Wall clock time and date at job start Tue Mar 31 2020 15:15:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.46978 * 2 1 4 4 H 1.08997 * 109.47001 * 55.00222 * 3 2 1 5 5 C 1.50702 * 109.47138 * 175.00081 * 3 2 1 6 6 H 1.08001 * 119.99710 * 119.99991 * 5 3 2 7 7 C 1.37876 * 119.99701 * 300.00435 * 5 3 2 8 8 N 1.31508 * 120.00495 * 359.97438 * 7 5 3 9 9 Si 1.86804 * 119.99687 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47289 * 89.99430 * 9 7 5 11 11 H 1.48494 * 109.47355 * 210.00034 * 9 7 5 12 12 H 1.48503 * 109.46983 * 329.99737 * 9 7 5 13 13 N 1.46502 * 109.47103 * 295.00328 * 3 2 1 14 14 C 1.39781 * 119.99882 * 84.99891 * 13 3 2 15 15 C 1.38931 * 120.00738 * 0.02562 * 14 13 3 16 16 C 1.38285 * 120.25327 * 179.97438 * 15 14 13 17 17 C 1.37948 * 120.26383 * 359.69700 * 16 15 14 18 18 N 1.48029 * 119.99622 * 180.27314 * 17 16 15 19 19 O 1.21802 * 119.99794 * 0.28441 * 18 17 16 20 20 O 1.21793 * 120.00086 * 180.28039 * 18 17 16 21 21 C 1.39682 * 120.00813 * 0.56128 * 17 16 15 22 22 C 1.47662 * 120.12872 * 179.74467 * 21 17 16 23 23 O 1.21483 * 119.99875 * 269.71934 * 22 21 17 24 24 O 1.34718 * 120.00195 * 89.43909 * 22 21 17 25 25 C 1.38783 * 120.00687 * 179.97438 * 14 13 3 26 26 Cl 1.73609 * 120.12708 * 0.04990 * 25 14 13 27 27 H 1.08995 * 109.47281 * 59.99617 * 1 2 3 28 28 H 1.09004 * 109.46891 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47031 * 299.99443 * 1 2 3 30 30 H 1.09001 * 109.47031 * 240.00557 * 2 1 3 31 31 H 1.09000 * 109.47444 * 119.99925 * 2 1 3 32 32 H 0.97001 * 120.00102 * 180.02562 * 8 7 5 33 33 H 0.97000 * 119.99729 * 264.99681 * 13 3 2 34 34 H 1.07995 * 119.87317 * 359.97438 * 15 14 13 35 35 H 1.07996 * 119.86654 * 179.97438 * 16 15 14 36 36 H 0.96702 * 116.99984 * 0.27972 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4444 0.1238 6 1 4.1471 1.8890 -0.6524 7 6 4.1432 0.8784 1.2279 8 7 3.4062 0.3374 2.1732 9 14 6.0050 0.8801 1.3810 10 1 6.4428 2.1130 2.0835 11 1 6.4391 -0.3110 2.1543 12 1 6.6130 0.8396 0.0268 13 7 1.6523 2.0976 -1.2518 14 6 0.3898 2.6854 -1.3711 15 6 -0.4974 2.6492 -0.3025 16 6 -1.7475 3.2296 -0.4148 17 6 -2.1211 3.8546 -1.5865 18 7 -3.4585 4.4793 -1.6981 19 8 -4.2269 4.4459 -0.7537 20 8 -3.7903 5.0266 -2.7343 21 6 -1.2399 3.8928 -2.6696 22 6 -1.6392 4.5562 -3.9269 23 8 -2.1943 3.9193 -4.7999 24 8 -1.3931 5.8688 -4.1037 25 6 0.0226 3.3064 -2.5567 26 17 1.1283 3.3540 -3.8943 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 3.8293 -0.0604 2.9501 33 1 2.2718 2.1233 -1.9978 34 1 -0.2096 2.1658 0.6193 35 1 -2.4323 3.1974 0.4196 36 1 -0.9491 6.3334 -3.3810 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001595030524.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:15:56 Heat of formation + Delta-G solvation = -83.177429 kcal Electronic energy + Delta-G solvation = -26074.444777 eV Core-core repulsion = 21973.478602 eV Total energy + Delta-G solvation = -4100.966176 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.070 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.37988 -41.66235 -40.60439 -38.08932 -37.84181 -37.69792 -37.67099 -35.00038 -33.36708 -32.57342 -31.54127 -28.93013 -27.05824 -25.86224 -24.91035 -23.74198 -23.13121 -21.66851 -20.81337 -20.03743 -19.28102 -19.14343 -18.68392 -17.83606 -17.74386 -17.24267 -16.85172 -16.37730 -16.16807 -15.92036 -15.40952 -15.18518 -14.71247 -14.58711 -14.24288 -13.70981 -13.35268 -13.21791 -13.01390 -12.87979 -12.83246 -12.77399 -12.71731 -12.55945 -12.34060 -12.32299 -12.16426 -12.14813 -11.78074 -11.73702 -11.40127 -11.05379 -10.51957 -10.44631 -8.83562 -8.23618 -6.37582 -1.33521 -0.52045 0.15651 0.24674 0.71584 0.80379 1.42139 1.47217 1.52924 1.78011 1.97581 2.22292 2.45506 3.06961 3.08826 3.26890 3.50422 3.65567 3.76831 4.03040 4.41134 4.48817 4.55797 4.61287 4.68164 4.88634 4.99967 5.19376 5.24587 5.30739 5.46743 5.57273 5.76724 5.90688 5.97571 6.15134 6.45716 6.49133 6.50951 6.75827 7.33425 8.80403 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.018041 B = 0.003896 C = 0.003449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1551.663026 B = 7185.557927 C = 8116.026838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.130 4.130 3 C 0.270 3.730 4 H 0.043 0.957 5 C -0.553 4.553 6 H 0.062 0.938 7 C 0.034 3.966 8 N -0.901 5.901 9 Si 0.953 3.047 10 H -0.278 1.278 11 H -0.286 1.286 12 H -0.272 1.272 13 N -0.677 5.677 14 C 0.289 3.711 15 C -0.170 4.170 16 C 0.016 3.984 17 C -0.098 4.098 18 N 0.045 4.955 19 O -0.144 6.144 20 O -0.222 6.222 21 C -0.049 4.049 22 C 0.561 3.439 23 O -0.480 6.480 24 O -0.482 6.482 25 C -0.102 4.102 26 Cl -0.031 7.031 27 H 0.047 0.953 28 H 0.049 0.951 29 H 0.064 0.936 30 H 0.032 0.968 31 H 0.082 0.918 32 H 0.268 0.732 33 H 0.406 0.594 34 H 0.176 0.824 35 H 0.188 0.812 36 H 0.438 0.562 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.538 5.628 -2.835 7.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.169 4.169 3 C 0.168 3.832 4 H 0.061 0.939 5 C -0.591 4.591 6 H 0.080 0.920 7 C -0.168 4.168 8 N -0.538 5.538 9 Si 0.780 3.220 10 H -0.203 1.203 11 H -0.211 1.211 12 H -0.196 1.196 13 N -0.294 5.294 14 C 0.170 3.830 15 C -0.193 4.193 16 C -0.004 4.004 17 C -0.186 4.186 18 N 0.556 4.444 19 O -0.366 6.366 20 O -0.420 6.420 21 C -0.054 4.054 22 C 0.400 3.600 23 O -0.366 6.366 24 O -0.294 6.294 25 C -0.135 4.135 26 Cl -0.002 7.002 27 H 0.066 0.934 28 H 0.068 0.932 29 H 0.083 0.917 30 H 0.051 0.949 31 H 0.101 0.899 32 H 0.077 0.923 33 H 0.243 0.757 34 H 0.193 0.807 35 H 0.205 0.795 36 H 0.298 0.702 Dipole moment (debyes) X Y Z Total from point charges -4.153 4.752 -3.586 7.259 hybrid contribution 1.365 0.137 0.165 1.382 sum -2.788 4.889 -3.422 6.587 Atomic orbital electron populations 1.22170 0.96295 1.01310 1.00907 1.21922 0.94470 0.98685 1.01848 1.18900 0.94314 0.89661 0.80365 0.93909 1.21408 0.91595 1.39533 1.06587 0.92003 1.25408 1.01955 0.94256 0.95183 1.69905 1.36571 1.37713 1.09639 0.85620 0.80721 0.77535 0.78149 1.20340 1.21134 1.19647 1.46096 1.11363 1.53501 1.18413 1.18027 0.87165 0.86776 0.91080 1.21338 0.92513 1.05303 1.00153 1.20949 0.96050 0.88446 0.94971 1.20451 0.84615 1.14883 0.98698 1.43553 1.02686 0.98441 0.99759 1.94484 1.48718 1.62938 1.30416 1.94589 1.81425 1.47028 1.18951 1.19507 0.92616 0.99549 0.93747 1.19759 0.74664 0.81136 0.84468 1.90874 1.38510 1.62347 1.44821 1.84550 1.73765 1.21090 1.49959 1.19896 0.92088 1.10133 0.91375 1.98403 1.60839 1.97332 1.43600 0.93361 0.93222 0.91678 0.94937 0.89945 0.92287 0.75722 0.80719 0.79500 0.70159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.40 8.22 71.98 0.59 -3.80 16 2 C -0.13 -4.80 5.45 30.60 0.17 -4.64 16 3 C 0.27 10.11 2.20 44.25 0.10 10.20 16 4 H 0.04 1.70 6.48 -2.39 -0.02 1.68 16 5 C -0.55 -24.20 8.73 25.60 0.22 -23.98 16 6 H 0.06 2.68 7.74 -2.91 -0.02 2.66 16 7 C 0.03 1.55 5.29 84.66 0.45 2.00 16 8 N -0.90 -42.49 11.29 21.45 0.24 -42.24 16 9 Si 0.95 37.15 29.54 68.60 2.03 39.18 16 10 H -0.28 -10.76 7.11 99.48 0.71 -10.05 16 11 H -0.29 -11.19 7.11 99.48 0.71 -10.48 16 12 H -0.27 -10.46 7.11 99.48 0.71 -9.76 16 13 N -0.68 -20.95 5.13 -322.49 -1.66 -22.60 16 14 C 0.29 7.78 5.48 38.17 0.21 7.99 16 15 C -0.17 -4.05 6.72 22.45 0.15 -3.90 16 16 C 0.02 0.35 9.53 22.21 0.21 0.57 16 17 C -0.10 -2.55 6.88 36.65 0.25 -2.30 16 18 N 0.04 1.33 4.45 -45.79 -0.20 1.12 16 19 O -0.14 -4.11 18.44 18.88 0.35 -3.76 16 20 O -0.22 -7.45 16.28 24.16 0.39 -7.06 16 21 C -0.05 -1.32 5.56 -20.10 -0.11 -1.43 16 22 C 0.56 16.69 4.26 70.31 0.30 16.99 16 23 O -0.48 -18.03 17.84 23.71 0.42 -17.61 16 24 O -0.48 -11.26 13.40 -53.62 -0.72 -11.97 16 25 C -0.10 -2.66 6.37 22.74 0.14 -2.52 16 26 Cl -0.03 -0.78 26.67 -2.72 -0.07 -0.85 16 27 H 0.05 1.35 5.39 -2.39 -0.01 1.33 16 28 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 29 H 0.06 1.74 6.35 -2.39 -0.02 1.72 16 30 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.08 3.54 5.95 -2.39 -0.01 3.53 16 32 H 0.27 12.23 8.31 -92.71 -0.77 11.46 16 33 H 0.41 12.30 7.21 -92.71 -0.67 11.63 16 34 H 0.18 4.22 3.99 -2.91 -0.01 4.21 16 35 H 0.19 3.05 7.60 -2.91 -0.02 3.03 16 36 H 0.44 5.14 8.96 -74.06 -0.66 4.48 16 Total: -1.00 -55.95 323.32 3.33 -52.62 By element: Atomic # 1 Polarization: 18.12 SS G_CDS: -0.13 Total: 17.99 kcal Atomic # 6 Polarization: -7.50 SS G_CDS: 2.68 Total: -4.81 kcal Atomic # 7 Polarization: -62.11 SS G_CDS: -1.62 Total: -63.72 kcal Atomic # 8 Polarization: -40.84 SS G_CDS: 0.45 Total: -40.40 kcal Atomic # 14 Polarization: 37.15 SS G_CDS: 2.03 Total: 39.18 kcal Atomic # 17 Polarization: -0.78 SS G_CDS: -0.07 Total: -0.85 kcal Total: -55.95 3.33 -52.62 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001595030524.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.559 kcal (2) G-P(sol) polarization free energy of solvation -55.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds