Wall clock time and date at job start Tue Mar 31 2020 15:53:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31458 * 1 3 3 Si 1.86797 * 119.99534 * 2 1 4 4 H 1.48499 * 109.47118 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47397 * 299.99786 * 3 2 1 6 6 H 1.48498 * 109.47094 * 60.00167 * 3 2 1 7 7 C 1.38797 * 120.00041 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99589 * 180.02562 * 7 2 1 9 9 O 1.34737 * 120.00050 * 0.02562 * 7 2 1 10 10 C 1.35546 * 116.99574 * 185.12141 * 9 7 2 11 11 C 1.39181 * 119.92444 * 353.96453 * 10 9 7 12 12 C 1.37606 * 120.08010 * 180.02562 * 11 10 9 13 13 C 1.39852 * 119.92312 * 0.02562 * 12 11 10 14 14 C 1.47608 * 120.08207 * 179.97438 * 13 12 11 15 15 O 1.21754 * 119.99888 * 359.97438 * 14 13 12 16 16 C 1.46403 * 119.99726 * 179.97438 * 14 13 12 17 17 C 1.35087 * 119.99559 * 173.52290 * 16 14 13 18 18 C 1.46974 * 119.99995 * 348.29429 * 17 16 14 19 19 C 1.41819 * 126.98586 * 313.61998 * 18 17 16 20 20 C 1.34684 * 107.04362 * 180.02562 * 19 18 17 21 21 O 1.33914 * 109.49463 * 359.97438 * 20 19 18 22 22 C 1.34697 * 109.86340 * 0.02562 * 21 20 19 23 23 C 1.46537 * 126.21825 * 179.97438 * 22 21 20 24 24 O 1.21608 * 120.00119 * 179.97438 * 23 22 21 25 25 O 1.34913 * 119.99611 * 0.02562 * 23 22 21 26 26 C 1.39848 * 119.83890 * 0.25039 * 13 12 11 27 27 C 1.37612 * 119.92116 * 359.49224 * 26 13 12 28 28 H 0.96997 * 120.00473 * 0.02562 * 1 2 3 29 29 H 1.08000 * 119.96047 * 0.02562 * 11 10 9 30 30 H 1.08005 * 120.04490 * 179.97438 * 12 11 10 31 31 H 1.07994 * 120.00516 * 353.52411 * 16 14 13 32 32 H 1.07995 * 120.00067 * 168.29665 * 17 16 14 33 33 H 1.08000 * 126.48382 * 0.03364 * 19 18 17 34 34 H 1.07999 * 125.25452 * 179.73118 * 20 19 18 35 35 H 0.96704 * 113.99699 * 179.97438 * 25 23 22 36 36 H 1.08001 * 120.04081 * 179.72173 * 26 13 12 37 37 H 1.08005 * 119.96219 * 180.25153 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3146 0.0000 0.0000 3 14 2.2484 1.6178 0.0000 4 1 3.7084 1.3465 0.0006 5 1 1.8897 2.3965 -1.2125 6 1 1.8897 2.3964 1.2125 7 6 2.0086 -1.2020 0.0005 8 1 3.0886 -1.2019 0.0010 9 8 1.3349 -2.3689 0.0005 10 6 2.0690 -3.5032 0.1089 11 6 3.4590 -3.4353 0.0869 12 6 4.2074 -4.5849 0.1961 13 6 3.5698 -5.8225 0.3288 14 6 4.3692 -7.0579 0.4457 15 8 5.5852 -7.0003 0.4262 16 6 3.6997 -8.3524 0.5851 17 6 4.4232 -9.4930 0.5604 18 6 5.8314 -9.4611 0.1406 19 6 6.3691 -8.7992 -0.9925 20 6 7.6954 -9.0331 -0.9938 21 8 8.0161 -9.7936 0.0607 22 6 6.9096 -10.0754 0.7752 23 6 6.8501 -10.8815 1.9975 24 8 5.7845 -11.0644 2.5540 25 8 7.9779 -11.4199 2.5059 26 6 2.1729 -5.8874 0.3447 27 6 1.4309 -4.7332 0.2403 28 1 -0.4851 0.8400 -0.0004 29 1 3.9508 -2.4793 -0.0160 30 1 5.2860 -4.5317 0.1786 31 1 2.6276 -8.3956 0.7075 32 1 3.9669 -10.4282 0.8492 33 1 5.8190 -8.2174 -1.7174 34 1 8.3922 -8.6673 -1.7335 35 1 7.8390 -11.9342 3.3130 36 1 1.6771 -6.8419 0.4425 37 1 0.3521 -4.7822 0.2566 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601074162.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:53:48 Heat of formation + Delta-G solvation = -103.730147 kcal Electronic energy + Delta-G solvation = -25829.869675 eV Core-core repulsion = 21698.152365 eV Total energy + Delta-G solvation = -4131.717310 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.087 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.64574 -41.11700 -41.03615 -40.15918 -37.92253 -37.31242 -35.56989 -34.41712 -32.89838 -31.90310 -31.36323 -30.67496 -27.57834 -26.26775 -24.96127 -23.76204 -23.28743 -22.26364 -21.55500 -20.29880 -19.72263 -19.37740 -19.02922 -18.45866 -17.77465 -17.42649 -16.99026 -16.45937 -16.23374 -16.18720 -15.75931 -15.68007 -15.35866 -15.28408 -14.88601 -14.67805 -14.50987 -14.29051 -14.04785 -13.68079 -13.60934 -13.37470 -13.15112 -13.02609 -12.75571 -12.53632 -12.36296 -12.17854 -12.12434 -11.57515 -11.26204 -10.88185 -10.65900 -9.94560 -9.93096 -9.59881 -9.11659 -8.56150 -6.22672 -0.68660 -0.12104 0.55559 0.61687 1.35020 1.38766 1.41344 1.45337 1.52754 1.79875 2.12011 2.14109 2.36432 2.84220 3.13636 3.21307 3.39170 3.53468 3.82419 3.99158 4.05287 4.13481 4.30973 4.36585 4.41424 4.51994 4.61902 4.76967 4.80693 4.91512 5.03967 5.09405 5.18425 5.21498 5.32369 5.34986 5.42798 5.58058 5.63303 5.85087 5.93273 6.03658 6.72653 6.75013 6.88261 7.62996 8.65723 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.026002 B = 0.002257 C = 0.002178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.562886 B =12401.754433 C =12853.644101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C -0.015 4.015 3 Si 1.018 2.982 4 H -0.253 1.253 5 H -0.266 1.266 6 H -0.267 1.267 7 C -0.419 4.419 8 H 0.105 0.895 9 O -0.212 6.212 10 C 0.145 3.855 11 C -0.257 4.257 12 C -0.015 4.015 13 C -0.254 4.254 14 C 0.423 3.577 15 O -0.485 6.485 16 C -0.205 4.205 17 C -0.014 4.014 18 C -0.048 4.048 19 C -0.194 4.194 20 C 0.018 3.982 21 O -0.159 6.159 22 C -0.097 4.097 23 C 0.572 3.428 24 O -0.514 6.514 25 O -0.492 6.492 26 C -0.010 4.010 27 C -0.212 4.212 28 H 0.277 0.723 29 H 0.124 0.876 30 H 0.129 0.871 31 H 0.173 0.827 32 H 0.165 0.835 33 H 0.159 0.841 34 H 0.253 0.747 35 H 0.436 0.564 36 H 0.171 0.829 37 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.265 -21.003 -0.350 24.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.214 4.214 3 Si 0.837 3.163 4 H -0.176 1.176 5 H -0.191 1.191 6 H -0.192 1.192 7 C -0.495 4.495 8 H 0.122 0.878 9 O -0.116 6.116 10 C 0.092 3.908 11 C -0.276 4.276 12 C -0.034 4.034 13 C -0.256 4.256 14 C 0.308 3.692 15 O -0.366 6.366 16 C -0.224 4.224 17 C -0.032 4.032 18 C -0.051 4.051 19 C -0.213 4.213 20 C -0.051 4.051 21 O -0.055 6.055 22 C -0.147 4.147 23 C 0.417 3.583 24 O -0.406 6.406 25 O -0.305 6.305 26 C -0.028 4.028 27 C -0.231 4.231 28 H 0.086 0.914 29 H 0.141 0.859 30 H 0.147 0.853 31 H 0.190 0.810 32 H 0.182 0.818 33 H 0.176 0.824 34 H 0.269 0.731 35 H 0.297 0.703 36 H 0.189 0.811 37 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 13.541 -20.720 -0.485 24.757 hybrid contribution -0.222 1.026 0.431 1.135 sum 13.319 -19.694 -0.054 23.775 Atomic orbital electron populations 1.70116 1.08023 1.29238 1.47120 1.26610 0.96827 1.02720 0.95291 0.84533 0.78265 0.74749 0.78738 1.17600 1.19089 1.19235 1.21941 0.92704 0.81162 1.53657 0.87806 1.83870 1.36239 1.12768 1.78735 1.20240 0.91277 0.88189 0.91069 1.21157 0.93257 0.99792 1.13392 1.21074 0.99647 0.91001 0.91636 1.20178 0.94657 0.94281 1.16506 1.20528 0.87858 0.89147 0.71644 1.90639 1.16619 1.89347 1.40025 1.23808 1.02510 0.91430 1.04623 1.22191 0.89604 0.99761 0.91619 1.20093 0.93932 0.95551 0.95481 1.21867 0.95351 1.03914 1.00146 1.24985 0.97228 0.93363 0.89536 1.84003 1.33384 1.55312 1.32800 1.21177 0.85646 1.10059 0.97791 1.18740 0.82074 0.76108 0.81384 1.90978 1.31084 1.59187 1.59336 1.85049 1.34386 1.64652 1.46403 1.21335 0.91905 0.98012 0.91537 1.20505 1.00735 0.89912 1.11944 0.91403 0.85856 0.85303 0.80953 0.81822 0.82350 0.73147 0.70273 0.81138 0.85128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.30 13.67 21.64 0.30 -53.00 16 2 C -0.01 -0.81 5.50 84.88 0.47 -0.34 16 3 Si 1.02 41.18 29.55 68.60 2.03 43.20 16 4 H -0.25 -9.53 7.11 99.48 0.71 -8.83 16 5 H -0.27 -10.29 7.11 99.48 0.71 -9.58 16 6 H -0.27 -10.40 7.11 99.48 0.71 -9.70 16 7 C -0.42 -23.39 9.49 67.95 0.64 -22.75 16 8 H 0.10 5.36 5.19 -2.91 -0.02 5.35 16 9 O -0.21 -12.08 9.74 -19.55 -0.19 -12.27 16 10 C 0.15 6.86 6.66 22.73 0.15 7.01 16 11 C -0.26 -11.03 9.14 22.35 0.20 -10.82 16 12 C -0.02 -0.56 9.59 22.51 0.22 -0.34 16 13 C -0.25 -8.26 5.88 -20.02 -0.12 -8.38 16 14 C 0.42 12.19 6.72 26.87 0.18 12.37 16 15 O -0.48 -15.78 12.47 -4.52 -0.06 -15.84 16 16 C -0.21 -4.42 9.50 23.67 0.22 -4.20 16 17 C -0.01 -0.29 9.00 23.84 0.21 -0.07 16 18 C -0.05 -1.15 4.57 -19.83 -0.09 -1.24 16 19 C -0.19 -4.15 7.96 22.34 0.18 -3.98 16 20 C 0.02 0.31 12.01 67.00 0.80 1.11 16 21 O -0.16 -3.50 10.63 -2.54 -0.03 -3.53 16 22 C -0.10 -2.32 7.29 24.71 0.18 -2.14 16 23 C 0.57 12.41 8.27 69.99 0.58 12.99 16 24 O -0.51 -12.66 16.32 19.48 0.32 -12.34 16 25 O -0.49 -7.55 13.56 -57.00 -0.77 -8.32 16 26 C -0.01 -0.30 9.44 22.51 0.21 -0.09 16 27 C -0.21 -8.17 9.97 22.35 0.22 -7.94 16 28 H 0.28 14.77 8.31 -92.71 -0.77 14.00 16 29 H 0.12 5.39 5.63 -2.91 -0.02 5.37 16 30 H 0.13 4.42 7.64 -2.91 -0.02 4.39 16 31 H 0.17 2.54 6.35 -2.91 -0.02 2.52 16 32 H 0.16 2.78 7.76 -2.91 -0.02 2.76 16 33 H 0.16 3.23 7.97 -2.91 -0.02 3.21 16 34 H 0.25 1.90 8.06 -2.91 -0.02 1.88 16 35 H 0.44 2.08 8.98 -74.05 -0.66 1.41 16 36 H 0.17 3.42 6.23 -2.91 -0.02 3.40 16 37 H 0.13 4.77 8.06 -2.91 -0.02 4.75 16 Total: -1.00 -76.35 338.43 6.37 -69.98 By element: Atomic # 1 Polarization: 20.44 SS G_CDS: 0.50 Total: 20.94 kcal Atomic # 6 Polarization: -33.10 SS G_CDS: 4.27 Total: -28.83 kcal Atomic # 7 Polarization: -53.30 SS G_CDS: 0.30 Total: -53.00 kcal Atomic # 8 Polarization: -51.57 SS G_CDS: -0.73 Total: -52.30 kcal Atomic # 14 Polarization: 41.18 SS G_CDS: 2.03 Total: 43.20 kcal Total: -76.35 6.37 -69.98 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601074162.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.746 kcal (2) G-P(sol) polarization free energy of solvation -76.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds