Wall clock time and date at job start Tue Mar 31 2020 15:53:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31496 * 1 3 3 Si 1.86806 * 119.99957 * 2 1 4 4 H 1.48497 * 109.47207 * 270.00416 * 3 2 1 5 5 H 1.48501 * 109.46727 * 30.00435 * 3 2 1 6 6 H 1.48502 * 109.46801 * 150.00142 * 3 2 1 7 7 C 1.38738 * 119.99870 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00309 * 359.97438 * 7 2 1 9 9 O 1.34783 * 119.99559 * 179.97438 * 7 2 1 10 10 C 1.35568 * 116.99536 * 185.05857 * 9 7 2 11 11 C 1.39144 * 119.92949 * 354.44856 * 10 9 7 12 12 C 1.37648 * 120.07940 * 180.02562 * 11 10 9 13 13 C 1.39778 * 119.92379 * 359.97381 * 12 11 10 14 14 C 1.47719 * 120.07746 * 180.02562 * 13 12 11 15 15 O 1.21861 * 119.99904 * 0.02562 * 14 13 12 16 16 C 1.41390 * 120.00122 * 179.97438 * 14 13 12 17 17 C 1.35814 * 119.99698 * 179.97438 * 16 14 13 18 18 C 1.41570 * 119.99667 * 179.97438 * 17 16 14 19 19 C 1.36598 * 125.68338 * 180.02562 * 18 17 16 20 20 C 1.41673 * 106.58361 * 179.97438 * 19 18 17 21 21 C 1.47370 * 126.76291 * 179.97438 * 20 19 18 22 22 O 1.21517 * 119.99576 * 359.97185 * 21 20 19 23 23 O 1.34748 * 120.00372 * 179.97438 * 21 20 19 24 24 C 1.37978 * 106.47519 * 0.02562 * 20 19 18 25 25 O 1.33574 * 108.41055 * 359.97438 * 24 20 19 26 26 C 1.39779 * 119.84980 * 0.27986 * 13 12 11 27 27 C 1.37649 * 119.92136 * 359.48839 * 26 13 12 28 28 H 0.96998 * 120.00029 * 359.97438 * 1 2 3 29 29 H 1.07999 * 119.96071 * 359.97438 * 11 10 9 30 30 H 1.08008 * 120.04204 * 179.97438 * 12 11 10 31 31 H 1.07992 * 120.00129 * 0.02562 * 16 14 13 32 32 H 1.07992 * 120.00173 * 0.02562 * 17 16 14 33 33 H 1.07995 * 126.70671 * 359.94887 * 19 18 17 34 34 H 0.96696 * 117.00128 * 180.02562 * 23 21 20 35 35 H 1.08004 * 125.79038 * 179.73563 * 24 20 19 36 36 H 1.08006 * 120.04113 * 179.70066 * 26 13 12 37 37 H 1.08005 * 119.96122 * 180.21315 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4964 2.0465 -1.4000 5 1 1.4464 2.6526 0.7001 6 1 3.5465 1.4401 0.7000 7 6 2.0086 -1.2015 -0.0005 8 1 1.4687 -2.1368 -0.0005 9 8 3.3565 -1.2015 -0.0011 10 6 3.9718 -2.4047 -0.1081 11 6 3.2176 -3.5739 -0.0944 12 6 3.8393 -4.7972 -0.2024 13 6 5.2299 -4.8641 -0.3263 14 6 5.9006 -6.1751 -0.4429 15 8 5.2413 -7.1999 -0.4316 16 6 7.3073 -6.2409 -0.5688 17 6 7.9239 -7.4463 -0.6755 18 6 9.3324 -7.5122 -0.8021 19 6 10.0694 -8.6565 -0.9172 20 6 11.4245 -8.2561 -1.0192 21 6 12.5966 -9.1381 -1.1606 22 8 12.4486 -10.3436 -1.1993 23 8 13.8324 -8.6080 -1.2470 24 6 11.4309 -6.8776 -0.9588 25 8 10.1703 -6.4552 -0.8293 26 6 5.9851 -3.6879 -0.3344 27 6 5.3565 -2.4677 -0.2308 28 1 -0.4850 0.8400 0.0004 29 1 2.1432 -3.5215 0.0018 30 1 3.2532 -5.7044 -0.1913 31 1 7.8916 -5.3327 -0.5793 32 1 7.3396 -8.3545 -0.6646 33 1 9.6927 -9.6685 -0.9279 34 1 14.5700 -9.2264 -1.3391 35 1 12.3068 -6.2474 -1.0042 36 1 7.0602 -3.7362 -0.4251 37 1 5.9391 -1.5583 -0.2404 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601073930.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:53:40 Heat of formation + Delta-G solvation = -113.224078 kcal Electronic energy + Delta-G solvation = -24787.621580 eV Core-core repulsion = 20655.492583 eV Total energy + Delta-G solvation = -4132.128998 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.087 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.89762 -41.27035 -40.91202 -40.31725 -37.98711 -37.08717 -35.39411 -34.55213 -34.37537 -32.11868 -31.67666 -30.11324 -27.57180 -26.06078 -25.66669 -23.68941 -23.33938 -22.36730 -21.46286 -20.38754 -19.64589 -19.30548 -18.80166 -18.67957 -17.51149 -17.50751 -17.07920 -16.70266 -16.44218 -16.39307 -15.90671 -15.73996 -15.60926 -15.39895 -15.24141 -14.52498 -14.38451 -14.23462 -14.20201 -13.95020 -13.70983 -13.39153 -13.10929 -13.08666 -12.64283 -12.54791 -12.45182 -11.97031 -11.89704 -11.85262 -11.38158 -11.11847 -10.96369 -10.81557 -9.96493 -9.32524 -9.09783 -8.55780 -6.29364 -0.88829 0.06075 0.22983 0.51492 1.26824 1.33280 1.38239 1.53073 1.63718 1.96461 2.06131 2.21389 2.25599 2.79317 2.93470 3.11867 3.19101 3.47914 3.73947 3.91532 3.98383 4.01468 4.15409 4.30703 4.43598 4.44525 4.57127 4.66002 4.79974 4.81914 4.91946 5.06137 5.09870 5.22580 5.32066 5.39048 5.53862 5.57765 5.68725 5.77152 5.79216 6.08335 6.66881 6.76330 6.94579 7.44375 8.54766 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.030341 B = 0.001847 C = 0.001743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 922.619238 B =15152.688242 C =16060.273058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.014 3.986 3 Si 0.974 3.026 4 H -0.264 1.264 5 H -0.268 1.268 6 H -0.257 1.257 7 C -0.408 4.408 8 H 0.083 0.917 9 O -0.225 6.225 10 C 0.153 3.847 11 C -0.251 4.251 12 C -0.022 4.022 13 C -0.250 4.250 14 C 0.434 3.566 15 O -0.512 6.512 16 C -0.222 4.222 17 C 0.018 3.982 18 C -0.018 4.018 19 C -0.108 4.108 20 C -0.262 4.262 21 C 0.564 3.436 22 O -0.554 6.554 23 O -0.501 6.501 24 C 0.108 3.892 25 O -0.153 6.153 26 C -0.011 4.011 27 C -0.198 4.198 28 H 0.288 0.712 29 H 0.114 0.886 30 H 0.125 0.875 31 H 0.159 0.841 32 H 0.162 0.838 33 H 0.171 0.829 34 H 0.437 0.563 35 H 0.270 0.730 36 H 0.176 0.824 37 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.549 -11.986 -2.435 31.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.186 4.186 3 Si 0.795 3.205 4 H -0.188 1.188 5 H -0.193 1.193 6 H -0.180 1.180 7 C -0.484 4.484 8 H 0.100 0.900 9 O -0.130 6.130 10 C 0.102 3.898 11 C -0.271 4.271 12 C -0.040 4.040 13 C -0.251 4.251 14 C 0.322 3.678 15 O -0.397 6.397 16 C -0.240 4.240 17 C 0.000 4.000 18 C -0.066 4.066 19 C -0.127 4.127 20 C -0.264 4.264 21 C 0.410 3.590 22 O -0.446 6.446 23 O -0.315 6.315 24 C 0.035 3.965 25 O -0.046 6.046 26 C -0.029 4.029 27 C -0.217 4.217 28 H 0.098 0.902 29 H 0.132 0.868 30 H 0.143 0.857 31 H 0.177 0.823 32 H 0.180 0.820 33 H 0.189 0.811 34 H 0.299 0.701 35 H 0.286 0.714 36 H 0.193 0.807 37 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 28.609 -11.881 -2.348 31.067 hybrid contribution -0.392 -0.198 -0.009 0.440 sum 28.217 -12.079 -2.357 30.784 Atomic orbital electron populations 1.69699 1.07157 1.30031 1.48414 1.25383 0.95898 1.02462 0.94885 0.85177 0.78973 0.76859 0.79503 1.18828 1.19275 1.18043 1.20768 0.77841 0.96365 1.53390 0.89971 1.83464 1.21537 1.27377 1.80647 1.19982 0.93498 0.84740 0.91612 1.21201 1.00630 0.92765 1.12474 1.21085 0.94560 0.96377 0.91993 1.20266 0.93802 0.95492 1.15588 1.19133 0.89789 0.87219 0.71675 1.90637 1.69624 1.37682 1.41760 1.22600 0.94877 1.00197 1.06352 1.20917 0.88391 0.99964 0.90720 1.19253 0.90900 0.84341 1.12094 1.22202 0.91090 1.00083 0.99320 1.19732 0.92381 0.94223 1.20083 1.19712 0.83000 0.85298 0.71029 1.90920 1.87174 1.17640 1.48902 1.84474 1.16574 1.45939 1.84553 1.26159 0.85766 0.93771 0.90777 1.84073 1.16829 1.35270 1.68445 1.21376 1.00897 0.89044 0.91534 1.20582 0.90132 1.00225 1.10776 0.90247 0.86833 0.85737 0.82325 0.82041 0.81134 0.70069 0.71440 0.80679 0.83369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.02 13.96 21.63 0.30 -52.72 16 2 C 0.01 0.77 5.50 84.86 0.47 1.24 16 3 Si 0.97 43.02 28.62 68.60 1.96 44.98 16 4 H -0.26 -11.17 7.11 99.48 0.71 -10.46 16 5 H -0.27 -11.14 7.11 99.48 0.71 -10.44 16 6 H -0.26 -11.11 7.11 99.48 0.71 -10.41 16 7 C -0.41 -23.19 9.94 67.94 0.68 -22.51 16 8 H 0.08 4.95 5.42 -2.91 -0.02 4.94 16 9 O -0.22 -11.52 8.57 -20.27 -0.17 -11.70 16 10 C 0.15 6.78 6.66 22.71 0.15 6.93 16 11 C -0.25 -11.05 9.15 22.35 0.20 -10.84 16 12 C -0.02 -0.82 9.58 22.50 0.22 -0.61 16 13 C -0.25 -7.95 5.88 -20.03 -0.12 -8.07 16 14 C 0.43 12.26 6.89 25.55 0.18 12.44 16 15 O -0.51 -17.37 16.11 -4.87 -0.08 -17.45 16 16 C -0.22 -4.38 8.94 22.48 0.20 -4.18 16 17 C 0.02 0.32 9.38 22.53 0.21 0.53 16 18 C -0.02 -0.27 6.77 22.71 0.15 -0.12 16 19 C -0.11 -1.56 10.64 22.73 0.24 -1.32 16 20 C -0.26 -3.24 6.16 -20.09 -0.12 -3.36 16 21 C 0.56 7.62 8.33 70.23 0.59 8.20 16 22 O -0.55 -11.85 17.72 19.78 0.35 -11.50 16 23 O -0.50 -2.81 13.27 -56.58 -0.75 -3.56 16 24 C 0.11 0.73 11.98 67.76 0.81 1.54 16 25 O -0.15 -1.77 10.10 -1.71 -0.02 -1.78 16 26 C -0.01 -0.29 9.42 22.50 0.21 -0.08 16 27 C -0.20 -6.71 9.97 22.35 0.22 -6.49 16 28 H 0.29 15.24 8.31 -92.71 -0.77 14.46 16 29 H 0.11 5.49 5.62 -2.91 -0.02 5.47 16 30 H 0.12 4.56 7.64 -2.91 -0.02 4.54 16 31 H 0.16 2.31 5.85 -2.91 -0.02 2.29 16 32 H 0.16 2.75 7.46 -2.91 -0.02 2.73 16 33 H 0.17 2.30 8.06 -2.91 -0.02 2.28 16 34 H 0.44 -1.03 9.11 -74.06 -0.67 -1.71 16 35 H 0.27 -0.77 8.06 -2.91 -0.02 -0.79 16 36 H 0.18 2.97 6.19 -2.91 -0.02 2.95 16 37 H 0.15 4.29 8.06 -2.91 -0.02 4.27 16 Total: -1.00 -76.67 344.65 6.38 -70.29 By element: Atomic # 1 Polarization: 9.64 SS G_CDS: 0.49 Total: 10.13 kcal Atomic # 6 Polarization: -30.98 SS G_CDS: 4.29 Total: -26.70 kcal Atomic # 7 Polarization: -53.02 SS G_CDS: 0.30 Total: -52.72 kcal Atomic # 8 Polarization: -45.32 SS G_CDS: -0.67 Total: -45.99 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 1.96 Total: 44.98 kcal Total: -76.67 6.38 -70.29 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601073930.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.931 kcal (2) G-P(sol) polarization free energy of solvation -76.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds