Wall clock time and date at job start Tue Mar 31 2020 15:30:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46897 * 109.47101 * 2 1 4 4 C 1.46899 * 111.00082 * 193.95138 * 3 2 1 5 5 C 1.50703 * 109.46901 * 66.05142 * 4 3 2 6 6 H 1.08008 * 119.99927 * 359.97438 * 5 4 3 7 7 C 1.37871 * 120.00128 * 180.02562 * 5 4 3 8 8 N 1.31520 * 120.00063 * 180.02562 * 7 5 4 9 9 Si 1.86801 * 120.00164 * 359.97438 * 7 5 4 10 10 H 1.48496 * 109.47110 * 90.00307 * 9 7 5 11 11 H 1.48502 * 109.47197 * 210.00359 * 9 7 5 12 12 H 1.48507 * 109.46790 * 330.00179 * 9 7 5 13 13 C 1.39793 * 110.99711 * 70.00567 * 3 2 1 14 14 C 1.38925 * 120.00591 * 63.94907 * 13 3 2 15 15 C 1.38287 * 120.25223 * 180.02562 * 14 13 3 16 16 C 1.37946 * 120.26223 * 0.25916 * 15 14 13 17 17 N 1.48029 * 119.99383 * 179.74510 * 16 15 14 18 18 O 1.21797 * 120.00026 * 359.97438 * 17 16 15 19 19 O 1.21794 * 119.99754 * 180.02562 * 17 16 15 20 20 C 1.39684 * 120.00883 * 359.48705 * 16 15 14 21 21 C 1.47666 * 120.12861 * 180.27477 * 20 16 15 22 22 O 1.21481 * 119.99766 * 270.23424 * 21 20 16 23 23 O 1.34719 * 119.99775 * 90.23061 * 21 20 16 24 24 C 1.38790 * 120.00101 * 243.97461 * 13 3 2 25 25 Cl 1.73600 * 120.13283 * 359.95200 * 24 13 3 26 26 H 1.09004 * 109.47155 * 59.99690 * 1 2 3 27 27 H 1.09007 * 109.47473 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47350 * 299.99840 * 1 2 3 29 29 H 1.09000 * 109.46624 * 240.00210 * 2 1 3 30 30 H 1.08994 * 109.47094 * 120.00382 * 2 1 3 31 31 H 1.08995 * 109.47441 * 186.04980 * 4 3 2 32 32 H 1.09005 * 109.47270 * 306.05785 * 4 3 2 33 33 H 0.96997 * 119.99701 * 179.97438 * 8 7 5 34 34 H 1.08001 * 119.87542 * 0.02562 * 14 13 3 35 35 H 1.08002 * 119.86393 * 179.97438 * 15 14 13 36 36 H 0.96699 * 116.99637 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4500 1.4377 -0.3306 5 6 3.6535 0.9855 -1.7538 6 1 2.8052 0.6883 -2.3525 7 6 4.9227 0.9503 -2.2911 8 7 5.1003 0.5562 -3.5332 9 14 6.3901 1.4636 -1.2553 10 1 6.9292 0.2795 -0.5394 11 1 7.4428 2.0316 -2.1354 12 1 5.9647 2.4879 -0.2677 13 6 1.7659 2.0060 1.2264 14 6 2.3719 1.5326 2.3834 15 6 2.1241 2.1427 3.5994 16 6 1.2691 3.2227 3.6739 17 7 1.0037 3.8677 4.9796 18 8 1.5398 3.4446 5.9880 19 8 0.2485 4.8210 5.0454 20 6 0.6580 3.7110 2.5166 21 6 -0.2529 4.8707 2.5924 22 8 -1.4403 4.6990 2.7834 23 8 0.2328 6.1192 2.4498 24 6 0.9080 3.0952 1.2884 25 17 0.1492 3.6902 -0.1552 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8932 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 3.8113 2.4599 -0.2190 32 1 4.0028 0.7814 0.3416 33 1 5.9932 0.5317 -3.9113 34 1 3.0391 0.6848 2.3330 35 1 2.5983 1.7692 4.4950 36 1 -0.4020 6.8464 2.5074 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001605438835.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:30:11 Heat of formation + Delta-G solvation = -54.301463 kcal Electronic energy + Delta-G solvation = -26174.024098 eV Core-core repulsion = 22074.310078 eV Total energy + Delta-G solvation = -4099.714020 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.070 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.54188 -40.76326 -39.83232 -37.09505 -36.84158 -36.67762 -36.24695 -32.91214 -31.96894 -31.61633 -30.39332 -27.85452 -26.11781 -24.92684 -22.95123 -22.60930 -22.26415 -20.50389 -19.63531 -18.98513 -18.31771 -17.76264 -17.49741 -17.16259 -16.62526 -15.87692 -15.46476 -15.33161 -15.12881 -14.31711 -14.02358 -13.84744 -13.61950 -13.45973 -12.83717 -12.66005 -12.54681 -11.97093 -11.88292 -11.74380 -11.65637 -11.53804 -11.46176 -11.37541 -11.16202 -11.08762 -10.96147 -10.79072 -10.68683 -10.11871 -9.69194 -9.59530 -9.26337 -8.82123 -8.18839 -6.27925 -4.28686 -0.57058 0.27828 0.95890 1.01140 1.76457 1.83320 2.44266 2.75236 3.09984 3.18257 3.20823 3.81396 4.04184 4.19963 4.26199 4.40896 4.61563 4.84990 4.93220 5.02854 5.15937 5.35297 5.47066 5.55465 5.65174 5.80529 5.95086 6.06424 6.18201 6.26890 6.31802 6.50917 6.54377 7.19976 7.27644 7.36609 7.54056 7.56869 8.32634 8.79001 9.30375 10.84237 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.014895 B = 0.004425 C = 0.004088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1879.408522 B = 6325.948596 C = 6847.063259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.059 3.941 3 N -0.496 5.496 4 C 0.167 3.833 5 C -0.517 4.517 6 H 0.087 0.913 7 C 0.076 3.924 8 N -0.890 5.890 9 Si 0.869 3.131 10 H -0.275 1.275 11 H -0.282 1.282 12 H -0.267 1.267 13 C 0.183 3.817 14 C -0.127 4.127 15 C -0.037 4.037 16 C -0.024 4.024 17 N 0.032 4.968 18 O -0.141 6.141 19 O -0.160 6.160 20 C -0.038 4.038 21 C 0.542 3.458 22 O -0.480 6.480 23 O -0.495 6.495 24 C 0.008 3.992 25 Cl 0.001 6.999 26 H 0.067 0.933 27 H 0.059 0.941 28 H 0.040 0.960 29 H 0.109 0.891 30 H 0.032 0.968 31 H 0.034 0.966 32 H -0.004 1.004 33 H 0.267 0.733 34 H 0.163 0.837 35 H 0.166 0.834 36 H 0.420 0.580 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.202 3.928 12.316 14.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.066 4.066 3 N -0.218 5.218 4 C 0.044 3.956 5 C -0.555 4.555 6 H 0.105 0.895 7 C -0.127 4.127 8 N -0.527 5.527 9 Si 0.696 3.304 10 H -0.200 1.200 11 H -0.208 1.208 12 H -0.192 1.192 13 C 0.086 3.914 14 C -0.148 4.148 15 C -0.057 4.057 16 C -0.108 4.108 17 N 0.553 4.447 18 O -0.361 6.361 19 O -0.373 6.373 20 C -0.042 4.042 21 C 0.382 3.618 22 O -0.367 6.367 23 O -0.307 6.307 24 C -0.021 4.021 25 Cl 0.031 6.969 26 H 0.086 0.914 27 H 0.078 0.922 28 H 0.060 0.940 29 H 0.127 0.873 30 H 0.050 0.950 31 H 0.052 0.948 32 H 0.014 0.986 33 H 0.077 0.923 34 H 0.180 0.820 35 H 0.184 0.816 36 H 0.280 0.720 Dipole moment (debyes) X Y Z Total from point charges -7.319 3.535 10.997 13.675 hybrid contribution 0.854 0.560 1.297 1.651 sum -6.465 4.095 12.294 14.482 Atomic orbital electron populations 1.21844 0.95558 1.01353 1.02063 1.22234 0.94970 0.86566 1.02848 1.59973 1.22102 1.18104 1.21641 1.20381 0.79739 0.97173 0.98311 1.20838 0.94833 1.45015 0.94815 0.89516 1.24830 0.98504 0.94576 0.94815 1.69861 1.22820 1.46629 1.13431 0.86962 0.83228 0.79418 0.80782 1.20042 1.20754 1.19190 1.19287 0.89482 0.90937 0.91678 1.22121 1.00518 1.01331 0.90793 1.20965 0.93030 0.91189 1.00537 1.20771 1.06669 1.01027 0.82328 1.43375 0.98924 0.99963 1.02468 1.94536 1.50572 1.66577 1.24396 1.94549 1.32352 1.18119 1.92268 1.18475 0.98249 0.95851 0.91586 1.19957 0.86236 0.83031 0.72561 1.90950 1.16106 1.86093 1.43513 1.84589 1.46163 1.15997 1.83995 1.20763 0.97842 0.96078 0.87433 1.98439 1.78549 1.86185 1.33758 0.91357 0.92210 0.94047 0.87288 0.94960 0.94762 0.98617 0.92276 0.81972 0.81625 0.72008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.02 9.95 37.16 0.37 -1.65 16 2 C 0.06 0.91 5.44 -3.83 -0.02 0.89 16 3 N -0.50 -8.61 3.85 -172.47 -0.66 -9.27 16 4 C 0.17 3.43 3.37 -4.97 -0.02 3.41 16 5 C -0.52 -12.90 8.87 -34.44 -0.31 -13.20 16 6 H 0.09 2.37 7.47 -52.48 -0.39 1.98 16 7 C 0.08 1.99 5.47 -17.82 -0.10 1.89 16 8 N -0.89 -25.10 13.96 55.43 0.77 -24.32 16 9 Si 0.87 19.41 27.47 -169.99 -4.67 14.74 16 10 H -0.27 -5.99 7.11 56.52 0.40 -5.58 16 11 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 12 H -0.27 -5.72 6.54 56.52 0.37 -5.35 16 13 C 0.18 2.76 3.73 -83.77 -0.31 2.44 16 14 C -0.13 -1.56 8.52 -39.31 -0.33 -1.89 16 15 C -0.04 -0.42 9.53 -39.67 -0.38 -0.80 16 16 C -0.02 -0.33 6.88 -79.51 -0.55 -0.88 16 17 N 0.03 0.48 4.45 34.18 0.15 0.63 16 18 O -0.14 -1.99 18.44 -29.46 -0.54 -2.53 16 19 O -0.16 -2.51 16.29 -34.85 -0.57 -3.07 16 20 C -0.04 -0.55 5.75 -104.98 -0.60 -1.16 16 21 C 0.54 7.88 4.19 34.58 0.14 8.03 16 22 O -0.48 -7.84 17.76 -23.45 -0.42 -8.26 16 23 O -0.50 -5.78 13.39 -42.89 -0.57 -6.36 16 24 C 0.01 0.13 6.37 -38.85 -0.25 -0.12 16 25 Cl 0.00 0.01 27.52 -51.86 -1.43 -1.41 16 26 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 27 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 28 H 0.04 0.54 7.52 -51.93 -0.39 0.15 16 29 H 0.11 1.91 6.60 -51.93 -0.34 1.57 16 30 H 0.03 0.43 7.06 -51.93 -0.37 0.07 16 31 H 0.03 0.74 7.12 -51.93 -0.37 0.37 16 32 H 0.00 -0.07 6.89 -51.93 -0.36 -0.43 16 33 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 34 H 0.16 1.72 7.12 -52.49 -0.37 1.34 16 35 H 0.17 1.41 7.60 -52.49 -0.40 1.02 16 36 H 0.42 2.73 9.11 45.56 0.42 3.15 16 LS Contribution 333.05 15.07 5.02 5.02 Total: -1.00 -30.15 333.05 -7.86 -38.01 By element: Atomic # 1 Polarization: 2.46 SS G_CDS: -2.59 Total: -0.13 kcal Atomic # 6 Polarization: -0.69 SS G_CDS: -2.35 Total: -3.05 kcal Atomic # 7 Polarization: -33.23 SS G_CDS: 0.26 Total: -32.97 kcal Atomic # 8 Polarization: -18.12 SS G_CDS: -2.10 Total: -20.22 kcal Atomic # 14 Polarization: 19.41 SS G_CDS: -4.67 Total: 14.74 kcal Atomic # 17 Polarization: 0.01 SS G_CDS: -1.43 Total: -1.41 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -30.15 -7.86 -38.01 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605438835.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.291 kcal (2) G-P(sol) polarization free energy of solvation -30.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds