Wall clock time and date at job start Tue Mar 31 2020 15:30:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46897 * 109.47101 * 2 1 4 4 C 1.46899 * 111.00082 * 193.95138 * 3 2 1 5 5 C 1.50703 * 109.46901 * 66.05142 * 4 3 2 6 6 H 1.08008 * 119.99927 * 359.97438 * 5 4 3 7 7 C 1.37871 * 120.00128 * 180.02562 * 5 4 3 8 8 N 1.31520 * 120.00063 * 180.02562 * 7 5 4 9 9 Si 1.86801 * 120.00164 * 359.97438 * 7 5 4 10 10 H 1.48496 * 109.47110 * 90.00307 * 9 7 5 11 11 H 1.48502 * 109.47197 * 210.00359 * 9 7 5 12 12 H 1.48507 * 109.46790 * 330.00179 * 9 7 5 13 13 C 1.39793 * 110.99711 * 70.00567 * 3 2 1 14 14 C 1.38925 * 120.00591 * 63.94907 * 13 3 2 15 15 C 1.38287 * 120.25223 * 180.02562 * 14 13 3 16 16 C 1.37946 * 120.26223 * 0.25916 * 15 14 13 17 17 N 1.48029 * 119.99383 * 179.74510 * 16 15 14 18 18 O 1.21797 * 120.00026 * 359.97438 * 17 16 15 19 19 O 1.21794 * 119.99754 * 180.02562 * 17 16 15 20 20 C 1.39684 * 120.00883 * 359.48705 * 16 15 14 21 21 C 1.47666 * 120.12861 * 180.27477 * 20 16 15 22 22 O 1.21481 * 119.99766 * 270.23424 * 21 20 16 23 23 O 1.34719 * 119.99775 * 90.23061 * 21 20 16 24 24 C 1.38790 * 120.00101 * 243.97461 * 13 3 2 25 25 Cl 1.73600 * 120.13283 * 359.95200 * 24 13 3 26 26 H 1.09004 * 109.47155 * 59.99690 * 1 2 3 27 27 H 1.09007 * 109.47473 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47350 * 299.99840 * 1 2 3 29 29 H 1.09000 * 109.46624 * 240.00210 * 2 1 3 30 30 H 1.08994 * 109.47094 * 120.00382 * 2 1 3 31 31 H 1.08995 * 109.47441 * 186.04980 * 4 3 2 32 32 H 1.09005 * 109.47270 * 306.05785 * 4 3 2 33 33 H 0.96997 * 119.99701 * 179.97438 * 8 7 5 34 34 H 1.08001 * 119.87542 * 0.02562 * 14 13 3 35 35 H 1.08002 * 119.86393 * 179.97438 * 15 14 13 36 36 H 0.96699 * 116.99637 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4500 1.4377 -0.3306 5 6 3.6535 0.9855 -1.7538 6 1 2.8052 0.6883 -2.3525 7 6 4.9227 0.9503 -2.2911 8 7 5.1003 0.5562 -3.5332 9 14 6.3901 1.4636 -1.2553 10 1 6.9292 0.2795 -0.5394 11 1 7.4428 2.0316 -2.1354 12 1 5.9647 2.4879 -0.2677 13 6 1.7659 2.0060 1.2264 14 6 2.3719 1.5326 2.3834 15 6 2.1241 2.1427 3.5994 16 6 1.2691 3.2227 3.6739 17 7 1.0037 3.8677 4.9796 18 8 1.5398 3.4446 5.9880 19 8 0.2485 4.8210 5.0454 20 6 0.6580 3.7110 2.5166 21 6 -0.2529 4.8707 2.5924 22 8 -1.4403 4.6990 2.7834 23 8 0.2328 6.1192 2.4498 24 6 0.9080 3.0952 1.2884 25 17 0.1492 3.6902 -0.1552 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8932 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 3.8113 2.4599 -0.2190 32 1 4.0028 0.7814 0.3416 33 1 5.9932 0.5317 -3.9113 34 1 3.0391 0.6848 2.3330 35 1 2.5983 1.7692 4.4950 36 1 -0.4020 6.8464 2.5074 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001605438835.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:30:11 Heat of formation + Delta-G solvation = -72.706068 kcal Electronic energy + Delta-G solvation = -26174.822181 eV Core-core repulsion = 22074.310078 eV Total energy + Delta-G solvation = -4100.512103 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.070 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.63522 -41.86553 -40.95285 -38.32615 -37.94706 -37.82243 -37.30565 -34.79290 -33.02085 -32.72690 -31.82666 -29.28636 -27.41167 -25.98881 -24.11569 -23.98628 -23.53560 -21.74803 -20.69861 -20.08808 -19.40317 -19.11990 -18.85672 -18.38292 -17.77943 -17.15240 -16.92168 -16.40787 -16.24132 -15.89342 -15.15336 -15.01045 -14.81460 -14.64697 -14.41467 -14.09119 -13.68095 -13.09546 -13.04277 -12.98032 -12.84151 -12.78034 -12.76445 -12.57221 -12.49463 -12.37441 -12.29542 -12.12938 -11.94527 -11.77659 -11.50036 -10.78343 -10.75063 -10.39206 -9.50394 -8.26655 -6.31206 -1.66020 -0.74410 -0.12036 -0.08734 0.67057 0.71196 1.36310 1.40431 1.44679 1.48064 1.71485 2.34741 2.59182 3.01836 3.07428 3.28083 3.42416 3.55982 3.74392 3.95998 4.17001 4.25569 4.32493 4.54078 4.57403 4.69242 4.74666 4.81960 4.97020 4.99799 5.18918 5.23714 5.32447 5.47529 5.81057 6.10660 6.24719 6.49443 6.62474 6.76663 7.31583 8.89184 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.014895 B = 0.004425 C = 0.004088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1879.408522 B = 6325.948596 C = 6847.063259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.059 3.941 3 N -0.511 5.511 4 C 0.177 3.823 5 C -0.512 4.512 6 H 0.045 0.955 7 C 0.016 3.984 8 N -0.944 5.944 9 Si 0.935 3.065 10 H -0.259 1.259 11 H -0.291 1.291 12 H -0.247 1.247 13 C 0.166 3.834 14 C -0.113 4.113 15 C -0.013 4.013 16 C -0.029 4.029 17 N 0.031 4.969 18 O -0.110 6.110 19 O -0.201 6.201 20 C -0.050 4.050 21 C 0.544 3.456 22 O -0.507 6.507 23 O -0.492 6.492 24 C 0.001 3.999 25 Cl -0.014 7.014 26 H 0.049 0.951 27 H 0.080 0.920 28 H 0.046 0.954 29 H 0.078 0.922 30 H 0.060 0.940 31 H 0.029 0.971 32 H 0.018 0.982 33 H 0.266 0.734 34 H 0.189 0.811 35 H 0.205 0.795 36 H 0.440 0.560 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.016 3.538 15.480 16.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.066 4.066 3 N -0.233 5.233 4 C 0.053 3.947 5 C -0.550 4.550 6 H 0.064 0.936 7 C -0.183 4.183 8 N -0.584 5.584 9 Si 0.759 3.241 10 H -0.184 1.184 11 H -0.217 1.217 12 H -0.170 1.170 13 C 0.070 3.930 14 C -0.134 4.134 15 C -0.033 4.033 16 C -0.113 4.113 17 N 0.550 4.450 18 O -0.339 6.339 19 O -0.403 6.403 20 C -0.054 4.054 21 C 0.385 3.615 22 O -0.396 6.396 23 O -0.307 6.307 24 C -0.029 4.029 25 Cl 0.015 6.985 26 H 0.069 0.931 27 H 0.099 0.901 28 H 0.065 0.935 29 H 0.097 0.903 30 H 0.078 0.922 31 H 0.047 0.953 32 H 0.036 0.964 33 H 0.075 0.925 34 H 0.206 0.794 35 H 0.222 0.778 36 H 0.303 0.697 Dipole moment (debyes) X Y Z Total from point charges -6.222 3.238 14.148 15.792 hybrid contribution 0.439 0.647 0.362 0.862 sum -5.783 3.885 14.510 16.096 Atomic orbital electron populations 1.21764 0.94227 1.02542 1.01404 1.22225 0.96032 0.85689 1.02613 1.59665 1.20255 1.19420 1.23972 1.20094 0.82147 0.96761 0.95703 1.21070 0.93468 1.43644 0.96857 0.93637 1.25713 1.01838 0.94830 0.95883 1.70031 1.23440 1.49180 1.15797 0.85901 0.79006 0.79896 0.79315 1.18407 1.21666 1.17032 1.19270 0.90776 0.91273 0.91681 1.22336 0.99777 1.01474 0.89767 1.21348 0.91175 0.89276 1.01479 1.20971 1.07155 1.01621 0.81560 1.43488 0.98808 0.99922 1.02772 1.94506 1.49223 1.65647 1.24568 1.94574 1.33878 1.19326 1.92520 1.18550 0.98730 0.96201 0.91881 1.20033 0.85866 0.83728 0.71857 1.90931 1.17102 1.86577 1.44970 1.84549 1.46890 1.15914 1.83298 1.20784 0.98447 0.96479 0.87160 1.98431 1.78942 1.86456 1.34636 0.93137 0.90068 0.93531 0.90325 0.92183 0.95321 0.96395 0.92466 0.79363 0.77833 0.69668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.66 9.95 71.98 0.72 -2.94 16 2 C 0.06 1.75 5.44 86.30 0.47 2.22 16 3 N -0.51 -17.08 3.85 -699.59 -2.69 -19.77 16 4 C 0.18 6.96 3.37 85.56 0.29 7.25 16 5 C -0.51 -25.89 8.87 25.60 0.23 -25.66 16 6 H 0.05 2.61 7.47 -2.91 -0.02 2.59 16 7 C 0.02 0.82 5.47 84.65 0.46 1.28 16 8 N -0.94 -54.90 13.96 21.45 0.30 -54.60 16 9 Si 0.94 39.10 27.47 68.60 1.88 40.98 16 10 H -0.26 -10.16 7.11 99.48 0.71 -9.45 16 11 H -0.29 -12.48 7.11 99.48 0.71 -11.77 16 12 H -0.25 -9.42 6.54 99.48 0.65 -8.77 16 13 C 0.17 4.61 3.73 38.17 0.14 4.75 16 14 C -0.11 -2.27 8.52 22.45 0.19 -2.08 16 15 C -0.01 -0.24 9.53 22.21 0.21 -0.03 16 16 C -0.03 -0.72 6.88 36.65 0.25 -0.46 16 17 N 0.03 0.82 4.45 -45.79 -0.20 0.61 16 18 O -0.11 -2.68 18.44 18.89 0.35 -2.33 16 19 O -0.20 -6.02 16.29 24.04 0.39 -5.63 16 20 C -0.05 -1.38 5.75 -20.10 -0.12 -1.50 16 21 C 0.54 15.46 4.19 70.31 0.29 15.75 16 22 O -0.51 -16.51 17.76 23.91 0.42 -16.09 16 23 O -0.49 -11.09 13.39 -54.04 -0.72 -11.81 16 24 C 0.00 0.02 6.37 22.74 0.14 0.16 16 25 Cl -0.01 -0.44 27.52 -2.72 -0.07 -0.52 16 26 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 27 H 0.08 1.72 8.14 -2.38 -0.02 1.70 16 28 H 0.05 1.15 7.52 -2.39 -0.02 1.13 16 29 H 0.08 2.80 6.60 -2.39 -0.02 2.79 16 30 H 0.06 1.42 7.06 -2.39 -0.02 1.40 16 31 H 0.03 1.17 7.12 -2.39 -0.02 1.15 16 32 H 0.02 0.64 6.89 -2.38 -0.02 0.63 16 33 H 0.27 14.57 8.31 -92.71 -0.77 13.80 16 34 H 0.19 2.85 7.12 -2.91 -0.02 2.83 16 35 H 0.20 2.12 7.60 -2.91 -0.02 2.10 16 36 H 0.44 5.39 9.11 -74.06 -0.67 4.72 16 Total: -1.00 -67.49 333.05 3.37 -64.12 By element: Atomic # 1 Polarization: 5.86 SS G_CDS: 0.43 Total: 6.29 kcal Atomic # 6 Polarization: -4.55 SS G_CDS: 3.29 Total: -1.26 kcal Atomic # 7 Polarization: -71.16 SS G_CDS: -2.60 Total: -73.75 kcal Atomic # 8 Polarization: -36.30 SS G_CDS: 0.44 Total: -35.86 kcal Atomic # 14 Polarization: 39.10 SS G_CDS: 1.88 Total: 40.98 kcal Atomic # 17 Polarization: -0.44 SS G_CDS: -0.07 Total: -0.52 kcal Total: -67.49 3.37 -64.12 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605438835.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.591 kcal (2) G-P(sol) polarization free energy of solvation -67.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds