Wall clock time and date at job start Tue Mar 31 2020 15:35:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35752 * 116.99940 * 2 1 4 4 C 1.39179 * 120.37419 * 359.97438 * 3 2 1 5 5 C 1.38348 * 118.46587 * 179.77002 * 4 3 2 6 6 C 1.39504 * 119.15536 * 0.47228 * 5 4 3 7 7 C 1.47771 * 119.65900 * 179.79560 * 6 5 4 8 8 O 1.21597 * 119.99735 * 5.99082 * 7 6 5 9 9 N 1.34777 * 120.00053 * 185.99090 * 7 6 5 10 10 C 1.36820 * 119.99869 * 175.81691 * 9 7 6 11 11 H 1.08001 * 119.99849 * 142.74561 * 10 9 7 12 12 C 1.39071 * 120.00262 * 323.02267 * 10 9 7 13 13 N 1.31345 * 119.99806 * 341.28163 * 12 10 9 14 14 Si 1.86805 * 120.00135 * 161.27988 * 12 10 9 15 15 H 1.48495 * 109.46967 * 94.99131 * 14 12 10 16 16 H 1.48494 * 109.46961 * 214.99280 * 14 12 10 17 17 H 1.48499 * 109.47062 * 334.99045 * 14 12 10 18 18 C 1.46504 * 119.99926 * 355.82019 * 9 7 6 19 19 C 1.53003 * 109.46844 * 277.04274 * 18 9 7 20 20 C 1.50702 * 109.46939 * 180.02562 * 19 18 9 21 21 O 1.20827 * 119.99746 * 0.02562 * 20 19 18 22 22 O 1.34221 * 120.00106 * 180.02562 * 20 19 18 23 23 N 1.32908 * 120.68198 * 359.51493 * 6 5 4 24 24 C 1.31465 * 121.66067 * 0.25649 * 23 6 5 25 25 Cl 1.73601 * 119.60409 * 180.02562 * 24 23 6 26 26 H 1.09000 * 109.46829 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47746 * 299.99998 * 1 2 3 28 28 H 1.08998 * 109.47088 * 60.00283 * 1 2 3 29 29 H 1.07998 * 120.76905 * 0.02562 * 4 3 2 30 30 H 1.08002 * 120.42055 * 180.26220 * 5 4 3 31 31 H 0.97002 * 119.99808 * 185.03902 * 13 12 10 32 32 H 1.09001 * 109.47171 * 37.04455 * 18 9 7 33 33 H 1.09004 * 109.46796 * 157.04531 * 18 9 7 34 34 H 1.08998 * 109.46941 * 299.99781 * 19 18 9 35 35 H 1.08994 * 109.46853 * 60.00076 * 19 18 9 36 36 H 0.96700 * 117.00420 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2096 0.0000 4 6 1.2949 2.3817 -0.0005 5 6 1.9636 3.5928 0.0044 6 6 3.3587 3.5989 -0.0004 7 6 4.0843 4.8862 0.0002 8 8 3.4709 5.9298 0.1147 9 7 5.4260 4.9035 -0.1262 10 6 6.0897 6.0969 -0.2117 11 1 7.0519 6.2150 0.2644 12 6 5.5228 7.1596 -0.9069 13 7 4.5617 6.9388 -1.7744 14 14 6.1282 8.9012 -0.6068 15 1 7.1567 9.2491 -1.6198 16 1 4.9882 9.8467 -0.7137 17 1 6.7208 8.9920 0.7518 18 6 6.1738 3.6445 -0.1720 19 6 6.4167 3.1435 1.2531 20 6 7.1864 1.8487 1.2060 21 8 7.5080 1.3755 0.1418 22 8 7.5146 1.2212 2.3462 23 7 4.0418 2.4588 0.0002 24 6 3.4367 1.2917 0.0001 25 17 4.3818 -0.1644 0.0016 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 0.2155 2.3467 -0.0005 30 1 1.4127 4.5217 0.0084 31 1 4.2166 7.6686 -2.3122 32 1 5.6001 2.9011 -0.7257 33 1 7.1307 3.8081 -0.6677 34 1 6.9904 3.8868 1.8067 35 1 5.4598 2.9800 1.7488 36 1 8.0088 0.3939 2.2656 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001599479182.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:35:03 Heat of formation + Delta-G solvation = -116.137458 kcal Electronic energy + Delta-G solvation = -26479.234505 eV Core-core repulsion = 22376.839075 eV Total energy + Delta-G solvation = -4102.395430 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.070 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.99203 -41.08978 -40.20713 -38.84954 -37.58334 -37.09489 -36.39088 -34.33091 -33.24918 -31.74258 -31.59233 -28.61584 -27.15412 -25.78009 -24.57726 -24.27174 -22.18627 -21.51048 -19.47182 -19.14576 -19.03165 -18.17290 -17.94698 -17.12164 -17.03000 -16.93970 -16.72677 -16.20559 -15.92678 -15.59354 -15.40181 -14.98131 -14.72095 -14.53394 -14.10944 -13.98759 -13.71708 -13.23005 -13.14408 -12.77248 -12.71130 -12.57213 -12.53385 -12.40065 -12.36475 -12.23576 -12.12703 -11.93938 -11.49726 -10.99726 -10.84021 -10.55281 -10.10766 -9.42786 -9.14288 -8.24307 -5.96304 -0.32002 -0.04938 0.75539 1.36218 1.42771 1.49465 1.58162 2.02365 2.05281 2.15206 2.40319 2.86746 3.07441 3.28535 3.37631 3.61121 3.82238 3.95929 4.09934 4.15789 4.25104 4.38491 4.43253 4.59988 4.72626 4.78871 4.81258 4.91846 5.00490 5.06315 5.42402 5.48085 5.71467 6.02406 6.12634 6.48896 6.93528 7.11386 7.15621 7.58290 8.27289 8.84552 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.012371 B = 0.005419 C = 0.003970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2262.845032 B = 5166.121114 C = 7051.983772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.009 3.991 2 O -0.307 6.307 3 C 0.109 3.891 4 C -0.140 4.140 5 C -0.080 4.080 6 C 0.062 3.938 7 C 0.495 3.505 8 O -0.569 6.569 9 N -0.436 5.436 10 C -0.362 4.362 11 H 0.094 0.906 12 C 0.014 3.986 13 N -0.853 5.853 14 Si 0.983 3.017 15 H -0.268 1.268 16 H -0.291 1.291 17 H -0.261 1.261 18 C 0.116 3.884 19 C -0.106 4.106 20 C 0.498 3.502 21 O -0.532 6.532 22 O -0.513 6.513 23 N -0.428 5.428 24 C 0.119 3.881 25 Cl -0.019 7.019 26 H 0.128 0.872 27 H 0.075 0.925 28 H 0.071 0.929 29 H 0.195 0.805 30 H 0.150 0.850 31 H 0.264 0.736 32 H 0.105 0.895 33 H 0.056 0.944 34 H 0.103 0.897 35 H 0.096 0.904 36 H 0.424 0.576 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.573 -15.010 5.970 17.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 O -0.219 6.219 3 C 0.058 3.942 4 C -0.166 4.166 5 C -0.101 4.101 6 C -0.075 4.075 7 C 0.284 3.716 8 O -0.450 6.450 9 N -0.155 5.155 10 C -0.489 4.489 11 H 0.112 0.888 12 C -0.194 4.194 13 N -0.488 5.488 14 Si 0.807 3.193 15 H -0.193 1.193 16 H -0.217 1.217 17 H -0.185 1.185 18 C -0.008 4.008 19 C -0.145 4.145 20 C 0.341 3.659 21 O -0.422 6.422 22 O -0.327 6.327 23 N -0.143 5.143 24 C -0.049 4.049 25 Cl 0.010 6.990 26 H 0.146 0.854 27 H 0.093 0.907 28 H 0.090 0.910 29 H 0.212 0.788 30 H 0.168 0.832 31 H 0.073 0.927 32 H 0.122 0.878 33 H 0.075 0.925 34 H 0.121 0.879 35 H 0.114 0.886 36 H 0.285 0.715 Dipole moment (debyes) X Y Z Total from point charges -6.098 -14.445 5.694 16.681 hybrid contribution -0.242 0.387 -0.315 0.555 sum -6.340 -14.058 5.379 16.332 Atomic orbital electron populations 1.23587 0.75220 1.06550 1.03087 1.86139 1.24344 1.24067 1.87333 1.19668 0.90721 0.86948 0.96866 1.21938 1.02665 0.89069 1.02913 1.22043 0.93135 1.00207 0.94758 1.21387 0.92767 0.90830 1.02522 1.17668 0.83083 0.86601 0.84276 1.90570 1.67263 1.33400 1.53804 1.43381 1.04768 1.05390 1.61911 1.19601 1.05498 0.89143 1.34697 0.88802 1.26122 0.95673 1.03822 0.93737 1.69966 1.25752 1.33833 1.19281 0.85100 0.77296 0.77686 0.79249 1.19301 1.21665 1.18479 1.21793 0.96920 0.87091 0.94948 1.21475 1.00502 0.91901 1.00628 1.23108 0.75968 0.85690 0.81141 1.90681 1.52583 1.66785 1.32145 1.84502 1.70583 1.41796 1.35807 1.67607 1.38459 0.96861 1.11404 1.21346 0.87092 0.89529 1.06890 1.98385 1.73265 1.30661 1.96717 0.85432 0.90666 0.91009 0.78837 0.83221 0.92666 0.87800 0.92534 0.87910 0.88575 0.71496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.10 9.83 113.37 1.11 1.22 16 2 O -0.31 -6.64 9.96 -90.78 -0.90 -7.55 16 3 C 0.11 2.94 6.71 22.77 0.15 3.09 16 4 C -0.14 -3.48 9.12 22.52 0.21 -3.27 16 5 C -0.08 -2.76 9.62 22.60 0.22 -2.55 16 6 C 0.06 2.65 6.53 41.81 0.27 2.93 16 7 C 0.49 26.08 6.79 86.76 0.59 26.67 16 8 O -0.57 -33.79 13.62 -4.02 -0.05 -33.85 16 9 N -0.44 -22.74 2.57 -638.89 -1.64 -24.38 16 10 C -0.36 -20.02 9.28 84.12 0.78 -19.24 16 11 H 0.09 4.86 7.90 -2.91 -0.02 4.84 16 12 C 0.01 0.79 4.38 84.97 0.37 1.16 16 13 N -0.85 -51.24 11.19 21.68 0.24 -51.00 16 14 Si 0.98 44.53 29.60 68.60 2.03 46.56 16 15 H -0.27 -11.38 7.11 99.48 0.71 -10.68 16 16 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 17 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16 18 C 0.12 5.15 4.25 86.38 0.37 5.51 16 19 C -0.11 -3.88 5.50 29.85 0.16 -3.71 16 20 C 0.50 16.13 8.33 71.24 0.59 16.73 16 21 O -0.53 -19.63 16.74 21.96 0.37 -19.26 16 22 O -0.51 -12.61 13.42 -51.33 -0.69 -13.30 16 23 N -0.43 -16.56 4.40 -175.54 -0.77 -17.33 16 24 C 0.12 3.94 7.29 85.02 0.62 4.56 16 25 Cl -0.02 -0.56 28.66 -2.72 -0.08 -0.64 16 26 H 0.13 0.82 8.14 -2.39 -0.02 0.80 16 27 H 0.07 0.62 7.69 -2.39 -0.02 0.61 16 28 H 0.07 0.65 7.69 -2.39 -0.02 0.63 16 29 H 0.19 2.90 6.43 -2.91 -0.02 2.88 16 30 H 0.15 5.23 7.64 -2.91 -0.02 5.21 16 31 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 32 H 0.10 4.75 5.08 -7.33 -0.04 4.71 16 33 H 0.06 2.57 7.94 -2.39 -0.02 2.55 16 34 H 0.10 3.59 8.14 -2.39 -0.02 3.57 16 35 H 0.10 3.57 6.89 -2.39 -0.02 3.55 16 36 H 0.42 6.30 9.10 -74.06 -0.67 5.62 16 Total: -1.00 -76.71 330.07 4.41 -72.29 By element: Atomic # 1 Polarization: 14.89 SS G_CDS: 0.46 Total: 15.36 kcal Atomic # 6 Polarization: 27.65 SS G_CDS: 5.45 Total: 33.10 kcal Atomic # 7 Polarization: -90.54 SS G_CDS: -2.17 Total: -92.71 kcal Atomic # 8 Polarization: -72.68 SS G_CDS: -1.28 Total: -73.96 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.56 kcal Atomic # 17 Polarization: -0.56 SS G_CDS: -0.08 Total: -0.64 kcal Total: -76.71 4.41 -72.29 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599479182.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.845 kcal (2) G-P(sol) polarization free energy of solvation -76.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds