Wall clock time and date at job start Tue Mar 31 2020 15:35:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35752 * 116.99940 * 2 1 4 4 C 1.39179 * 120.37419 * 359.97438 * 3 2 1 5 5 C 1.38348 * 118.46587 * 179.77002 * 4 3 2 6 6 C 1.39504 * 119.15536 * 0.47228 * 5 4 3 7 7 C 1.47771 * 119.65900 * 179.79560 * 6 5 4 8 8 O 1.21597 * 119.99735 * 5.99082 * 7 6 5 9 9 N 1.34777 * 120.00053 * 185.99090 * 7 6 5 10 10 C 1.36820 * 119.99869 * 175.81691 * 9 7 6 11 11 H 1.08001 * 119.99849 * 142.74561 * 10 9 7 12 12 C 1.39071 * 120.00262 * 323.02267 * 10 9 7 13 13 N 1.31345 * 119.99806 * 341.28163 * 12 10 9 14 14 Si 1.86805 * 120.00135 * 161.27988 * 12 10 9 15 15 H 1.48495 * 109.46967 * 94.99131 * 14 12 10 16 16 H 1.48494 * 109.46961 * 214.99280 * 14 12 10 17 17 H 1.48499 * 109.47062 * 334.99045 * 14 12 10 18 18 C 1.46504 * 119.99926 * 355.82019 * 9 7 6 19 19 C 1.53003 * 109.46844 * 277.04274 * 18 9 7 20 20 C 1.50702 * 109.46939 * 180.02562 * 19 18 9 21 21 O 1.20827 * 119.99746 * 0.02562 * 20 19 18 22 22 O 1.34221 * 120.00106 * 180.02562 * 20 19 18 23 23 N 1.32908 * 120.68198 * 359.51493 * 6 5 4 24 24 C 1.31465 * 121.66067 * 0.25649 * 23 6 5 25 25 Cl 1.73601 * 119.60409 * 180.02562 * 24 23 6 26 26 H 1.09000 * 109.46829 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47746 * 299.99998 * 1 2 3 28 28 H 1.08998 * 109.47088 * 60.00283 * 1 2 3 29 29 H 1.07998 * 120.76905 * 0.02562 * 4 3 2 30 30 H 1.08002 * 120.42055 * 180.26220 * 5 4 3 31 31 H 0.97002 * 119.99808 * 185.03902 * 13 12 10 32 32 H 1.09001 * 109.47171 * 37.04455 * 18 9 7 33 33 H 1.09004 * 109.46796 * 157.04531 * 18 9 7 34 34 H 1.08998 * 109.46941 * 299.99781 * 19 18 9 35 35 H 1.08994 * 109.46853 * 60.00076 * 19 18 9 36 36 H 0.96700 * 117.00420 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2096 0.0000 4 6 1.2949 2.3817 -0.0005 5 6 1.9636 3.5928 0.0044 6 6 3.3587 3.5989 -0.0004 7 6 4.0843 4.8862 0.0002 8 8 3.4709 5.9298 0.1147 9 7 5.4260 4.9035 -0.1262 10 6 6.0897 6.0969 -0.2117 11 1 7.0519 6.2150 0.2644 12 6 5.5228 7.1596 -0.9069 13 7 4.5617 6.9388 -1.7744 14 14 6.1282 8.9012 -0.6068 15 1 7.1567 9.2491 -1.6198 16 1 4.9882 9.8467 -0.7137 17 1 6.7208 8.9920 0.7518 18 6 6.1738 3.6445 -0.1720 19 6 6.4167 3.1435 1.2531 20 6 7.1864 1.8487 1.2060 21 8 7.5080 1.3755 0.1418 22 8 7.5146 1.2212 2.3462 23 7 4.0418 2.4588 0.0002 24 6 3.4367 1.2917 0.0001 25 17 4.3818 -0.1644 0.0016 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 0.2155 2.3467 -0.0005 30 1 1.4127 4.5217 0.0084 31 1 4.2166 7.6686 -2.3122 32 1 5.6001 2.9011 -0.7257 33 1 7.1307 3.8081 -0.6677 34 1 6.9904 3.8868 1.8067 35 1 5.4598 2.9800 1.7488 36 1 8.0088 0.3939 2.2656 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001599479182.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:35:04 Heat of formation + Delta-G solvation = -92.762428 kcal Electronic energy + Delta-G solvation = -26478.220888 eV Core-core repulsion = 22376.839075 eV Total energy + Delta-G solvation = -4101.381812 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.070 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.62532 -39.76923 -38.74664 -37.38391 -36.27781 -35.78667 -34.59374 -32.49292 -31.85615 -30.33642 -29.96915 -27.66981 -25.37625 -24.23366 -23.26465 -22.78346 -20.71125 -19.87326 -18.22200 -17.72481 -17.61480 -16.75858 -16.40628 -15.98939 -15.66997 -15.54153 -15.01380 -14.66914 -14.39536 -14.17793 -14.00110 -13.57617 -13.24056 -13.06458 -12.73865 -12.57114 -12.15970 -11.61630 -11.60500 -11.55220 -11.33120 -11.16377 -11.12188 -10.95125 -10.94420 -10.66460 -10.52790 -10.26413 -10.10289 -9.55228 -9.12726 -8.88461 -8.25190 -8.10820 -7.19990 -6.25466 -3.91078 1.06096 1.25000 2.07059 2.70484 3.06638 3.25105 3.33705 3.36236 3.44113 3.56067 4.18403 4.56737 4.64767 4.73831 4.81856 4.98379 5.06741 5.16317 5.22525 5.30995 5.33828 5.61052 5.65361 5.74783 6.00311 6.04460 6.25792 6.28290 6.45777 6.64734 6.84842 7.07137 7.17685 7.46440 7.89016 8.09263 8.32163 8.87629 9.04607 9.49409 10.17976 10.81650 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.012371 B = 0.005419 C = 0.003970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2262.845032 B = 5166.121114 C = 7051.983772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.302 6.302 3 C 0.081 3.919 4 C -0.159 4.159 5 C -0.083 4.083 6 C 0.099 3.901 7 C 0.496 3.504 8 O -0.528 6.528 9 N -0.418 5.418 10 C -0.334 4.334 11 H 0.089 0.911 12 C 0.061 3.939 13 N -0.807 5.807 14 Si 0.920 3.080 15 H -0.281 1.281 16 H -0.282 1.282 17 H -0.269 1.269 18 C 0.109 3.891 19 C -0.114 4.114 20 C 0.486 3.514 21 O -0.510 6.510 22 O -0.525 6.525 23 N -0.422 5.422 24 C 0.141 3.859 25 Cl -0.028 7.028 26 H 0.101 0.899 27 H 0.056 0.944 28 H 0.057 0.943 29 H 0.146 0.854 30 H 0.153 0.847 31 H 0.268 0.732 32 H 0.111 0.889 33 H 0.069 0.931 34 H 0.097 0.903 35 H 0.099 0.901 36 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.198 -12.765 4.929 14.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.214 6.214 3 C 0.032 3.968 4 C -0.185 4.185 5 C -0.104 4.104 6 C -0.040 4.040 7 C 0.284 3.716 8 O -0.406 6.406 9 N -0.137 5.137 10 C -0.462 4.462 11 H 0.107 0.893 12 C -0.151 4.151 13 N -0.440 5.440 14 Si 0.746 3.254 15 H -0.208 1.208 16 H -0.208 1.208 17 H -0.194 1.194 18 C -0.015 4.015 19 C -0.153 4.153 20 C 0.328 3.672 21 O -0.397 6.397 22 O -0.337 6.337 23 N -0.138 5.138 24 C -0.026 4.026 25 Cl 0.000 7.000 26 H 0.119 0.881 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.164 0.836 30 H 0.171 0.829 31 H 0.078 0.922 32 H 0.128 0.872 33 H 0.087 0.913 34 H 0.115 0.885 35 H 0.117 0.883 36 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges -4.755 -12.145 4.630 13.840 hybrid contribution -0.488 0.074 -0.071 0.499 sum -5.243 -12.071 4.559 13.928 Atomic orbital electron populations 1.23105 0.78303 1.04092 1.01511 1.86108 1.21321 1.25562 1.88445 1.19635 0.91338 0.85676 1.00185 1.21579 1.00608 0.91191 1.05122 1.21996 0.94440 0.98683 0.95329 1.21989 0.91766 0.92001 0.98219 1.17042 0.82992 0.85352 0.86206 1.90629 1.66301 1.31262 1.52417 1.43218 1.04349 1.04774 1.61318 1.19293 1.04845 0.87917 1.34099 0.89317 1.25250 0.95522 1.00135 0.94219 1.69848 1.23417 1.33230 1.17552 0.86058 0.77941 0.82550 0.78819 1.20764 1.20773 1.19360 1.21889 0.98239 0.88440 0.92971 1.21731 1.00104 0.90604 1.02869 1.23627 0.76493 0.86240 0.80860 1.90680 1.51588 1.66276 1.31152 1.84583 1.70653 1.40589 1.37841 1.67876 1.37682 0.96552 1.11683 1.21121 0.85689 0.89888 1.05893 1.98387 1.73190 1.31678 1.96709 0.88056 0.92501 0.92476 0.83613 0.82906 0.92166 0.87167 0.91265 0.88500 0.88328 0.74274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 9.83 101.05 0.99 1.20 16 2 O -0.30 -3.90 9.96 -18.97 -0.19 -4.09 16 3 C 0.08 1.23 6.71 -38.81 -0.26 0.97 16 4 C -0.16 -2.24 9.12 -39.19 -0.36 -2.60 16 5 C -0.08 -1.47 9.62 -39.07 -0.38 -1.85 16 6 C 0.10 2.07 6.53 -83.03 -0.54 1.52 16 7 C 0.50 12.55 6.79 -12.36 -0.08 12.47 16 8 O -0.53 -14.96 13.62 5.28 0.07 -14.89 16 9 N -0.42 -10.45 2.57 -115.91 -0.30 -10.74 16 10 C -0.33 -8.87 9.28 -15.02 -0.14 -9.01 16 11 H 0.09 2.21 7.90 -52.49 -0.41 1.80 16 12 C 0.06 1.65 4.38 -17.45 -0.08 1.58 16 13 N -0.81 -23.11 11.19 55.50 0.62 -22.49 16 14 Si 0.92 20.99 29.60 -169.99 -5.03 15.96 16 15 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 16 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 17 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 18 C 0.11 2.33 4.25 -4.04 -0.02 2.31 16 19 C -0.11 -2.07 5.50 -27.88 -0.15 -2.22 16 20 C 0.49 8.08 8.33 36.01 0.30 8.38 16 21 O -0.51 -9.54 16.74 -18.75 -0.31 -9.86 16 22 O -0.53 -7.03 13.42 -39.23 -0.53 -7.55 16 23 N -0.42 -8.19 4.40 -6.84 -0.03 -8.22 16 24 C 0.14 2.44 7.29 -17.28 -0.13 2.31 16 25 Cl -0.03 -0.45 28.66 -51.86 -1.49 -1.93 16 26 H 0.10 0.60 8.14 -51.93 -0.42 0.17 16 27 H 0.06 0.40 7.69 -51.93 -0.40 0.00 16 28 H 0.06 0.42 7.69 -51.93 -0.40 0.02 16 29 H 0.15 1.49 6.43 -52.49 -0.34 1.16 16 30 H 0.15 2.67 7.64 -52.49 -0.40 2.27 16 31 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 32 H 0.11 2.44 5.08 -54.43 -0.28 2.16 16 33 H 0.07 1.50 7.94 -51.93 -0.41 1.09 16 34 H 0.10 1.67 8.14 -51.93 -0.42 1.25 16 35 H 0.10 1.82 6.89 -51.93 -0.36 1.46 16 36 H 0.40 3.53 9.10 45.56 0.41 3.95 16 LS Contribution 330.07 15.07 4.97 4.97 Total: -1.00 -33.45 330.07 -5.61 -39.06 By element: Atomic # 1 Polarization: 7.28 SS G_CDS: -2.56 Total: 4.71 kcal Atomic # 6 Polarization: 15.91 SS G_CDS: -0.84 Total: 15.07 kcal Atomic # 7 Polarization: -41.74 SS G_CDS: 0.29 Total: -41.45 kcal Atomic # 8 Polarization: -35.44 SS G_CDS: -0.96 Total: -36.39 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.03 Total: 15.96 kcal Atomic # 17 Polarization: -0.45 SS G_CDS: -1.49 Total: -1.93 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -33.45 -5.61 -39.06 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599479182.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.699 kcal (2) G-P(sol) polarization free energy of solvation -33.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds