Wall clock time and date at job start Tue Mar 31 2020 15:54:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31564 * 1 3 3 Si 1.86795 * 120.00309 * 2 1 4 4 H 1.48508 * 109.46913 * 269.99733 * 3 2 1 5 5 H 1.48502 * 109.46910 * 29.99437 * 3 2 1 6 6 H 1.48496 * 109.47349 * 149.99898 * 3 2 1 7 7 C 1.38661 * 119.99467 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99547 * 180.02562 * 7 2 1 9 9 O 1.34826 * 120.00541 * 359.97438 * 7 2 1 10 10 C 1.35743 * 117.00301 * 174.93479 * 9 7 2 11 11 C 1.38935 * 120.04459 * 185.61725 * 10 9 7 12 12 C 1.38114 * 120.04765 * 179.97438 * 11 10 9 13 13 C 1.38226 * 120.12216 * 359.77650 * 12 11 10 14 14 C 1.38800 * 120.07876 * 0.49894 * 13 12 11 15 15 O 1.35910 * 120.01911 * 179.74613 * 14 13 12 16 16 C 1.34729 * 116.99683 * 255.02107 * 15 14 13 17 17 O 1.21477 * 120.00069 * 355.01048 * 16 15 14 18 18 C 1.47732 * 119.99815 * 175.01815 * 16 15 14 19 19 C 1.39769 * 120.07403 * 359.97438 * 18 16 15 20 20 C 1.38054 * 120.14815 * 180.25855 * 19 18 16 21 21 C 1.38092 * 120.30529 * 359.44233 * 20 19 18 22 22 C 1.39728 * 120.15334 * 0.55981 * 21 20 19 23 23 C 1.47738 * 120.07777 * 179.74732 * 22 21 20 24 24 O 1.21472 * 120.00220 * 179.97438 * 23 22 21 25 25 O 1.34715 * 119.99904 * 359.97138 * 23 22 21 26 26 C 1.39334 * 120.07782 * 179.97438 * 18 16 15 27 27 C 1.38617 * 119.95699 * 359.48122 * 14 13 12 28 28 H 0.96998 * 119.99718 * 0.02562 * 1 2 3 29 29 H 1.08005 * 119.97577 * 359.97438 * 11 10 9 30 30 H 1.08002 * 119.93712 * 180.02562 * 12 11 10 31 31 H 1.08001 * 119.96534 * 180.27805 * 13 12 11 32 32 H 1.07994 * 119.92824 * 359.97438 * 19 18 16 33 33 H 1.08003 * 119.84860 * 179.72528 * 20 19 18 34 34 H 1.08004 * 119.92795 * 180.25813 * 21 20 19 35 35 H 0.96706 * 116.99476 * 180.02562 * 25 23 22 36 36 H 1.08003 * 120.15137 * 359.97438 * 26 18 16 37 37 H 1.08002 * 120.06303 * 180.25311 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2497 1.6176 0.0000 4 1 2.4973 2.0463 -1.4002 5 1 1.4471 2.6526 0.6999 6 1 3.5472 1.4401 0.7000 7 6 2.0088 -1.2009 0.0005 8 1 3.0889 -1.2009 0.0010 9 8 1.3347 -2.3685 0.0016 10 6 2.0698 -3.5047 -0.1047 11 6 1.4355 -4.7347 -0.2277 12 6 2.1834 -5.8907 -0.3364 13 6 3.5642 -5.8270 -0.3278 14 6 4.2032 -4.6015 -0.1995 15 8 5.5609 -4.5408 -0.1861 16 6 6.1516 -4.3227 1.0050 17 8 5.4731 -4.1002 1.9878 18 6 7.6244 -4.3539 1.1158 19 6 8.4065 -4.6101 -0.0139 20 6 9.7828 -4.6449 0.0890 21 6 10.3967 -4.4159 1.3045 22 6 9.6272 -4.1586 2.4421 23 6 10.2856 -3.9193 3.7428 24 8 9.6153 -3.6953 4.7308 25 8 11.6293 -3.9495 3.8332 26 6 8.2371 -4.1280 2.3467 27 6 3.4559 -3.4392 -0.0906 28 1 -0.4849 0.8400 -0.0004 29 1 0.3568 -4.7869 -0.2382 30 1 1.6885 -6.8458 -0.4322 31 1 4.1465 -6.7321 -0.4175 32 1 7.9330 -4.7858 -0.9684 33 1 10.3823 -4.8477 -0.7862 34 1 11.4740 -4.4404 1.3772 35 1 12.0144 -3.7874 4.7054 36 1 7.6375 -3.9292 3.2227 37 1 3.9514 -2.4843 0.0052 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001605601278.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:54:18 Heat of formation + Delta-G solvation = -132.895827 kcal Electronic energy + Delta-G solvation = -25974.119626 eV Core-core repulsion = 21841.137597 eV Total energy + Delta-G solvation = -4132.982029 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.087 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.17215 -40.62568 -39.18308 -38.55558 -36.99986 -36.47552 -35.76581 -32.36332 -32.20479 -31.61958 -29.72059 -28.94079 -25.62598 -25.19251 -24.97247 -22.45834 -21.80657 -21.67254 -20.60296 -18.74974 -18.31792 -18.15992 -17.74464 -16.64926 -16.41551 -16.10454 -15.99619 -15.88461 -15.16080 -15.11734 -14.58944 -14.36097 -14.27531 -13.91092 -13.69319 -13.56780 -13.14320 -13.08432 -12.62034 -12.40038 -11.97525 -11.92263 -11.82871 -11.56595 -11.35718 -11.08009 -11.03318 -10.89927 -10.53650 -10.50708 -10.35361 -9.60041 -9.56223 -9.54999 -8.89356 -8.21865 -7.38646 -6.50105 -4.09408 0.10126 0.52161 1.67724 1.96064 2.17612 2.48084 2.56060 2.98166 3.12178 3.12693 3.17700 3.39339 3.93601 4.31860 4.33278 4.47953 4.50874 4.68098 4.72311 4.98234 5.02527 5.17881 5.26612 5.40242 5.55805 5.70050 5.74074 5.79796 5.81718 5.96995 6.05893 6.12071 6.20044 6.25448 6.51833 6.81371 6.94330 7.05282 7.09745 7.30274 7.47509 7.53577 7.93170 8.03271 8.95001 9.60651 10.67312 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.011904 B = 0.003104 C = 0.002679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2351.614063 B = 9017.907527 C =10449.601740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.859 5.859 2 C 0.042 3.958 3 Si 0.941 3.059 4 H -0.272 1.272 5 H -0.276 1.276 6 H -0.267 1.267 7 C -0.393 4.393 8 H 0.091 0.909 9 O -0.169 6.169 10 C 0.163 3.837 11 C -0.184 4.184 12 C -0.065 4.065 13 C -0.210 4.210 14 C 0.119 3.881 15 O -0.290 6.290 16 C 0.499 3.501 17 O -0.472 6.472 18 C -0.124 4.124 19 C -0.025 4.025 20 C -0.144 4.144 21 C -0.031 4.031 22 C -0.141 4.141 23 C 0.529 3.471 24 O -0.505 6.505 25 O -0.512 6.512 26 C 0.008 3.992 27 C -0.228 4.228 28 H 0.271 0.729 29 H 0.124 0.876 30 H 0.123 0.877 31 H 0.115 0.885 32 H 0.150 0.850 33 H 0.143 0.857 34 H 0.146 0.854 35 H 0.417 0.583 36 H 0.155 0.845 37 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.318 -10.014 0.140 24.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.493 5.493 2 C -0.163 4.163 3 Si 0.765 3.235 4 H -0.197 1.197 5 H -0.201 1.201 6 H -0.191 1.191 7 C -0.469 4.469 8 H 0.109 0.891 9 O -0.072 6.072 10 C 0.109 3.891 11 C -0.204 4.204 12 C -0.083 4.083 13 C -0.229 4.229 14 C 0.078 3.922 15 O -0.205 6.205 16 C 0.342 3.658 17 O -0.358 6.358 18 C -0.125 4.125 19 C -0.043 4.043 20 C -0.162 4.162 21 C -0.049 4.049 22 C -0.142 4.142 23 C 0.373 3.627 24 O -0.394 6.394 25 O -0.325 6.325 26 C -0.010 4.010 27 C -0.248 4.248 28 H 0.081 0.919 29 H 0.142 0.858 30 H 0.141 0.859 31 H 0.133 0.867 32 H 0.168 0.832 33 H 0.161 0.839 34 H 0.163 0.837 35 H 0.276 0.724 36 H 0.173 0.827 37 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 21.279 -9.699 0.365 23.388 hybrid contribution 0.704 1.014 0.618 1.380 sum 21.982 -8.685 0.983 23.656 Atomic orbital electron populations 1.70036 1.05956 1.27866 1.45474 1.25294 0.95867 0.98850 0.96274 0.85711 0.79060 0.79926 0.78807 1.19711 1.20066 1.19120 1.21327 0.91787 0.80718 1.53098 0.89141 1.83994 1.34005 1.11391 1.77797 1.19117 0.89259 0.88450 0.92306 1.20352 1.00076 0.90174 1.09753 1.20489 0.92530 0.97231 0.98100 1.20499 0.94694 0.95225 1.12521 1.18179 0.78329 0.93645 1.02049 1.84508 1.20986 1.82298 1.32694 1.21248 0.88510 0.74359 0.81641 1.90932 1.65109 1.42356 1.37358 1.19007 0.89854 1.08848 0.94839 1.21890 0.93856 0.90133 0.98457 1.21213 0.94405 1.02351 0.98216 1.21745 1.00904 0.91016 0.91230 1.18858 0.92970 1.10687 0.91691 1.20704 0.80285 0.73010 0.88735 1.90949 1.65317 1.44786 1.38317 1.84519 1.22305 1.84226 1.41435 1.21392 0.92886 0.89158 0.97582 1.21214 0.94294 0.98188 1.11119 0.91863 0.85804 0.85902 0.86669 0.83240 0.83883 0.83671 0.72412 0.82733 0.84980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.26 13.67 55.48 0.76 -24.50 16 2 C 0.04 1.17 5.49 -17.51 -0.10 1.07 16 3 Si 0.94 20.89 29.55 -169.99 -5.02 15.87 16 4 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 5 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 6 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 7 C -0.39 -11.21 9.49 30.89 0.29 -10.92 16 8 H 0.09 2.44 5.20 -52.48 -0.27 2.17 16 9 O -0.17 -4.87 9.76 0.08 0.00 -4.87 16 10 C 0.16 4.03 6.65 -39.13 -0.26 3.77 16 11 C -0.18 -3.87 9.99 -39.37 -0.39 -4.26 16 12 C -0.07 -1.15 10.03 -39.63 -0.40 -1.55 16 13 C -0.21 -3.78 9.99 -39.38 -0.39 -4.18 16 14 C 0.12 2.39 5.19 -39.23 -0.20 2.18 16 15 O -0.29 -5.05 9.27 -24.80 -0.23 -5.28 16 16 C 0.50 8.47 7.76 34.61 0.27 8.74 16 17 O -0.47 -9.78 15.81 -19.25 -0.30 -10.08 16 18 C -0.12 -1.58 5.87 -105.04 -0.62 -2.19 16 19 C -0.03 -0.23 9.61 -39.08 -0.38 -0.61 16 20 C -0.14 -0.97 10.02 -39.70 -0.40 -1.36 16 21 C -0.03 -0.22 9.61 -39.08 -0.38 -0.60 16 22 C -0.14 -1.40 5.87 -105.04 -0.62 -2.02 16 23 C 0.53 5.32 8.27 34.61 0.29 5.60 16 24 O -0.51 -6.88 17.13 -19.24 -0.33 -7.21 16 25 O -0.51 -3.20 12.67 -40.53 -0.51 -3.71 16 26 C 0.01 0.10 9.14 -38.75 -0.35 -0.25 16 27 C -0.23 -5.30 8.59 -39.25 -0.34 -5.63 16 28 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 29 H 0.12 2.44 8.06 -52.48 -0.42 2.01 16 30 H 0.12 1.70 8.06 -52.49 -0.42 1.28 16 31 H 0.12 1.74 8.06 -52.49 -0.42 1.31 16 32 H 0.15 1.20 7.60 -52.49 -0.40 0.80 16 33 H 0.14 0.53 8.06 -52.48 -0.42 0.10 16 34 H 0.15 0.69 7.60 -52.48 -0.40 0.29 16 35 H 0.42 0.84 9.11 45.56 0.42 1.25 16 36 H 0.16 2.15 7.23 -52.48 -0.38 1.77 16 37 H 0.13 3.17 5.64 -52.49 -0.30 2.87 16 LS Contribution 343.65 15.07 5.18 5.18 Total: -1.00 -35.77 343.65 -6.59 -42.36 By element: Atomic # 1 Polarization: 6.62 SS G_CDS: -2.16 Total: 4.46 kcal Atomic # 6 Polarization: -8.24 SS G_CDS: -3.97 Total: -12.21 kcal Atomic # 7 Polarization: -25.26 SS G_CDS: 0.76 Total: -24.50 kcal Atomic # 8 Polarization: -29.78 SS G_CDS: -1.38 Total: -31.16 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -35.77 -6.59 -42.36 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605601278.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.536 kcal (2) G-P(sol) polarization free energy of solvation -35.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds