Wall clock time and date at job start Tue Mar 31 2020 15:53:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31496 * 1 3 3 Si 1.86806 * 119.99957 * 2 1 4 4 H 1.48497 * 109.47207 * 270.00416 * 3 2 1 5 5 H 1.48501 * 109.46727 * 30.00435 * 3 2 1 6 6 H 1.48502 * 109.46801 * 150.00142 * 3 2 1 7 7 C 1.38738 * 119.99870 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00309 * 359.97438 * 7 2 1 9 9 O 1.34783 * 119.99559 * 179.97438 * 7 2 1 10 10 C 1.35568 * 116.99536 * 185.05857 * 9 7 2 11 11 C 1.39144 * 119.92949 * 354.44856 * 10 9 7 12 12 C 1.37648 * 120.07940 * 180.02562 * 11 10 9 13 13 C 1.39778 * 119.92379 * 359.97381 * 12 11 10 14 14 C 1.47719 * 120.07746 * 180.02562 * 13 12 11 15 15 O 1.21861 * 119.99904 * 0.02562 * 14 13 12 16 16 C 1.41390 * 120.00122 * 179.97438 * 14 13 12 17 17 C 1.35814 * 119.99698 * 179.97438 * 16 14 13 18 18 C 1.41570 * 119.99667 * 179.97438 * 17 16 14 19 19 C 1.36598 * 125.68338 * 180.02562 * 18 17 16 20 20 C 1.41673 * 106.58361 * 179.97438 * 19 18 17 21 21 C 1.47370 * 126.76291 * 179.97438 * 20 19 18 22 22 O 1.21517 * 119.99576 * 359.97185 * 21 20 19 23 23 O 1.34748 * 120.00372 * 179.97438 * 21 20 19 24 24 C 1.37978 * 106.47519 * 0.02562 * 20 19 18 25 25 O 1.33574 * 108.41055 * 359.97438 * 24 20 19 26 26 C 1.39779 * 119.84980 * 0.27986 * 13 12 11 27 27 C 1.37649 * 119.92136 * 359.48839 * 26 13 12 28 28 H 0.96998 * 120.00029 * 359.97438 * 1 2 3 29 29 H 1.07999 * 119.96071 * 359.97438 * 11 10 9 30 30 H 1.08008 * 120.04204 * 179.97438 * 12 11 10 31 31 H 1.07992 * 120.00129 * 0.02562 * 16 14 13 32 32 H 1.07992 * 120.00173 * 0.02562 * 17 16 14 33 33 H 1.07995 * 126.70671 * 359.94887 * 19 18 17 34 34 H 0.96696 * 117.00128 * 180.02562 * 23 21 20 35 35 H 1.08004 * 125.79038 * 179.73563 * 24 20 19 36 36 H 1.08006 * 120.04113 * 179.70066 * 26 13 12 37 37 H 1.08005 * 119.96122 * 180.21315 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4964 2.0465 -1.4000 5 1 1.4464 2.6526 0.7001 6 1 3.5465 1.4401 0.7000 7 6 2.0086 -1.2015 -0.0005 8 1 1.4687 -2.1368 -0.0005 9 8 3.3565 -1.2015 -0.0011 10 6 3.9718 -2.4047 -0.1081 11 6 3.2176 -3.5739 -0.0944 12 6 3.8393 -4.7972 -0.2024 13 6 5.2299 -4.8641 -0.3263 14 6 5.9006 -6.1751 -0.4429 15 8 5.2413 -7.1999 -0.4316 16 6 7.3073 -6.2409 -0.5688 17 6 7.9239 -7.4463 -0.6755 18 6 9.3324 -7.5122 -0.8021 19 6 10.0694 -8.6565 -0.9172 20 6 11.4245 -8.2561 -1.0192 21 6 12.5966 -9.1381 -1.1606 22 8 12.4486 -10.3436 -1.1993 23 8 13.8324 -8.6080 -1.2470 24 6 11.4309 -6.8776 -0.9588 25 8 10.1703 -6.4552 -0.8293 26 6 5.9851 -3.6879 -0.3344 27 6 5.3565 -2.4677 -0.2308 28 1 -0.4850 0.8400 0.0004 29 1 2.1432 -3.5215 0.0018 30 1 3.2532 -5.7044 -0.1913 31 1 7.8916 -5.3327 -0.5793 32 1 7.3396 -8.3545 -0.6646 33 1 9.6927 -9.6685 -0.9279 34 1 14.5700 -9.2264 -1.3391 35 1 12.3068 -6.2474 -1.0042 36 1 7.0602 -3.7362 -0.4251 37 1 5.9391 -1.5583 -0.2404 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601073930.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:53:41 Heat of formation + Delta-G solvation = -92.207120 kcal Electronic energy + Delta-G solvation = -24786.710216 eV Core-core repulsion = 20655.492583 eV Total energy + Delta-G solvation = -4131.217634 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.087 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.28436 -40.34459 -39.81586 -38.84957 -36.55884 -36.43864 -34.53071 -33.73195 -32.65295 -30.77037 -30.25951 -29.10654 -25.84985 -25.20143 -24.79521 -22.23008 -22.08613 -21.70739 -20.59761 -19.13239 -18.25898 -18.22884 -17.90107 -17.53967 -16.90395 -16.43337 -16.27344 -15.85561 -15.47809 -14.84473 -14.73235 -14.33441 -14.01502 -14.01253 -13.89768 -13.77496 -13.33988 -13.09399 -13.00501 -12.57058 -12.46847 -12.12072 -12.11174 -11.82501 -11.48205 -11.23677 -11.08247 -10.90834 -10.84300 -10.46611 -10.30926 -9.65636 -9.48042 -9.08019 -8.49613 -8.47640 -7.58901 -6.64277 -4.28448 -0.00389 0.68933 1.44189 2.02549 2.19223 2.19363 2.55188 2.60771 3.08782 3.13165 3.26066 3.39186 4.02293 4.05499 4.11067 4.35463 4.41892 4.57430 4.81661 4.87158 4.91110 4.96591 5.16372 5.31988 5.44860 5.48034 5.51293 5.63918 5.81999 5.93975 5.94575 6.01130 6.20192 6.30998 6.42146 6.60971 6.80776 6.95270 7.11472 7.37752 7.38823 7.59837 7.79833 7.89780 8.68385 9.27663 10.41611 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.030341 B = 0.001847 C = 0.001743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 922.619238 B =15152.688242 C =16060.273058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.863 5.863 2 C 0.067 3.933 3 Si 0.907 3.093 4 H -0.271 1.271 5 H -0.279 1.279 6 H -0.258 1.258 7 C -0.392 4.392 8 H 0.112 0.888 9 O -0.198 6.198 10 C 0.182 3.818 11 C -0.237 4.237 12 C -0.009 4.009 13 C -0.263 4.263 14 C 0.425 3.575 15 O -0.484 6.484 16 C -0.192 4.192 17 C -0.020 4.020 18 C 0.007 3.993 19 C -0.118 4.118 20 C -0.230 4.230 21 C 0.557 3.443 22 O -0.510 6.510 23 O -0.515 6.515 24 C 0.066 3.934 25 O -0.150 6.150 26 C -0.030 4.030 27 C -0.205 4.205 28 H 0.284 0.716 29 H 0.139 0.861 30 H 0.122 0.878 31 H 0.136 0.864 32 H 0.162 0.838 33 H 0.169 0.831 34 H 0.418 0.582 35 H 0.226 0.774 36 H 0.122 0.878 37 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.035 -11.771 -2.008 26.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.498 5.498 2 C -0.139 4.139 3 Si 0.732 3.268 4 H -0.196 1.196 5 H -0.205 1.205 6 H -0.182 1.182 7 C -0.467 4.467 8 H 0.129 0.871 9 O -0.100 6.100 10 C 0.127 3.873 11 C -0.256 4.256 12 C -0.028 4.028 13 C -0.265 4.265 14 C 0.312 3.688 15 O -0.367 6.367 16 C -0.211 4.211 17 C -0.038 4.038 18 C -0.041 4.041 19 C -0.136 4.136 20 C -0.233 4.233 21 C 0.401 3.599 22 O -0.400 6.400 23 O -0.327 6.327 24 C -0.007 4.007 25 O -0.043 6.043 26 C -0.049 4.049 27 C -0.224 4.224 28 H 0.094 0.906 29 H 0.156 0.844 30 H 0.140 0.860 31 H 0.153 0.847 32 H 0.180 0.820 33 H 0.187 0.813 34 H 0.277 0.723 35 H 0.242 0.758 36 H 0.139 0.861 37 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 23.044 -11.632 -1.918 25.884 hybrid contribution 0.794 0.281 -0.081 0.846 sum 23.838 -11.351 -1.999 26.478 Atomic orbital electron populations 1.69609 1.05736 1.29096 1.45391 1.24562 0.95095 0.99151 0.95094 0.86151 0.80389 0.81017 0.79241 1.19575 1.20457 1.18154 1.20916 0.76558 0.97026 1.52214 0.87057 1.83500 1.23081 1.26284 1.77168 1.19398 0.91803 0.85318 0.90803 1.21245 1.01460 0.91568 1.11360 1.20968 0.93106 0.97216 0.91471 1.19771 0.94525 0.93419 1.18759 1.18951 0.88205 0.88726 0.72942 1.90631 1.68590 1.37121 1.40336 1.22888 0.97336 0.98630 1.02197 1.20838 0.87669 1.00377 0.94949 1.19520 0.91255 0.83910 1.09379 1.21977 0.90321 0.99871 1.01475 1.19591 0.92650 0.93067 1.17950 1.19698 0.82123 0.85985 0.72110 1.90928 1.86490 1.15918 1.46627 1.84526 1.17055 1.45718 1.85436 1.25283 0.85628 0.94117 0.95693 1.84054 1.16210 1.35630 1.68454 1.20852 0.98461 0.91026 0.94531 1.20153 0.91810 0.98031 1.12420 0.90558 0.84371 0.85993 0.84658 0.82026 0.81346 0.72296 0.75758 0.86061 0.85901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -23.60 13.96 55.48 0.77 -22.82 16 2 C 0.07 1.77 5.50 -17.51 -0.10 1.67 16 3 Si 0.91 20.30 28.62 -169.99 -4.86 15.43 16 4 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 5 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 6 H -0.26 -5.76 7.11 56.52 0.40 -5.36 16 7 C -0.39 -10.42 9.94 30.92 0.31 -10.11 16 8 H 0.11 3.02 5.42 -52.49 -0.28 2.74 16 9 O -0.20 -4.88 8.57 0.74 0.01 -4.88 16 10 C 0.18 3.94 6.66 -38.91 -0.26 3.68 16 11 C -0.24 -4.93 9.15 -39.46 -0.36 -5.29 16 12 C -0.01 -0.17 9.58 -39.22 -0.38 -0.54 16 13 C -0.26 -4.45 5.88 -104.87 -0.62 -5.06 16 14 C 0.43 6.51 6.89 -34.51 -0.24 6.28 16 15 O -0.48 -8.48 16.11 5.04 0.08 -8.40 16 16 C -0.19 -2.26 8.94 -39.25 -0.35 -2.61 16 17 C -0.02 -0.20 9.38 -39.18 -0.37 -0.57 16 18 C 0.01 0.07 6.77 -38.90 -0.26 -0.20 16 19 C -0.12 -1.02 10.64 -38.86 -0.41 -1.44 16 20 C -0.23 -1.85 6.16 -104.97 -0.65 -2.50 16 21 C 0.56 4.58 8.33 34.45 0.29 4.86 16 22 O -0.51 -5.87 17.72 -19.28 -0.34 -6.21 16 23 O -0.51 -2.44 13.27 -40.62 -0.54 -2.98 16 24 C 0.07 0.40 11.98 30.64 0.37 0.77 16 25 O -0.15 -1.25 10.10 5.92 0.06 -1.19 16 26 C -0.03 -0.47 9.42 -39.22 -0.37 -0.84 16 27 C -0.20 -3.70 9.97 -39.46 -0.39 -4.10 16 28 H 0.28 7.13 8.31 -40.82 -0.34 6.80 16 29 H 0.14 2.99 5.62 -52.49 -0.29 2.69 16 30 H 0.12 2.15 7.64 -52.48 -0.40 1.75 16 31 H 0.14 1.36 5.85 -52.49 -0.31 1.05 16 32 H 0.16 1.57 7.46 -52.49 -0.39 1.18 16 33 H 0.17 1.30 8.06 -52.49 -0.42 0.88 16 34 H 0.42 0.23 9.11 45.56 0.42 0.65 16 35 H 0.23 0.47 8.06 -52.48 -0.42 0.04 16 36 H 0.12 1.43 6.19 -52.48 -0.32 1.10 16 37 H 0.12 2.00 8.06 -52.48 -0.42 1.58 16 LS Contribution 344.65 15.07 5.19 5.19 Total: -1.00 -32.51 344.65 -5.41 -37.92 By element: Atomic # 1 Polarization: 5.92 SS G_CDS: -1.99 Total: 3.93 kcal Atomic # 6 Polarization: -12.21 SS G_CDS: -3.79 Total: -16.00 kcal Atomic # 7 Polarization: -23.60 SS G_CDS: 0.77 Total: -22.82 kcal Atomic # 8 Polarization: -22.92 SS G_CDS: -0.73 Total: -23.65 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -4.86 Total: 15.43 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -32.51 -5.41 -37.92 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601073930.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.287 kcal (2) G-P(sol) polarization free energy of solvation -32.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds