Wall clock time and date at job start Tue Mar 31 2020 15:06:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86803 * 119.99984 * 2 1 4 4 H 1.48500 * 109.46833 * 240.00079 * 3 2 1 5 5 H 1.48499 * 109.47336 * 0.02562 * 3 2 1 6 6 H 1.48494 * 109.46930 * 120.00380 * 3 2 1 7 7 C 1.38810 * 120.00132 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00207 * 197.80722 * 7 2 1 9 9 N 1.36941 * 119.99557 * 17.80564 * 7 2 1 10 10 C 1.46502 * 119.99897 * 221.42532 * 9 7 2 11 11 C 1.53002 * 109.47442 * 270.00532 * 10 9 7 12 12 C 1.50696 * 109.47122 * 179.97438 * 11 10 9 13 13 O 1.20830 * 120.00270 * 0.02562 * 12 11 10 14 14 O 1.34225 * 120.00370 * 179.97438 * 12 11 10 15 15 C 1.46496 * 120.00183 * 41.43466 * 9 7 2 16 16 C 1.50696 * 109.47627 * 95.78357 * 15 9 7 17 17 C 1.38265 * 119.99189 * 276.58540 * 16 15 9 18 18 C 1.38217 * 120.02624 * 180.02562 * 17 16 15 19 19 C 1.38238 * 120.01519 * 359.71129 * 18 17 16 20 20 N 1.48023 * 120.01138 * 180.30828 * 19 18 17 21 21 O 1.21800 * 119.99696 * 0.22839 * 20 19 18 22 22 O 1.21802 * 119.99941 * 180.23775 * 20 19 18 23 23 C 1.38337 * 119.98240 * 0.53781 * 19 18 17 24 24 Cl 1.73604 * 120.01029 * 179.73901 * 23 19 18 25 25 C 1.38195 * 119.99463 * 96.55402 * 16 15 9 26 26 H 0.96998 * 120.00186 * 359.97438 * 1 2 3 27 27 H 1.09003 * 109.46887 * 30.00507 * 10 9 7 28 28 H 1.09005 * 109.47075 * 150.00003 * 10 9 7 29 29 H 1.08996 * 109.46743 * 299.99673 * 11 10 9 30 30 H 1.09001 * 109.47030 * 60.00009 * 11 10 9 31 31 H 0.96698 * 117.00719 * 179.97438 * 14 12 11 32 32 H 1.09002 * 109.47185 * 335.78147 * 15 9 7 33 33 H 1.09003 * 109.47031 * 215.78279 * 15 9 7 34 34 H 1.07997 * 119.98892 * 0.02562 * 17 16 15 35 35 H 1.08001 * 119.99843 * 180.02562 * 18 17 16 36 36 H 1.07998 * 120.00551 * 0.03018 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1039 1.6963 1.2124 7 6 2.0102 -1.2021 -0.0005 8 1 3.0514 -1.2247 0.2855 9 7 1.3747 -2.3595 -0.3637 10 6 1.6165 -3.5944 0.3864 11 6 2.7940 -4.3472 -0.2363 12 6 3.0431 -5.6172 0.5357 13 8 2.3497 -5.8923 1.4863 14 8 4.0346 -6.4433 0.1669 15 6 0.4531 -2.3627 -1.5025 16 6 1.1835 -2.8199 -2.7387 17 6 1.9290 -1.9174 -3.4745 18 6 2.5988 -2.3358 -4.6088 19 6 2.5287 -3.6584 -5.0050 20 7 3.2517 -4.1079 -6.2159 21 8 3.9118 -3.3132 -6.8611 22 8 3.1862 -5.2723 -6.5672 23 6 1.7788 -4.5607 -4.2721 24 17 1.6848 -6.2203 -4.7727 25 6 1.1087 -4.1413 -3.1364 26 1 -0.4850 0.8400 0.0004 27 1 1.8488 -3.3502 1.4231 28 1 0.7253 -4.2210 0.3517 29 1 2.5616 -4.5914 -1.2729 30 1 3.6852 -3.7205 -0.2016 31 1 4.1562 -7.2456 0.6929 32 1 0.0668 -1.3557 -1.6602 33 1 -0.3749 -3.0415 -1.2978 34 1 1.9879 -0.8850 -3.1629 35 1 3.1813 -1.6305 -5.1830 36 1 0.5265 -4.8462 -2.5615 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601073030.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:06:50 Heat of formation + Delta-G solvation = -67.624277 kcal Electronic energy + Delta-G solvation = -25884.315243 eV Core-core repulsion = 21784.023503 eV Total energy + Delta-G solvation = -4100.291740 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.070 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.22641 -41.24640 -40.67499 -38.11554 -37.70798 -37.42679 -37.01265 -34.07603 -33.63198 -32.20880 -31.37904 -28.81412 -26.80596 -25.90530 -24.20516 -23.65853 -22.46116 -21.60225 -20.41251 -19.73494 -19.14336 -18.77866 -18.62424 -17.73897 -17.07999 -16.95469 -16.84628 -16.53007 -15.77320 -15.61904 -15.31240 -15.11110 -14.69292 -14.42585 -14.15402 -13.69877 -13.29812 -13.15367 -12.97606 -12.83351 -12.68030 -12.64618 -12.52861 -12.46794 -12.45945 -12.22320 -12.15743 -11.97735 -11.80735 -11.60251 -11.44979 -10.60861 -10.37732 -10.11728 -8.68078 -7.95980 -5.59200 -1.25767 -0.16402 0.27245 0.28733 0.77024 1.22904 1.49966 1.55046 1.58667 2.10861 2.23153 2.50836 3.18158 3.21562 3.54927 3.71713 3.82735 3.90968 4.03267 4.08915 4.15598 4.39901 4.53597 4.56446 4.72692 4.76005 4.86467 4.97983 5.16220 5.24346 5.36827 5.41901 5.54434 5.62489 5.68285 6.40925 6.55357 7.02151 7.07446 7.66301 8.23015 9.04175 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.009693 B = 0.005299 C = 0.003885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2887.898747 B = 5283.037955 C = 7204.875030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C -0.013 4.013 3 Si 0.949 3.051 4 H -0.268 1.268 5 H -0.295 1.295 6 H -0.282 1.282 7 C -0.274 4.274 8 H 0.060 0.940 9 N -0.576 5.576 10 C 0.162 3.838 11 C -0.129 4.129 12 C 0.490 3.510 13 O -0.548 6.548 14 O -0.515 6.515 15 C 0.176 3.824 16 C -0.012 4.012 17 C -0.098 4.098 18 C -0.035 4.035 19 C -0.073 4.073 20 N 0.036 4.964 21 O -0.188 6.188 22 O -0.162 6.162 23 C 0.016 3.984 24 Cl -0.017 7.017 25 C -0.112 4.112 26 H 0.258 0.742 27 H 0.044 0.956 28 H 0.052 0.948 29 H 0.103 0.897 30 H 0.101 0.899 31 H 0.425 0.575 32 H 0.087 0.913 33 H 0.056 0.944 34 H 0.149 0.851 35 H 0.171 0.829 36 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.296 -8.003 -6.088 10.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.213 4.213 3 Si 0.777 3.223 4 H -0.193 1.193 5 H -0.221 1.221 6 H -0.208 1.208 7 C -0.404 4.404 8 H 0.078 0.922 9 N -0.295 5.295 10 C 0.036 3.964 11 C -0.169 4.169 12 C 0.334 3.666 13 O -0.439 6.439 14 O -0.329 6.329 15 C 0.050 3.950 16 C -0.017 4.017 17 C -0.117 4.117 18 C -0.054 4.054 19 C -0.158 4.158 20 N 0.550 4.450 21 O -0.397 6.397 22 O -0.378 6.378 23 C -0.013 4.013 24 Cl 0.013 6.987 25 C -0.132 4.132 26 H 0.067 0.933 27 H 0.063 0.937 28 H 0.070 0.930 29 H 0.121 0.879 30 H 0.119 0.881 31 H 0.286 0.714 32 H 0.105 0.895 33 H 0.074 0.926 34 H 0.167 0.833 35 H 0.188 0.812 36 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 2.577 -7.488 -5.485 9.633 hybrid contribution 0.647 0.157 0.126 0.677 sum 3.224 -7.331 -5.359 9.636 Atomic orbital electron populations 1.70064 1.06694 1.26910 1.50877 1.25848 0.95532 1.01240 0.98660 0.85650 0.78102 0.79797 0.78740 1.19333 1.22141 1.20797 1.19144 0.93073 0.85473 1.42720 0.92213 1.43773 1.52067 1.05146 1.28472 1.20668 0.94387 0.87096 0.94299 1.22112 1.03409 0.90644 1.00701 1.23671 0.76079 0.84972 0.81871 1.90697 1.48359 1.75259 1.29585 1.84544 1.51297 1.36781 1.60239 1.20049 0.90385 1.02414 0.82116 1.21647 0.93329 0.92169 0.94539 1.21287 0.95892 1.01863 0.92683 1.21182 0.96160 0.92045 0.96017 1.20863 1.06982 0.96354 0.91592 1.43624 0.99200 1.00489 1.01673 1.94501 1.39967 1.51119 1.54096 1.94569 1.67660 1.02260 1.73319 1.20801 0.97451 0.87386 0.95670 1.98439 1.96603 1.13443 1.90246 1.21197 1.00524 0.96862 0.94574 0.93255 0.93747 0.92994 0.87880 0.88066 0.71373 0.89474 0.92574 0.83286 0.81180 0.81790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -44.58 11.62 21.65 0.25 -44.33 16 2 C -0.01 -0.59 4.95 84.86 0.42 -0.17 16 3 Si 0.95 37.90 29.59 68.60 2.03 39.93 16 4 H -0.27 -10.18 7.11 99.48 0.71 -9.47 16 5 H -0.30 -12.11 7.11 99.48 0.71 -11.41 16 6 H -0.28 -11.40 7.11 99.48 0.71 -10.69 16 7 C -0.27 -12.25 9.44 84.03 0.79 -11.46 16 8 H 0.06 2.69 7.89 -2.91 -0.02 2.67 16 9 N -0.58 -22.74 2.39 -706.33 -1.69 -24.43 16 10 C 0.16 5.75 4.99 86.38 0.43 6.18 16 11 C -0.13 -3.78 6.00 29.85 0.18 -3.60 16 12 C 0.49 13.76 8.33 71.23 0.59 14.36 16 13 O -0.55 -18.53 16.74 21.95 0.37 -18.16 16 14 O -0.52 -11.15 13.42 -51.37 -0.69 -11.84 16 15 C 0.18 6.27 5.37 85.63 0.46 6.73 16 16 C -0.01 -0.36 4.94 -19.87 -0.10 -0.46 16 17 C -0.10 -2.75 9.73 22.27 0.22 -2.53 16 18 C -0.03 -0.91 9.55 22.26 0.21 -0.69 16 19 C -0.07 -2.06 6.86 36.40 0.25 -1.81 16 20 N 0.04 1.11 4.45 -46.40 -0.21 0.91 16 21 O -0.19 -5.95 18.45 18.89 0.35 -5.60 16 22 O -0.16 -5.16 16.02 18.88 0.30 -4.85 16 23 C 0.02 0.42 6.32 22.33 0.14 0.56 16 24 Cl -0.02 -0.43 25.94 -2.72 -0.07 -0.50 16 25 C -0.11 -2.87 7.55 22.29 0.17 -2.70 16 26 H 0.26 12.49 8.31 -92.71 -0.77 11.72 16 27 H 0.04 1.76 8.00 -2.39 -0.02 1.74 16 28 H 0.05 1.80 7.91 -2.38 -0.02 1.78 16 29 H 0.10 2.84 5.61 -2.39 -0.01 2.83 16 30 H 0.10 3.03 8.14 -2.39 -0.02 3.01 16 31 H 0.42 5.21 9.10 -74.06 -0.67 4.54 16 32 H 0.09 3.61 5.76 -2.39 -0.01 3.60 16 33 H 0.06 1.89 7.87 -2.39 -0.02 1.87 16 34 H 0.15 4.36 8.06 -2.91 -0.02 4.34 16 35 H 0.17 3.81 7.61 -2.91 -0.02 3.79 16 36 H 0.16 3.66 8.06 -2.91 -0.02 3.63 16 Total: -1.00 -55.43 336.31 4.89 -50.53 By element: Atomic # 1 Polarization: 13.46 SS G_CDS: 0.48 Total: 13.94 kcal Atomic # 6 Polarization: 0.62 SS G_CDS: 3.77 Total: 4.39 kcal Atomic # 7 Polarization: -66.20 SS G_CDS: -1.64 Total: -67.85 kcal Atomic # 8 Polarization: -40.79 SS G_CDS: 0.33 Total: -40.46 kcal Atomic # 14 Polarization: 37.90 SS G_CDS: 2.03 Total: 39.93 kcal Atomic # 17 Polarization: -0.43 SS G_CDS: -0.07 Total: -0.50 kcal Total: -55.43 4.89 -50.53 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601073030.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.090 kcal (2) G-P(sol) polarization free energy of solvation -55.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds