Wall clock time and date at job start Tue Mar 31 2020 15:53:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31458 * 1 3 3 Si 1.86797 * 119.99534 * 2 1 4 4 H 1.48499 * 109.47118 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47397 * 299.99786 * 3 2 1 6 6 H 1.48498 * 109.47094 * 60.00167 * 3 2 1 7 7 C 1.38797 * 120.00041 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99589 * 180.02562 * 7 2 1 9 9 O 1.34737 * 120.00050 * 0.02562 * 7 2 1 10 10 C 1.35546 * 116.99574 * 185.12141 * 9 7 2 11 11 C 1.39181 * 119.92444 * 353.96453 * 10 9 7 12 12 C 1.37606 * 120.08010 * 180.02562 * 11 10 9 13 13 C 1.39852 * 119.92312 * 0.02562 * 12 11 10 14 14 C 1.47608 * 120.08207 * 179.97438 * 13 12 11 15 15 O 1.21754 * 119.99888 * 359.97438 * 14 13 12 16 16 C 1.46403 * 119.99726 * 179.97438 * 14 13 12 17 17 C 1.35087 * 119.99559 * 173.52290 * 16 14 13 18 18 C 1.46974 * 119.99995 * 348.29429 * 17 16 14 19 19 C 1.41819 * 126.98586 * 313.61998 * 18 17 16 20 20 C 1.34684 * 107.04362 * 180.02562 * 19 18 17 21 21 O 1.33914 * 109.49463 * 359.97438 * 20 19 18 22 22 C 1.34697 * 109.86340 * 0.02562 * 21 20 19 23 23 C 1.46537 * 126.21825 * 179.97438 * 22 21 20 24 24 O 1.21608 * 120.00119 * 179.97438 * 23 22 21 25 25 O 1.34913 * 119.99611 * 0.02562 * 23 22 21 26 26 C 1.39848 * 119.83890 * 0.25039 * 13 12 11 27 27 C 1.37612 * 119.92116 * 359.49224 * 26 13 12 28 28 H 0.96997 * 120.00473 * 0.02562 * 1 2 3 29 29 H 1.08000 * 119.96047 * 0.02562 * 11 10 9 30 30 H 1.08005 * 120.04490 * 179.97438 * 12 11 10 31 31 H 1.07994 * 120.00516 * 353.52411 * 16 14 13 32 32 H 1.07995 * 120.00067 * 168.29665 * 17 16 14 33 33 H 1.08000 * 126.48382 * 0.03364 * 19 18 17 34 34 H 1.07999 * 125.25452 * 179.73118 * 20 19 18 35 35 H 0.96704 * 113.99699 * 179.97438 * 25 23 22 36 36 H 1.08001 * 120.04081 * 179.72173 * 26 13 12 37 37 H 1.08005 * 119.96219 * 180.25153 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3146 0.0000 0.0000 3 14 2.2484 1.6178 0.0000 4 1 3.7084 1.3465 0.0006 5 1 1.8897 2.3965 -1.2125 6 1 1.8897 2.3964 1.2125 7 6 2.0086 -1.2020 0.0005 8 1 3.0886 -1.2019 0.0010 9 8 1.3349 -2.3689 0.0005 10 6 2.0690 -3.5032 0.1089 11 6 3.4590 -3.4353 0.0869 12 6 4.2074 -4.5849 0.1961 13 6 3.5698 -5.8225 0.3288 14 6 4.3692 -7.0579 0.4457 15 8 5.5852 -7.0003 0.4262 16 6 3.6997 -8.3524 0.5851 17 6 4.4232 -9.4930 0.5604 18 6 5.8314 -9.4611 0.1406 19 6 6.3691 -8.7992 -0.9925 20 6 7.6954 -9.0331 -0.9938 21 8 8.0161 -9.7936 0.0607 22 6 6.9096 -10.0754 0.7752 23 6 6.8501 -10.8815 1.9975 24 8 5.7845 -11.0644 2.5540 25 8 7.9779 -11.4199 2.5059 26 6 2.1729 -5.8874 0.3447 27 6 1.4309 -4.7332 0.2403 28 1 -0.4851 0.8400 -0.0004 29 1 3.9508 -2.4793 -0.0160 30 1 5.2860 -4.5317 0.1786 31 1 2.6276 -8.3956 0.7075 32 1 3.9669 -10.4282 0.8492 33 1 5.8190 -8.2174 -1.7174 34 1 8.3922 -8.6673 -1.7335 35 1 7.8390 -11.9342 3.3130 36 1 1.6771 -6.8419 0.4425 37 1 0.3521 -4.7822 0.2566 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601074162.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:53:48 Heat of formation + Delta-G solvation = -82.427027 kcal Electronic energy + Delta-G solvation = -25828.945903 eV Core-core repulsion = 21698.152365 eV Total energy + Delta-G solvation = -4130.793537 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.087 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.75696 -40.19261 -39.59840 -38.65062 -36.53849 -36.27615 -34.55686 -32.57493 -31.85608 -30.49169 -30.16439 -29.33267 -25.77581 -25.12838 -23.89734 -22.38253 -21.96226 -21.19863 -20.42037 -19.02240 -18.53910 -18.13958 -17.74639 -17.18563 -16.74442 -16.24755 -15.93089 -15.35171 -14.93878 -14.63400 -14.35061 -14.20291 -14.02104 -13.95534 -13.75214 -13.55209 -13.12379 -12.93883 -12.79255 -12.71905 -12.24681 -11.95475 -11.88260 -11.65218 -11.40950 -11.27040 -10.96049 -10.77015 -10.58336 -10.52172 -9.56669 -9.46684 -9.05744 -8.95821 -8.59893 -8.39587 -7.43935 -6.69523 -4.24481 0.32068 1.02331 1.88493 2.13739 2.24586 2.27803 2.76149 3.00001 3.02951 3.08914 3.13246 3.44400 3.79398 4.38114 4.48471 4.49992 4.65098 4.88898 4.93665 5.02849 5.21345 5.27898 5.49191 5.55151 5.58684 5.66760 5.73736 5.94192 6.01293 6.09070 6.10641 6.17652 6.37726 6.47240 6.70056 6.72523 6.88184 6.97305 7.19478 7.22578 7.47612 7.60409 7.76427 8.03878 8.75377 9.41696 10.46952 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.026002 B = 0.002257 C = 0.002178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.562886 B =12401.754433 C =12853.644101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.849 5.849 2 C 0.042 3.958 3 Si 0.945 3.055 4 H -0.264 1.264 5 H -0.273 1.273 6 H -0.273 1.273 7 C -0.394 4.394 8 H 0.099 0.901 9 O -0.159 6.159 10 C 0.175 3.825 11 C -0.250 4.250 12 C -0.008 4.008 13 C -0.269 4.269 14 C 0.419 3.581 15 O -0.472 6.472 16 C -0.195 4.195 17 C -0.030 4.030 18 C -0.026 4.026 19 C -0.171 4.171 20 C 0.002 3.998 21 O -0.153 6.153 22 C -0.076 4.076 23 C 0.568 3.432 24 O -0.493 6.493 25 O -0.497 6.497 26 C -0.028 4.028 27 C -0.205 4.205 28 H 0.274 0.726 29 H 0.132 0.868 30 H 0.118 0.882 31 H 0.141 0.859 32 H 0.144 0.856 33 H 0.157 0.843 34 H 0.212 0.788 35 H 0.414 0.586 36 H 0.120 0.880 37 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.356 -18.380 -0.447 21.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.482 5.482 2 C -0.164 4.164 3 Si 0.769 3.231 4 H -0.188 1.188 5 H -0.199 1.199 6 H -0.199 1.199 7 C -0.469 4.469 8 H 0.116 0.884 9 O -0.059 6.059 10 C 0.118 3.882 11 C -0.269 4.269 12 C -0.027 4.027 13 C -0.271 4.271 14 C 0.304 3.696 15 O -0.354 6.354 16 C -0.213 4.213 17 C -0.048 4.048 18 C -0.028 4.028 19 C -0.190 4.190 20 C -0.067 4.067 21 O -0.048 6.048 22 C -0.126 4.126 23 C 0.413 3.587 24 O -0.383 6.383 25 O -0.307 6.307 26 C -0.047 4.047 27 C -0.224 4.224 28 H 0.085 0.915 29 H 0.149 0.851 30 H 0.136 0.864 31 H 0.159 0.841 32 H 0.161 0.839 33 H 0.174 0.826 34 H 0.228 0.772 35 H 0.272 0.728 36 H 0.138 0.862 37 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 11.579 -18.023 -0.601 21.431 hybrid contribution 0.061 0.750 0.452 0.877 sum 11.640 -17.274 -0.149 20.830 Atomic orbital electron populations 1.69995 1.06196 1.28296 1.43685 1.25425 0.95905 0.99210 0.95888 0.85571 0.79287 0.79705 0.78505 1.18801 1.19861 1.19853 1.21563 0.92198 0.80479 1.52662 0.88384 1.83881 1.35124 1.11885 1.75035 1.19658 0.90337 0.87868 0.90355 1.21113 0.93595 0.99142 1.13047 1.20894 0.99055 0.91000 0.91710 1.19703 0.93789 0.93901 1.19744 1.20327 0.88209 0.88556 0.72505 1.90627 1.15819 1.89024 1.39889 1.23840 1.01121 0.93410 1.02959 1.21879 0.90030 0.99045 0.93842 1.19747 0.93249 0.95061 0.94783 1.21697 0.94412 1.02983 0.99877 1.24167 0.96924 0.95461 0.90186 1.83992 1.33411 1.55078 1.32368 1.20915 0.85376 1.09334 0.96980 1.18815 0.81836 0.76369 0.81696 1.90997 1.30321 1.58250 1.58739 1.85090 1.35712 1.64751 1.45191 1.20861 0.92430 0.97025 0.94372 1.20167 0.99840 0.90123 1.12295 0.91546 0.85071 0.86441 0.84105 0.83877 0.82566 0.77162 0.72833 0.86199 0.85936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -23.55 13.67 55.49 0.76 -22.79 16 2 C 0.04 1.10 5.50 -17.50 -0.10 1.01 16 3 Si 0.95 19.42 29.55 -169.99 -5.02 14.40 16 4 H -0.26 -5.21 7.11 56.52 0.40 -4.81 16 5 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 6 H -0.27 -5.52 7.11 56.52 0.40 -5.11 16 7 C -0.39 -10.40 9.49 30.94 0.29 -10.11 16 8 H 0.10 2.40 5.19 -52.49 -0.27 2.13 16 9 O -0.16 -4.27 9.74 0.94 0.01 -4.26 16 10 C 0.18 4.00 6.66 -38.88 -0.26 3.74 16 11 C -0.25 -5.26 9.14 -39.46 -0.36 -5.62 16 12 C -0.01 -0.15 9.59 -39.21 -0.38 -0.53 16 13 C -0.27 -4.73 5.88 -104.87 -0.62 -5.35 16 14 C 0.42 6.72 6.72 -32.48 -0.22 6.50 16 15 O -0.47 -8.31 12.47 5.14 0.06 -8.24 16 16 C -0.19 -2.50 9.50 -37.42 -0.36 -2.85 16 17 C -0.03 -0.36 9.00 -37.16 -0.33 -0.70 16 18 C -0.03 -0.35 4.57 -104.57 -0.48 -0.82 16 19 C -0.17 -2.05 7.96 -39.47 -0.31 -2.36 16 20 C 0.00 0.02 12.01 29.47 0.35 0.37 16 21 O -0.15 -1.86 10.63 5.50 0.06 -1.80 16 22 C -0.08 -0.99 7.29 -35.81 -0.26 -1.25 16 23 C 0.57 6.77 8.27 34.08 0.28 7.05 16 24 O -0.49 -6.61 16.32 -19.35 -0.32 -6.92 16 25 O -0.50 -4.40 13.56 -42.41 -0.58 -4.98 16 26 C -0.03 -0.47 9.44 -39.21 -0.37 -0.84 16 27 C -0.21 -4.02 9.97 -39.45 -0.39 -4.42 16 28 H 0.27 6.92 8.31 -40.82 -0.34 6.59 16 29 H 0.13 2.74 5.63 -52.49 -0.30 2.45 16 30 H 0.12 2.09 7.64 -52.48 -0.40 1.68 16 31 H 0.14 1.44 6.35 -52.49 -0.33 1.11 16 32 H 0.14 1.49 7.76 -52.49 -0.41 1.08 16 33 H 0.16 1.78 7.97 -52.49 -0.42 1.36 16 34 H 0.21 1.22 8.06 -52.49 -0.42 0.79 16 35 H 0.41 1.51 8.98 45.56 0.41 1.92 16 36 H 0.12 1.54 6.23 -52.49 -0.33 1.21 16 37 H 0.12 2.26 8.06 -52.48 -0.42 1.84 16 LS Contribution 338.43 15.07 5.10 5.10 Total: -1.00 -33.09 338.43 -5.45 -38.55 By element: Atomic # 1 Polarization: 9.16 SS G_CDS: -2.03 Total: 7.14 kcal Atomic # 6 Polarization: -12.68 SS G_CDS: -3.50 Total: -16.19 kcal Atomic # 7 Polarization: -23.55 SS G_CDS: 0.76 Total: -22.79 kcal Atomic # 8 Polarization: -25.45 SS G_CDS: -0.76 Total: -26.21 kcal Atomic # 14 Polarization: 19.42 SS G_CDS: -5.02 Total: 14.40 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -33.09 -5.45 -38.55 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601074162.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.881 kcal (2) G-P(sol) polarization free energy of solvation -33.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds