 9 9 Si 1.86804 * 119.99687 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47289 * 89.99430 * 9 7 5 11 11 H 1.48494 * 109.47355 * 210.00034 * 9 7 5 12 12 H 1.48503 * 109.46983 * 329.99737 * 9 7 5 13 13 N 1.46502 * 109.47103 * 295.00328 * 3 2 1 14 14 C 1.39781 * 119.99882 * 84.99891 * 13 3 2 15 15 C 1.38931 * 120.00738 * 0.02562 * 14 13 3 16 16 C 1.38285 * 120.25327 * 179.97438 * 15 14 13 17 17 C 1.37948 * 120.26383 * 359.69700 * 16 15 14 18 18 N 1.48029 * 119.99622 * 180.27314 * 17 16 15 19 19 O 1.21802 * 119.99794 * 0.28441 * 18 17 16 20 20 O 1.21793 * 120.00086 * 180.28039 * 18 17 16 21 21 C 1.39682 * 120.00813 * 0.56128 * 17 16 15 22 22 C 1.47662 * 120.12872 * 179.74467 * 21 17 16 23 23 O 1.21483 * 119.99875 * 269.71934 * 22 21 17 24 24 O 1.34718 * 120.00195 * 89.43909 * 22 21 17 25 25 C 1.38783 * 120.00687 * 179.97438 * 14 13 3 26 26 Cl 1.73609 * 120.12708 * 0.04990 * 25 14 13 27 27 H 1.08995 * 109.47281 * 59.99617 * 1 2 3 28 28 H 1.09004 * 109.46891 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47031 * 299.99443 * 1 2 3 30 30 H 1.09001 * 109.47031 * 240.00557 * 2 1 3 31 31 H 1.09000 * 109.47444 * 119.99925 * 2 1 3 32 32 H 0.97001 * 120.00102 * 180.02562 * 8 7 5 33 33 H 0.97000 * 119.99729 * 264.99681 * 13 3 2 34 34 H 1.07995 * 119.87317 * 359.97438 * 15 14 13 35 35 H 1.07996 * 119.86654 * 179.97438 * 16 15 14 36 36 H 0.96702 * 116.99984 * 0.27972 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4444 0.1238 6 1 4.1471 1.8890 -0.6524 7 6 4.1432 0.8784 1.2279 8 7 3.4062 0.3374 2.1732 9 14 6.0050 0.8801 1.3810 10 1 6.4428 2.1130 2.0835 11 1 6.4391 -0.3110 2.1543 12 1 6.6130 0.8396 0.0268 13 7 1.6523 2.0976 -1.2518 14 6 0.3898 2.6854 -1.3711 15 6 -0.4974 2.6492 -0.3025 16 6 -1.7475 3.2296 -0.4148 17 6 -2.1211 3.8546 -1.5865 18 7 -3.4585 4.4793 -1.6981 19 8 -4.2269 4.4459 -0.7537 20 8 -3.7903 5.0266 -2.7343 21 6 -1.2399 3.8928 -2.6696 22 6 -1.6392 4.5562 -3.9269 23 8 -2.1943 3.9193 -4.7999 24 8 -1.3931 5.8688 -4.1037 25 6 0.0226 3.3064 -2.5567 26 17 1.1283 3.3540 -3.8943 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 3.8293 -0.0604 2.9501 33 1 2.2718 2.1233 -1.9978 34 1 -0.2096 2.1658 0.6193 35 1 -2.4323 3.1974 0.4196 36 1 -0.9491 6.3334 -3.3810 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001595030524.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:15:57 Heat of formation + Delta-G solvation = -69.053931 kcal Electronic energy + Delta-G solvation = -26073.832337 eV Core-core repulsion = 21973.478602 eV Total energy + Delta-G solvation = -4100.353735 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.070 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.16968 -40.47668 -39.40636 -36.89628 -36.61649 -36.51929 -36.42393 -33.50296 -32.01725 -31.32402 -30.29406 -27.48456 -25.72869 -24.69062 -23.42152 -22.59600 -21.92222 -20.30340 -19.65714 -18.80456 -18.05763 -17.74583 -17.46992 -16.59811 -16.41375 -15.93903 -15.40336 -15.28689 -14.77036 -14.67969 -14.20153 -13.97621 -13.53906 -13.11068 -13.00056 -12.34587 -12.14714 -11.90354 -11.69619 -11.65798 -11.52082 -11.40304 -11.31429 -11.19708 -11.06954 -11.05057 -10.87657 -10.57547 -10.45731 -10.37531 -9.98878 -9.49259 -9.35119 -8.83424 -7.58433 -6.51954 -4.63020 -0.12612 0.58175 1.33032 1.43942 1.84960 1.99810 2.92038 3.02554 3.09702 3.11467 3.12329 3.50688 4.03406 4.06754 4.37202 4.60755 4.78337 4.81936 4.89979 5.17787 5.55828 5.70580 5.79044 5.82909 6.02544 6.09236 6.35785 6.45301 6.51235 6.69552 6.84914 6.98295 7.23378 7.31629 7.41979 7.47322 7.67584 7.72917 7.92273 8.40732 9.06291 10.53476 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.018041 B = 0.003896 C = 0.003449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1551.663026 B = 7185.557927 C = 8116.026838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.136 4.136 3 C 0.260 3.740 4 H 0.052 0.948 5 C -0.543 4.543 6 H 0.065 0.935 7 C 0.073 3.927 8 N -0.880 5.880 9 Si 0.906 3.094 10 H -0.277 1.277 11 H -0.282 1.282 12 H -0.272 1.272 13 N -0.672 5.672 14 C 0.292 3.708 15 C -0.174 4.174 16 C -0.002 4.002 17 C -0.098 4.098 18 N 0.044 4.956 19 O -0.163 6.163 20 O -0.183 6.183 21 C -0.049 4.049 22 C 0.555 3.445 23 O -0.437 6.437 24 O -0.486 6.486 25 C -0.108 4.108 26 Cl -0.037 7.037 27 H 0.041 0.959 28 H 0.041 0.959 29 H 0.052 0.948 30 H 0.042 0.958 31 H 0.110 0.890 32 H 0.270 0.730 33 H 0.404 0.596 34 H 0.173 0.827 35 H 0.160 0.840 36 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.191 5.163 -3.327 7.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.174 4.174 3 C 0.159 3.841 4 H 0.070 0.930 5 C -0.581 4.581 6 H 0.083 0.917 7 C -0.132 4.132 8 N -0.517 5.517 9 Si 0.732 3.268 10 H -0.203 1.203 11 H -0.208 1.208 12 H -0.197 1.197 13 N -0.286 5.286 14 C 0.171 3.829 15 C -0.197 4.197 16 C -0.023 4.023 17 C -0.187 4.187 18 N 0.557 4.443 19 O -0.378 6.378 20 O -0.390 6.390 21 C -0.054 4.054 22 C 0.392 3.608 23 O -0.320 6.320 24 O -0.294 6.294 25 C -0.142 4.142 26 Cl -0.008 7.008 27 H 0.060 0.940 28 H 0.060 0.940 29 H 0.071 0.929 30 H 0.061 0.939 31 H 0.128 0.872 32 H 0.080 0.920 33 H 0.241 0.759 34 H 0.190 0.810 35 H 0.177 0.823 36 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges -3.814 4.212 -4.006 6.953 hybrid contribution 1.282 0.219 0.271 1.328 sum -2.532 4.431 -3.735 6.324 Atomic orbital electron populations 1.22262 0.98830 1.00425 1.00051 1.22085 0.92221 0.99360 1.03763 1.19240 0.95976 0.89377 0.79486 0.92993 1.21065 0.89718 1.40325 1.06977 0.91669 1.24841 0.99208 0.94081 0.95036 1.69814 1.35695 1.36853 1.09323 0.86363 0.83915 0.77973 0.78505 1.20277 1.20788 1.19679 1.46438 1.10489 1.52421 1.19278 1.17949 0.87622 0.86798 0.90560 1.21289 0.92526 1.05446 1.00479 1.20715 0.96235 0.90273 0.95028 1.20329 0.85417 1.14783 0.98135 1.43387 1.02287 0.98588 1.00012 1.94507 1.48500 1.64006 1.30786 1.94567 1.80777 1.45230 1.18410 1.19582 0.92492 0.99309 0.94012 1.19673 0.75680 0.80607 0.84840 1.90898 1.36467 1.61102 1.43491 1.84599 1.73971 1.22262 1.48589 1.19945 0.92141 1.10719 0.91354 1.98395 1.61079 1.97393 1.43890 0.93974 0.94012 0.92935 0.93907 0.87219 0.92032 0.75867 0.81015 0.82258 0.72850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.48 8.22 37.16 0.31 -2.18 16 2 C -0.14 -2.54 5.45 -26.73 -0.15 -2.69 16 3 C 0.26 4.97 2.20 -69.08 -0.15 4.82 16 4 H 0.05 1.05 6.48 -51.93 -0.34 0.72 16 5 C -0.54 -11.97 8.73 -34.44 -0.30 -12.27 16 6 H 0.07 1.43 7.74 -52.49 -0.41 1.02 16 7 C 0.07 1.67 5.29 -17.82 -0.09 1.57 16 8 N -0.88 -20.76 11.29 55.43 0.63 -20.13 16 9 Si 0.91 18.23 29.54 -169.99 -5.02 13.21 16 10 H -0.28 -5.62 7.11 56.52 0.40 -5.21 16 11 H -0.28 -5.74 7.11 56.52 0.40 -5.33 16 12 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 13 N -0.67 -10.79 5.13 -53.28 -0.27 -11.06 16 14 C 0.29 4.22 5.48 -83.78 -0.46 3.76 16 15 C -0.17 -2.31 6.72 -39.31 -0.26 -2.58 16 16 C 0.00 -0.02 9.53 -39.67 -0.38 -0.40 16 17 C -0.10 -1.40 6.88 -79.51 -0.55 -1.94 16 18 N 0.04 0.70 4.45 34.18 0.15 0.85 16 19 O -0.16 -2.55 18.44 -29.46 -0.54 -3.10 16 20 O -0.18 -3.15 16.28 -34.97 -0.57 -3.72 16 21 C -0.05 -0.70 5.56 -104.98 -0.58 -1.28 16 22 C 0.56 8.54 4.26 34.58 0.15 8.68 16 23 O -0.44 -8.26 17.84 -23.25 -0.41 -8.68 16 24 O -0.49 -5.99 13.40 -43.33 -0.58 -6.58 16 25 C -0.11 -1.51 6.37 -38.85 -0.25 -1.76 16 26 Cl -0.04 -0.49 26.67 -51.86 -1.38 -1.87 16 27 H 0.04 0.64 5.39 -51.93 -0.28 0.36 16 28 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 29 H 0.05 0.76 6.35 -51.93 -0.33 0.43 16 30 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.11 2.35 5.95 -51.93 -0.31 2.05 16 32 H 0.27 6.14 8.31 -40.82 -0.34 5.80 16 33 H 0.40 6.32 7.21 -40.82 -0.29 6.03 16 34 H 0.17 2.31 3.99 -52.49 -0.21 2.10 16 35 H 0.16 1.65 7.60 -52.49 -0.40 1.25 16 36 H 0.42 2.84 8.96 45.56 0.41 3.25 16 LS Contribution 323.32 15.07 4.87 4.87 Total: -1.00 -26.49 323.32 -7.99 -34.48 By element: Atomic # 1 Polarization: 10.11 SS G_CDS: -2.14 Total: 7.97 kcal Atomic # 6 Polarization: -3.54 SS G_CDS: -2.72 Total: -6.26 kcal Atomic # 7 Polarization: -30.84 SS G_CDS: 0.50 Total: -30.34 kcal Atomic # 8 Polarization: -19.96 SS G_CDS: -2.11 Total: -22.07 kcal Atomic # 14 Polarization: 18.23 SS G_CDS: -5.02 Total: 13.21 kcal Atomic # 17 Polarization: -0.49 SS G_CDS: -1.38 Total: -1.87 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -26.49 -7.99 -34.48 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001595030524.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.576 kcal (2) G-P(sol) polarization free energy of solvation -26.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds